BMRB - Biological Magnetic Resonance Bank

BMRB Query Grid

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Data type(s): Polymer type(s): Polymer join type:

Number of entries returned: 114

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BMRB ID	Entry Title	Carbon shifts	Nitrogen shifts	Phosphorus shifts	Hydrogen shifts	Protein	DNA	RNA
4103	1H, 13C and 15N Chemical Shift Assignments of the 14mer DNA Duplex BS2	188	22	0	258		X
4104	1H, 13C and 15N Chemical Shift Assignments of the 14mer DNA Duplex BS2 in the Complex with the Antennapedia Homeodomain	176	23	0	257	X	X
4141	vnd/NK-2 Homeodomain DNA Complex Protein 1H, 13C, and 15N Chemical Shifts and HNHA Coupling Constant	291	100	18	904	X	X
4165	1H, 13C, and 15N Chemical Shift Assignments for Tn916 N-terminal DNA Binding Domain complex with DNA	231	80	0	667	X	X
4248	LEF1 HMG Domain (From Mouse), Complexed with DNA (15bp), NMR, 12 Structures	309	88	0	815	X	X
4256	1H, 15N and 13C Assignments of the DNA Binding Domain of Transcription Factor Mbp1 from S. cerevisiae in Both Its Free and DNA Bound Forms, and 1H Assignments of the Free DNA	156	115	0	419	X	X
4359	NMR studies of the Pbx1 TALE Homeodomain Protein free in Solution and bound to DNA : Proposal for a Mechanism of HoxB1-Pbx1-DNA Complex Assembly	71	74	0	74	X	X
4368	Chemical Shift Assignments for A35T vnd/NK2 Mutant Homeodomain	265	76	0	549	X	X
4708	WT1-KTS/DNA complex	227	108	0	108	X	X
4710	WT1+KTS/DNA complex	222	97	0	97	X	X
4734	HMG-D complexed to a bulge DNA: an NMR study	46	80	0	455	X	X
4813	NMR structure of lac repressor HP62-DNA complex	169	66	0	595	X	X
5032	1H, 13C and 15N Resonance Assignments of the DNA Binding Domain of the Human Forkhead Transcription Factor AFX	147	75	0	75	X	X
5232	1H, 13C, and 15N resonance assignments of the DNA-binding domain of the essential protein Cdc13 complexed with single-stranded telomeric DNA	823	184	0	1238	X	X
5282	Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bonds Residual Dipolar Couplings	35	9	6	68		X
5345	Assignment of lac repressor headpiece complexed of its natural operator	458	138	0	1207	X	X
5349	PBX Homeodomain-DNA complex	317	89	0	778	X	X
5361	Solution Structure of the DNA Complex of Human TRF1	186	67	0	655	X	X
5363	1H, 13C, and 15N Chemical shifts for hERR2 Protein, 1H chemical shifts for DNA	322	98	0	856	X	X
5517	NMR studies of the DNA-binding domain of B-Myb	289	101	0	625	X	X
5791	Solution structure of a dimeric lactose DNA-binding domain complexed to a nonspecific DNA sequence	117	69	0	575	X	X
6276	1H, 13C and 15N resonance assignments for the six-zinc finger domain of the MTF-1 metalloregulatory protein in the DNA bound state	453	158	0	158	X	X
6319	Backbone 1H, 13C, and 15N Chemical Shift Assignments for Nkx2.5 Homeodomain plus NK2 Specific Domain in the DNA Bound State	169	134	0	255	X	X
6353	1H, 15N and 13C resonance assignments of the BRCT Region of the large subunit of human Replication Factor C	321	113	0	748	X	X
6445	Backbone 1H, 13C, and 15N and 13CB Chemical Shift Assignments for Six C2H2 Zinc Fingers (F1-6) of MTF-1 in the DNA Bound State (22 bp)	490	165	0	165	X	X
6605	E. Coli Ada in a complex with DNA	438	142	0	693	X	X
6877	NMR assignments of the Human Papillomavirus type 16 E2C DNA-bound form	245	76	0	343	X	X
6906	1H, 13C, and 15N Chemical Shift Assignments for the Bicoid Homedomain	310	76	0	478	X	X
7097	DNA recognition by the Brinker nuclear repressor - an extreme case of the coupling between binding and folding	255	75	0	582	X	X
7105	1H, 13C and 15N chemical shift assignments for SRY.B in complex with 16-mer DNA	619	163	0	1493	X	X
7319	Polymerase Beta and Double gap double hairpin DNA	775	268	0	268	X	X
7354	NMR STRUCTURE OF A PROTEIN-DNA COMPLEX OF AN ALTERED SPECIFICITY MUTANT OF THE LAC REPRESSOR THAT MIMICS THE GAL REPRESSOR	248	70	0	558	X	X
7377	Resonance assignments of the metal sensor CzrA in the apo-, Zn2- and DNA-bound (42 kDa) states	360	114	0	271	X	X
15083	NMR Structure of the Sigma-54 RpoN Domain Bound to the-24 Promoter Element	208	61	0	679	X	X
15213	Assignments of {lambda}-IntCB bound to a DNA half-site	220	86	0	86	X	X
