data_2kdk_oneline save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_oneline _Structure_validation_oneline.Sf_category structure_validation _Structure_validation_oneline.Sf_framecode Structure_validation_oneline _Structure_validation_oneline.Entry_ID ? _Structure_validation_oneline.List_ID 1 _Structure_validation_oneline.PDB_accession_code 2kdk _Structure_validation_oneline.Date_analyzed 2016-10-07 loop_ _Oneline_analysis_software.Software_ID _Oneline_analysis_software.Software_label _Oneline_analysis_software.Method_ID _Oneline_analysis_software.Method_label _Oneline_analysis_software.Entry_ID _Oneline_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Oneline_analysis.ID _Oneline_analysis.PDB_model_num _Oneline_analysis.Hydrogen_positions _Oneline_analysis.MolProbity_flips _Oneline_analysis.Cyrange_core_flag _Oneline_analysis.Assembly_ID _Oneline_analysis.Macromolecule_types _Oneline_analysis.Clashscore _Oneline_analysis.Clashscore_B_under_40 _Oneline_analysis.Cbeta_outlier_count _Oneline_analysis.Cbeta_count _Oneline_analysis.Rotamer_outlier_count _Oneline_analysis.Rotamer_count _Oneline_analysis.Ramachandran_outlier_count _Oneline_analysis.Ramachandran_allowed_count _Oneline_analysis.Ramachandran_favored_count _Oneline_analysis.Ramachandran_count _Oneline_analysis.Bond_outlier_count _Oneline_analysis.Bond_count _Oneline_analysis.Percent_bond_outlier _Oneline_analysis.Percent_residues_with_bond_outlier _Oneline_analysis.Angle_outlier_count _Oneline_analysis.Angle_count _Oneline_analysis.Percent_angle_outlier _Oneline_analysis.Percent_residues_with_angle_outlier _Oneline_analysis.MolProbity_score _Oneline_analysis.RNA_phosphate_perpendicular_outlier_count _Oneline_analysis.RNA_phosphate_perpendicular_count _Oneline_analysis.RNA_suite_outlier_count _Oneline_analysis.RNA_suite_count _Oneline_analysis.Entry_ID _Oneline_analysis.Structure_validation_oneline_list_ID . 001 nuclear orig core . protein 2.97 2.97 2 100 13 95 4 10 88 102 0 415 0.00 0.00 1 517 0.19 0.96 2.59 0 0 0 0 . 1 . 002 nuclear orig core . protein 1.19 1.19 3 100 16 95 8 8 86 102 0 415 0.00 0.00 3 517 0.58 2.88 2.44 0 0 0 0 . 1 . 003 nuclear orig core . protein 2.97 2.97 1 100 16 95 4 11 87 102 0 415 0.00 0.00 1 517 0.19 0.96 2.67 0 0 0 0 . 1 . 004 nuclear orig core . protein 0.59 0.59 3 100 17 95 4 12 86 102 0 415 0.00 0.00 0 517 0.00 0.00 2.32 0 0 0 0 . 1 . 005 nuclear orig core . protein 3.56 3.56 5 100 16 95 4 13 85 102 0 415 0.00 0.00 2 517 0.39 1.92 2.77 0 0 0 0 . 1 . 006 nuclear orig core . protein 1.78 1.78 3 100 16 95 5 11 86 102 0 415 0.00 0.00 1 517 0.19 0.96 2.54 0 0 0 0 . 1 . 007 nuclear orig core . protein 0.59 0.59 5 100 22 95 5 11 86 102 0 415 0.00 0.00 2 517 0.39 1.92 2.41 0 0 0 0 . 1 . 008 nuclear orig core . protein 2.97 2.97 3 100 18 95 3 11 88 102 0 415 0.00 0.00 2 517 0.39 1.92 2.69 0 0 0 0 . 1 . 009 nuclear orig core . protein 1.78 1.78 2 100 14 95 5 7 90 102 0 415 0.00 0.00 3 517 0.58 2.88 2.42 0 0 0 0 . 1 . 010 nuclear orig core . protein 2.97 2.97 4 100 22 95 4 12 86 102 0 415 0.00 0.00 1 517 0.19 0.96 2.80 0 0 0 0 . 