data_6j60_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 6j60 _Structure_validation_residue.Date_analyzed 2019-03-29 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.525 0.692 0 N-CA-C 116.854 1.502 . . . . 9.29 116.854 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 28.8 t80 -53.65 128.65 30.16 Favored 'General case' 0 C--O 1.237 0.446 0 N-CA-C 108.441 -0.948 . . . . 6.78 108.441 176.003 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 80.27 2.69 89.41 Favored Glycine 0 C--N 1.346 1.138 0 N-CA-C 115.042 0.777 . . . . 9.58 115.042 -177.72 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -142.4 -145.56 4.5 Favored Glycine 0 C--O 1.24 0.529 0 C-N-CA 124.297 0.951 . . . . 6.57 112.666 -176.213 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 48.2 m-80 -122.04 150.29 42.31 Favored 'General case' 0 C--O 1.24 0.6 0 CA-C-N 118.21 1.005 . . . . 8.72 112.244 -169.845 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 6.4 m-20 -129.39 114.39 16.12 Favored 'General case' 0 CA--C 1.541 0.623 0 CA-C-N 114.558 -1.201 . . . . 16.66 108.549 175.02 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 79.9 m-20 -118.75 121.14 39.38 Favored 'General case' 0 C--O 1.242 0.676 0 C-N-CA 124.588 1.155 . . . . 7.1 109.43 -169.823 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 45.2 m-85 -117.22 116.32 27.04 Favored 'General case' 0 C--O 1.239 0.513 0 C-N-CA 123.64 0.776 . . . . 10.68 110.095 178.307 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.533 1.173 0 CA-C-O 122.979 1.322 . . . . 12.68 114.76 -178.333 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.525 0.692 0 N-CA-C 116.854 1.502 . . . . 7.74 116.854 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 28.8 t80 -53.65 128.65 30.16 Favored 'General case' 0 C--O 1.237 0.446 0 N-CA-C 108.441 -0.948 . . . . 6.53 108.441 176.003 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 80.27 2.69 89.41 Favored Glycine 0 C--N 1.346 1.138 0 N-CA-C 115.042 0.777 . . . . 9.58 115.042 -177.72 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -142.4 -145.56 4.5 Favored Glycine 0 C--O 1.24 0.529 0 C-N-CA 124.297 0.951 . . . . 5.48 112.666 -176.213 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 48.2 m-80 -122.04 150.29 42.31 Favored 'General case' 0 C--O 1.24 0.6 0 CA-C-N 118.21 1.005 . . . . 7.27 112.244 -169.845 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 6.4 m-20 -129.39 114.39 16.12 Favored 'General case' 0 CA--C 1.541 0.623 0 CA-C-N 114.558 -1.201 . . . . 16.66 108.549 175.02 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 79.9 m-20 -118.75 121.14 39.38 Favored 'General case' 0 C--O 1.242 0.676 0 C-N-CA 124.588 1.155 . . . . 5.92 109.43 -169.823 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 45.2 m-85 -117.22 116.32 27.04 Favored 'General case' 0 C--O 1.239 0.513 0 C-N-CA 123.64 0.776 . . . . 8.9 110.095 178.307 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.533 1.173 0 CA-C-O 122.979 1.322 . . . . 12.68 114.76 -178.333 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 209' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.525 0.692 0 N-CA-C 116.854 1.502 . . . . 7.74 116.854 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 210' ' ' PHE . . . . . . . . . . . . . 28.8 t80 -53.65 128.65 30.16 Favored 'General case' 0 C--O 1.237 0.446 0 N-CA-C 108.441 -0.948 . . . . 6.53 108.441 176.003 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 211' ' ' GLY . . . . . . . . . . . . . . . 80.27 2.69 89.41 Favored Glycine 0 C--N 1.346 1.138 0 N-CA-C 115.042 0.777 . . . . 9.58 115.042 -177.72 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 212' ' ' GLY . . . . . . . . . . . . . . . -142.4 -145.56 4.5 Favored Glycine 0 C--O 1.24 0.529 0 C-N-CA 124.297 0.951 . . . . 5.48 112.666 -176.213 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 213' ' ' ASN . . . . . . . . . . . . . 48.2 m-80 -122.04 150.29 42.31 Favored 'General case' 0 C--O 1.24 0.6 0 CA-C-N 118.21 1.005 . . . . 7.27 112.244 -169.845 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 214' ' ' ASP . . . . . . . . . . . . . 6.4 m-20 -129.39 114.39 16.12 Favored 'General case' 0 CA--C 1.541 0.623 0 CA-C-N 114.558 -1.201 . . . . 16.66 108.549 175.02 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 215' ' ' ASN . . . . . . . . . . . . . 79.9 m-20 -118.75 121.14 39.38 Favored 'General case' 0 C--O 1.242 0.676 0 C-N-CA 124.588 1.155 . . . . 5.92 109.43 -169.823 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 216' ' ' PHE . . . . . . . . . . . . . 45.2 m-85 -117.22 116.32 27.04 Favored 'General case' 0 C--O 1.239 0.513 0 C-N-CA 123.64 0.776 . . . . 8.9 110.095 178.307 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 217' ' ' GLY . . . . . . . . . . . . . . . . . . . . 0 CA--C 1.533 1.173 0 CA-C-O 122.979 1.322 . . . . 12.68 114.76 -178.333 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 301' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 302' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 303' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 304' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_