15533	Structure of the Wilms' Tumor Suppressor Protein Zinc Finger Domain Bound to DNA	0	115	0	121	X	X
16449	Structure of the XPF-single strand DNA complex	199	73	0	435	X	X
16485	Solution structure of the THAP zinc finger of THAP1 in complex with its DNA target	351	84	0	902	X	X
16577	Backbone Chemical Shift Assignments of Mouse HOXA13 DNA Binding Domain in Complex with DNA Duplex	211	70	0	142	X	X
16812	data-driven model of MED1:DNA complex	145	65	0	299	X	X
16936	Solution structure and dynamic analysis of chicken MBD2 methyl binding domain bound to a target methylated DNA sequence	307	70	0	582	X	X
17130	Zif 268 with 12bp DNA	175	82	0	82	X	X
17452	Chemical Shifts of the Pitx2 Homeodomain in complex with a TAAGCT non-consensus DNA site	237	89	0	460	X	X
17592	Backbone assignments of Anabaena Sensory Rhodopsin Transducer with DNA	306	93	0	93	X	X
17729	Structure of the DNA complex of the C-Terminal domain of Ler	151	59	0	637	X	X
17732	Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA	70	80	0	665	X	X
18015	Chemical shift assignments for the homeodomain of Pitx2 in complex with a TAATCC DNA binding site	225	89	0	519	X	X
18462	Solution NMR structure of Kaiso zinc finger DNA binding domain in complex with Kaiso binding site DNA	607	164	0	1288	X	X
18496	Solution NMR Structure of YdbC:dT19G1 complex. Northeast Structural Genomics Consortium (NESG) Target KR150	330	70	0	655	X	X
18881	NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid	56	41	0	288		X	X
18935	African Swine Fever Virus Pol X in the ternary complex with MgdGTP and DNA	571	165	0	476	X	X
19138	ERG DNA Complex	329	101	0	203	X	X
19367	Solution structure of the complex formed by the region 2 of E. coli sigmaE and its cognate -10 non template element TGTCAAA	317	103	0	684	X	X
19391	Solution structure of MBD3 methylcytosine binding domain while bound to hydroxymethylated DNA	309	68	0	437	X	X
19511	NMR Structure of the homeodomain transcription factor Gbx1 from Homo sapiens solved in the presence of the DNA sequence CGACTAATTAGTCG	248	75	0	493	X	X
19540	haddock model of MyT1 F4F5 - DNA complex	115	51	0	51	X	X
19653	RRM domain from C. elegans SUP-12	420	99	0	731	X	X
19747	13C and 15N Chemical Shift Assignments for the M13 Bacteriophage	238	53	0	0	X	X
19805	13C and 15N Chemical Shift Assignments for the dsDNA in Bacteriophage T7	39	14	0	0		X
19939	Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA	291	75	0	526	X	X
19957	Assignment of DNA-MC1 protein complex	78	103	0	873	X	X
25092	truncated EcMazE-DNA complex	0	61	0	65	X	X
25407	Structure of the DNA complex of the C-Terminal domain of MvaT	163	51	0	536	X	X
25582	structure of a protein	76	14	0	119	X	X
25701	Backbone assignments and ILV methyl assignments for EcoRV bound to 16-mer double stranded DNA (GCAAAGATATCTTTCG) without Lu3+	371	121	0	295	X	X
25752	Backbone assignments and ILV methyl assignments for EcoRV bound to 16-mer double stranded DNA (GCAAAGATATCTTTCG) with Lu3+	371	117	0	291	X	X
25888	1H, 13C and 15N chemical shift assignments and solution structure for PARP-1 F1F2 domains in complex with a DNA single-strand break	272	396	0	896	X	X
25891	1H, 13C and 15N chemical shift assignments for PARP-1 F1F2F3 domains in complex with a DNA single-strand break	348	335	0	335	X	X
25894	1H and 15N chemical shift assignments for PARP-1 F1F2F3 domains in complex with PARP-1 WGR domain and a DNA single-strand break	0	444	0	444	X	X
26620	Amide/Methyl/Aromatic chemical shift and order parameter of Barnase-dCGAC	55	109	0	274	X	X
26731	Structural and dynamics studies of Pax5 reveal asymmetry in stability and DNA binding by the Paired domain	424	135	0	135	X	X
26808	Egr-1 - DNA complex	366	109	0	542	X	X
26931	Backbone chemical shifts of the MBD2/3 methyl-cytosine binding domain from Ephydatia muelleri	180	62	0	62	X	X
26978	MeCP2 bound to methylated DNA	266	72	0	305	X	X
27173	1H, 13C, and 15N resonance assignments of a 22mer G-quadruplex forming within KRAS oncogene promoter region at physiological temperature	136	12	0	203		X
27364	Backbone 1H, 15N chemical shift assignments of Kaiso zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site (MeCG2)	0	111	0	111	X	X