1 . 001 nuclear orig full . protein 2.65 2.65 2 112 13 107 5 11 100 116 0 471 0.00 0.00 1 587 0.17 0.85 2.51 0 0 0 0 . 1 . 002 nuclear orig full . protein 1.06 1.06 3 112 17 107 9 11 96 116 0 471 0.00 0.00 3 587 0.51 2.54 2.42 0 0 0 0 . 1 . 003 nuclear orig full . protein 3.17 3.17 2 112 16 107 5 16 95 116 0 471 0.00 0.00 1 587 0.17 0.85 2.71 0 0 0 0 . 1 . 004 nuclear orig full . protein 0.53 0.53 3 112 18 107 6 14 96 116 0 471 0.00 0.00 0 587 0.00 0.00 2.31 0 0 0 0 . 1 . 005 nuclear orig full . protein 3.17 3.17 5 112 17 107 6 17 93 116 0 471 0.00 0.00 2 587 0.34 1.69 2.75 0 0 0 0 . 1 . 006 nuclear orig full . protein 1.59 1.59 3 112 16 107 8 12 96 116 0 471 0.00 0.00 1 587 0.17 0.85 2.49 0 0 0 0 . 1 . 007 nuclear orig full . protein 0.53 0.53 5 112 23 107 7 12 97 116 0 471 0.00 0.00 2 587 0.34 1.69 2.38 0 0 0 0 . 1 . 008 nuclear orig full . protein 3.17 3.17 3 112 19 107 4 15 97 116 0 471 0.00 0.00 2 587 0.34 1.69 2.74 0 0 0 0 . 1 . 009 nuclear orig full . protein 1.59 1.59 2 112 14 107 5 11 100 116 0 471 0.00 0.00 3 587 0.51 2.54 2.39 0 0 0 0 . 1 . 010 nuclear orig full . protein 2.65 2.65 4 112 22 107 6 14 96 116 0 471 0.00 0.00 1 587 0.17 0.85 2.75 0 0 0 0 . 1 . 001 nuclear build core . protein 13.64 13.64 2 100 14 95 4 10 88 102 0 415 0.00 0.00 1 517 0.19 0.96 3.17 0 0 0 0 . 1 . 002 nuclear build core . protein 10.08 10.08 3 100 17 95 8 8 86 102 0 415 0.00 0.00 3 517 0.58 2.88 3.15 0 0 0 0 . 1 . 003 nuclear build core . protein 11.26 11.26 1 100 17 95 4 11 87 102 0 415 0.00 0.00 1 517 0.19 0.96 3.17 0 0 0 0 . 1 . 004 nuclear build core . protein 10.68 10.68 3 100 18 95 4 12 86 102 0 415 0.00 0.00 0 517 0.00 0.00 3.19 0 0 0 0 . 1 . 005 nuclear build core . protein 16.01 16.01 5 100 16 95 4 13 85 102 0 415 0.00 0.00 2 517 0.39 1.92 3.33 0 0 0 0 . 1 . 006 nuclear build core . protein 13.64 13.64 3 100 16 95 5 11 86 102 0 415 0.00 0.00 1 517 0.19 0.96 3.25 0 0 0 0 . 1 . 007 nuclear build core . protein 10.68 10.68 5 100 22 95 5 11 86 102 0 415 0.00 0.00 2 517 0.39 1.92 3.25 0 0 0 0 . 1 . 008 nuclear build core . protein 11.27 11.27 3 100 18 95 3 11 88 102 0 415 0.00 0.00 2 517 0.39 1.92 3.17 0 0 0 0 . 1 . 009 nuclear build core . protein 10.68 10.68 2 100 15 95 5 7 90 102 0 415 0.00 0.00 3 517 0.58 2.88 3.05 0 0 0 0 . 1 . 010 nuclear build core . protein 11.27 11.27 4 100 22 95 4 12 86 102 0 415 0.00 0.00 1 517 0.19 0.96 3.28 0 0 0 0 . 1 . 001 nuclear build full . protein 12.18 12.18 2 112 14 107 5 11 100 116 0 471 0.00 0.00 1 587 0.17 0.85 3.08 0 0 0 0 . 1 . 002 nuclear build full . protein 9.00 9.00 3 112 18 107 9 11 96 116 0 471 0.00 0.00 3 587 0.51 2.54 3.11 0 0 0 0 . 1 . 003 nuclear build full . protein 10.05 10.05 2 112 17 107 5 16 95 116 0 471 0.00 0.00 1 587 0.17 0.85 3.14 0 0 0 0 . 1 . 004 nuclear build full . protein 9.53 9.53 3 112 19 107 6 14 96 116 0 471 0.00 0.00 0 587 0.00 0.00 3.15 0 0 0 0 . 1 . 005 nuclear build full . protein 14.29 14.29 5 112 17 107 6 17 93 116 0 471 0.00 0.00 2 587 0.34 1.69 3.31 0 0 0 0 . 1 . 