Spermidine (C7H19N3)
BMRB entry bmse000116
Entry DOI: doi:10.13018/BMSE000116
Data source: Madison Metabolomics Consortium - Francisca Jofre, Mark E. Anderson, John L. Markley
NMR-STAR file:
bmse000116.strNMR-STAR
interactive viewerStructure file (mol/sdf):
bmse000116.molAll files for
bmse000116Time Domain Data:
bmse000116.zipSample and instrument details are given with the spectrum
Assigned chemical shifts
Set 1
Sample: multiple; see NMR-STAR file
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
| Atom ID | Author Nomenclature | Value | Ambiguity Code |
|---|---|---|---|
| C4 | C2 | 41.482 | 4 |
| C4 | C2 | 39.292 | 4 |
| C1 | C3 | 26.624 | 4 |
| C1 | C3 | 26.581 | 4 |
| C1 | C3 | 25.495 | 4 |
| C2 | C4 | 26.624 | 4 |
| C2 | C4 | 26.581 | 4 |
| C2 | C4 | 25.495 | 4 |
| C6 | C5 | 49.722 | 4 |
| C6 | C5 | 47.228 | 4 |
| C7 | C7 | 49.722 | 4 |
| C7 | C7 | 47.228 | 4 |
| C3 | C8 | 26.624 | 4 |
| C3 | C8 | 26.581 | 4 |
| C3 | C8 | 25.495 | 4 |
| C5 | C9 | 41.482 | 4 |
| C5 | C9 | 39.292 | 4 |
| H17 | H13 | 3.104 | 4 |
| H17 | H13 | 3.044 | 4 |
| H18 | H14 | 3.104 | 4 |
| H18 | H14 | 3.044 | 4 |
| H11 | H15 | 2.100 | 4 |
| H11 | H15 | 1.777 | 4 |
| H12 | H16 | 2.100 | 4 |
| H12 | H16 | 1.777 | 4 |
| H13 | H17 | 2.100 | 4 |
| H13 | H17 | 1.777 | 4 |
| H14 | H18 | 2.100 | 4 |
| H14 | H18 | 1.777 | 4 |
| H21 | H19 | 3.104 | 4 |
| H21 | H19 | 3.149 | 4 |
| H22 | H20 | 3.104 | 4 |
| H22 | H20 | 3.149 | 4 |
| H23 | H22 | 3.104 | 4 |
| H23 | H22 | 3.149 | 4 |
| H24 | H23 | 3.104 | 4 |
| H24 | H23 | 3.149 | 4 |
| H15 | H24 | 2.100 | 4 |
| H15 | H24 | 1.777 | 4 |
| H16 | H25 | 2.100 | 4 |
| H16 | H25 | 1.777 | 4 |
| H19 | H26 | 3.104 | 4 |
| H19 | H26 | 3.044 | 4 |
| H20 | H27 | 3.104 | 4 |
| H20 | H27 | 3.044 | 4 |
NMR experiments
1: 1D 1H, 0.5 mM
Sample: 0.5mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
2: 1D 1H, 2.0 mM
Sample: 2.0mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
3: 1D 1H
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
4: 2D [1H,1H]-TOCSY
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
![Spectrum for experiment #4: 2D [1H,1H]-TOCSY](/ftp/pub/bmrb/metabolomics/entry_directories/bmse000116/nmr/set01/spectra/HH_TOCSY/00.png)
5: 1D 13C
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
6: 1D DEPT90
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
7: 1D DEPT135
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
8: 2D [1H,13C]-HSQC
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
![Spectrum for experiment #8: 2D [1H,13C]-HSQC](/ftp/pub/bmrb/metabolomics/entry_directories/bmse000116/nmr/set01/spectra/1H_13C_HSQC/00.png)
9: 2D [1H,13C]-HMBC
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
![Spectrum for experiment #9: 2D [1H,13C]-HMBC](/ftp/pub/bmrb/metabolomics/entry_directories/bmse000116/nmr/set01/spectra/1H_13C_HMBC/00.png)
10: 2D [1H,1H]-COSY
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 500MHz
![Spectrum for experiment #10: 2D [1H,1H]-COSY](/ftp/pub/bmrb/metabolomics/entry_directories/bmse000116/nmr/set01/spectra/HH_COSY/00.png)
11: 2D [1H,13C]-HSQC SW small
Sample: 100mM in D2O, ref: DSS
Conditions: temperature: 298K, pH: 7.4
Spectrometer: Bruker DMX - 400MHz