27366	Backbone 1H, 15N chemical shift assignments of Kaiso E535Q zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site (MeCG2)	0	111	0	111	X	X
27367	Backbone 1H, 15N chemical shift assignments of Kaiso E535A zinc finger DNA binding domain in complex with its double CpG-methylated DNA consensus binding site	0	111	0	111	X	X
27368	Backbone 1H, 15N chemical shift assignments of Kaiso zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding site (KBS)	0	114	0	114	X	X
27369	Backbone 1H, 15N chemical shift assignments of Kaiso E535Q zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding site (KBS)	0	114	0	114	X	X
27370	Backbone 1H, 15N chemical shift assignments of Kaiso E535A zinc finger DNA binding domain in complex with a double CpG-methylated DNA resembling the specific Kaiso binding site (KBS)	0	114	0	114	X	X
27371	Backbone 1H, 15N chemical shift assignments of Kaiso zinc finger DNA binding domain in complex with a semi-CpG-methylated DNA resembling the specific Kaiso binding site (KBS)	0	114	0	114	X	X
27372	Backbone 1H, 15N chemical shift assignments of Kaiso zinc finger DNA binding domain in complex with a hemi-CpG-methylated DNA resembling the specific Kaiso binding site (KBS)	0	114	0	114	X	X
27404	1H, 15N, 13C backbone resonance assignments of the nuclease core residues 2-336 of K93A human flap endonuclease-1 in complex with dual-hairpin DNA substrate	280	132	0	132	X	X
28081	Trimolecular G-quadruplex	27	9	0	167		X
30253	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A2-DNA structure	113	10	22	155		X
30254	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNA structure	115	10	22	161		X
30255	Insights into Watson-Crick/Hoogsteen Breathing Dynamics and Damage Repair from the Solution Structure and Dynamic Ensemble of DNA Duplexes containing m1A - A6-DNAm1A16 structure	115	10	20	160		X
34172	NMR structure of the complex formed by an engineered region 2 of sigmaE in complex with GTAAAA	405	102	0	749	X	X
34290	Hybrid structure of the pRN1 helix bundle domain in complex with DNA and 2 ATP molecules	376	104	0	850	X	X
34291	NMR structure of the DNA-bound helix bundle domain from the functional pRN1 primase	303	104	0	779	X	X
34431	NMR structure of KRAS32R G9T conformer G-quadruplex within KRAS promoter region	167	13	0	289		X
34441	NMR structure of KRAS32R G25T conformer G-quadruplex within KRAS promoter region	34	12	0	258		X
34654	Pre-catalytic complex of 10-23 DNAzyme with RNA target	118	6	0	423		X	X
36001	Structure model of a protein-DNA complex	438	98	0	612	X	X
36186	Solution Structure of the DNA complex of the C-terminal Domain of Rok	355	83	0	971	X	X
36404	Solution structure of the C-clamp domain from human HDBP1 in complex with DNA	121	40	0	450	X	X
50604	Human Histone H2A type-2A in Nucleosome	33	19	0	20	X	X
50625	A (3+1) hybrid G-quadruplex containing right loop progression	24	12	0	201		X
50805	Histone H3 tail within tetrasome	68	33	0	33	X	X
50806	Histone H3 tail within nucleosome	66	32	0	32	X	X
50807	Histone H3 tail within hexasome	113	59	0	59	X	X
50831	1H, 15N, 13C, backbone resonance assignment of the 5'-GG(m6A)CT-3' bound human Alkbh5, pH 6.0	1115	344	0	344	X	X
51140	H3 tail in 193-bp nucleosome	0	145	0	145	X	X
51141	H3 tail in 145-bp nucleosome	126	148	0	148	X	X
51142	H3 tail in 145-bp nucleosome	0	42	0	41	X	X
51143	H3 tail in 193-bp nucleosome	0	43	0	43	X	X
51161	Backbone assignments of p65 DNA binding domain in complex with DNA.	0	134	0	134	X	X
51177	Histone H2A and H2B tails within 112-bp hexasome	0	51	0	51	X	X
51178	Histone H2A and H2B tails within 112-bp DNA/pAID nucleosome	223	308	0	308	X	X
51337	5caC-containing dsDNA 12mers at three pH conditions	34	15	0	248		X
51704	Histone H3 Core Domain in Chromatin with Different DNA Linker Lengths Studied by 1H-Detected Solid-State NMR Spectrsocopy	141	81	0	80	X	X
51705	Histone H3 Core Domain in Chromatin with Different DNA Linker Lengths Studied by 1H-Detected Solid-State NMR Spectrsocopy	142	81	0	80	X	X
51706	Histone H3 Core Domain in Chromatin with Different DNA Linker Lengths Studied by 1H-Detected Solid-State NMR Spectrsocopy	242	85	0	83	X	X