006 nuclear build full . protein 12.18 12.18 3 112 16 107 8 12 96 116 0 471 0.00 0.00 1 587 0.17 0.85 3.19 0 0 0 0 . 1 . 007 nuclear build full . protein 9.53 9.53 5 112 23 107 7 12 97 116 0 471 0.00 0.00 2 587 0.34 1.69 3.20 0 0 0 0 . 1 . 008 nuclear build full . protein 10.59 10.59 3 112 19 107 4 15 97 116 0 471 0.00 0.00 2 587 0.34 1.69 3.18 0 0 0 0 . 1 . 009 nuclear build full . protein 9.53 9.53 2 112 15 107 5 11 100 116 0 471 0.00 0.00 3 587 0.51 2.54 3.01 0 0 0 0 . 1 . 010 nuclear build full . protein 10.06 10.06 4 112 22 107 6 14 96 116 0 471 0.00 0.00 1 587 0.17 0.85 3.22 0 0 0 0 . 1 . 001 nuclear nobuild core . protein 13.64 13.64 2 100 13 95 4 10 88 102 0 415 0.00 0.00 1 517 0.19 0.96 3.14 0 0 0 0 . 1 . 002 nuclear nobuild core . protein 10.08 10.08 3 100 16 95 8 8 86 102 0 415 0.00 0.00 3 517 0.58 2.88 3.13 0 0 0 0 . 1 . 003 nuclear nobuild core . protein 11.27 11.27 1 100 16 95 4 11 87 102 0 415 0.00 0.00 1 517 0.19 0.96 3.15 0 0 0 0 . 1 . 004 nuclear nobuild core . protein 10.68 10.68 3 100 17 95 4 12 86 102 0 415 0.00 0.00 0 517 0.00 0.00 3.17 0 0 0 0 . 1 . 005 nuclear nobuild core . protein 16.01 16.01 5 100 16 95 4 13 85 102 0 415 0.00 0.00 2 517 0.39 1.92 3.33 0 0 0 0 . 1 . 006 nuclear nobuild core . protein 13.64 13.64 3 100 16 95 5 11 86 102 0 415 0.00 0.00 1 517 0.19 0.96 3.25 0 0 0 0 . 1 . 007 nuclear nobuild core . protein 10.68 10.68 5 100 22 95 5 11 86 102 0 415 0.00 0.00 2 517 0.39 1.92 3.25 0 0 0 0 . 1 . 008 nuclear nobuild core . protein 11.27 11.27 3 100 18 95 3 11 88 102 0 415 0.00 0.00 2 517 0.39 1.92 3.17 0 0 0 0 . 1 . 009 nuclear nobuild core . protein 10.68 10.68 2 100 14 95 5 7 90 102 0 415 0.00 0.00 3 517 0.58 2.88 3.03 0 0 0 0 . 1 . 010 nuclear nobuild core . protein 11.27 11.27 4 100 22 95 4 12 86 102 0 415 0.00 0.00 1 517 0.19 0.96 3.28 0 0 0 0 . 1 . 001 nuclear nobuild full . protein 12.18 12.18 2 112 13 107 5 11 100 116 0 471 0.00 0.00 1 587 0.17 0.85 3.06 0 0 0 0 . 1 . 002 nuclear nobuild full . protein 9.00 9.00 3 112 17 107 9 11 96 116 0 471 0.00 0.00 3 587 0.51 2.54 3.09 0 0 0 0 . 1 . 003 nuclear nobuild full . protein 10.06 10.06 2 112 16 107 5 16 95 116 0 471 0.00 0.00 1 587 0.17 0.85 3.12 0 0 0 0 . 1 . 004 nuclear nobuild full . protein 9.53 9.53 3 112 18 107 6 14 96 116 0 471 0.00 0.00 0 587 0.00 0.00 3.13 0 0 0 0 . 1 . 005 nuclear nobuild full . protein 14.29 14.29 5 112 17 107 6 17 93 116 0 471 0.00 0.00 2 587 0.34 1.69 3.31 0 0 0 0 . 1 . 006 nuclear nobuild full . protein 12.18 12.18 3 112 16 107 8 12 96 116 0 471 0.00 0.00 1 587 0.17 0.85 3.19 0 0 0 0 . 1 . 007 nuclear nobuild full . protein 9.53 9.53 5 112 23 107 7 12 97 116 0 471 0.00 0.00 2 587 0.34 1.69 3.20 0 0 0 0 . 1 . 008 nuclear nobuild full . protein 10.59 10.59 3 112 19 107 4 15 97 116 0 471 0.00 0.00 2 587 0.34 1.69 3.18 0 0 0 0 . 1 . 009 nuclear nobuild full . protein 9.53 9.53 2 112 14 107 5 11 100 116 0 471 0.00 0.00 3 587 0.51 2.54 2.99 0 0 0 0 . 1 . 010 nuclear nobuild full . protein 10.06 10.06 4 112 22 107 6 14 96 116 0 471 0.00 0.00 1 587 0.17 0.85 3.22 0 0 0 0 . 1 stop_ save_