data_1jdg_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1jdg _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.537 3.257 1 O4'-C1'-N19 111.27 4.338 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.89 1 O4'-C1'-N19 111.375 4.468 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 O4'-C1'-N19 110.325 3.156 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 P-O3'-C3' 123.473 3.144 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.888 1 O4'-C1'-N19 111.357 4.447 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.139 0 O4'-C1'-N19 110.74 3.675 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.178 1 O4'-C1'-N19 114.252 8.066 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.835 1 O4'-C1'-N19 111.827 5.034 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.008 1 O4'-C1'-N19 111.583 4.729 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.965 1 O4'-C1'-N19 111.66 4.825 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.986 1 O4'-C1'-N19 111.422 4.528 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 12' ' ' BPA . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' B' B ' 1' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.35 1 O4'-C1'-N19 111.241 4.302 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 2' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.985 1 O4'-C1'-N19 111.729 4.911 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 3' B ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.881 1 O4'-C1'-N19 111.306 4.382 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 4' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.988 1 O4'-C1'-N19 111.301 4.376 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 5' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.14 1 O4'-C1'-N19 113.062 6.577 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 6' B ' DT' . . . . . 0.474 ' C4 ' ' C6 ' ' B' ' 7' B ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.283 1 O4'-C1'-N19 112.068 5.335 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 7' B ' DG' . . . . . 0.474 ' C6 ' ' C4 ' ' B' ' 6' B ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.142 0 O4'-C1'-N19 110.597 3.496 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 8' B ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.92 1 O4'-C1'-N19 111.05 4.063 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 9' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.873 1 O4'-C1'-N19 111.299 4.374 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 10' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.989 1 O4'-C1'-N19 111.182 4.228 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 11' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.0 1 O4'-C1'-N19 111.06 4.075 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.537 3.257 1 O4'-C1'-N19 111.27 4.338 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.89 1 O4'-C1'-N19 111.375 4.468 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 O4'-C1'-N19 110.325 3.156 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 P-O3'-C3' 123.473 3.144 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.888 1 O4'-C1'-N19 111.357 4.447 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DA' . . . . . 0.414 ' C6 ' ' H11' ' A' ' 12' ' ' BPA . . . . . . . . 0 C5'--C4' 1.536 3.139 0 O4'-C1'-N19 110.74 3.675 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.178 1 O4'-C1'-N19 114.252 8.066 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.835 1 O4'-C1'-N19 111.827 5.034 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.008 1 O4'-C1'-N19 111.583 4.729 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.965 1 O4'-C1'-N19 111.66 4.825 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.986 1 O4'-C1'-N19 111.422 4.528 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 12' ' ' BPA . . . . . 0.414 ' H11' ' C6 ' ' A' ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 1' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.35 1 O4'-C1'-N19 111.241 4.302 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 2' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.985 1 O4'-C1'-N19 111.729 4.911 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 3' B ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.881 1 O4'-C1'-N19 111.306 4.382 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 4' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.988 1 O4'-C1'-N19 111.301 4.376 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 5' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.14 1 O4'-C1'-N19 113.062 6.577 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 6' B ' DT' . . . . . 0.474 ' C4 ' ' C6 ' ' B' ' 7' B ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.283 1 O4'-C1'-N19 112.068 5.335 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 7' B ' DG' . . . . . 0.474 ' C6 ' ' C4 ' ' B' ' 6' B ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.142 0 O4'-C1'-N19 110.597 3.496 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 8' B ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.92 1 O4'-C1'-N19 111.05 4.063 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 9' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.873 1 O4'-C1'-N19 111.299 4.374 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 10' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.989 1 O4'-C1'-N19 111.182 4.228 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 11' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.0 1 O4'-C1'-N19 111.06 4.075 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.537 3.257 1 O4'-C1'-N19 111.27 4.338 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.89 1 O4'-C1'-N19 111.375 4.468 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 O4'-C1'-N19 110.325 3.156 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.904 0 P-O3'-C3' 123.473 3.144 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.888 1 O4'-C1'-N19 111.357 4.447 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DA' . . . . . 0.414 ' C6 ' ' H11' ' A' ' 12' ' ' BPA . . . . . . . . 0 C5'--C4' 1.536 3.139 0 O4'-C1'-N19 110.74 3.675 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.178 1 O4'-C1'-N19 114.252 8.066 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.835 1 O4'-C1'-N19 111.827 5.034 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.008 1 O4'-C1'-N19 111.583 4.729 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.965 1 O4'-C1'-N19 111.66 4.825 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.986 1 O4'-C1'-N19 111.422 4.528 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 12' ' ' BPA . . . . . 0.414 ' H11' ' C6 ' ' A' ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 1' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.538 3.35 1 O4'-C1'-N19 111.241 4.302 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 2' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.985 1 O4'-C1'-N19 111.729 4.911 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 3' B ' DT' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.881 1 O4'-C1'-N19 111.306 4.382 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 4' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.988 1 O4'-C1'-N19 111.301 4.376 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 5' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.536 3.14 1 O4'-C1'-N19 113.062 6.577 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 6' B ' DT' . . . . . 0.474 ' C4 ' ' C6 ' ' B' ' 7' B ' DG' . . . . . . . . 0 C5'--C4' 1.537 3.283 1 O4'-C1'-N19 112.068 5.335 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 7' B ' DG' . . . . . 0.474 ' C6 ' ' C4 ' ' B' ' 6' B ' DT' . . . . . . . . 0 C5'--C4' 1.536 3.142 0 O4'-C1'-N19 110.597 3.496 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 8' B ' DA' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.92 1 O4'-C1'-N19 111.05 4.063 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 9' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.534 2.873 1 O4'-C1'-N19 111.299 4.374 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 10' B ' DC' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 2.989 1 O4'-C1'-N19 111.182 4.228 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 11' B ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.535 3.0 1 O4'-C1'-N19 111.06 4.075 . . . . 0.0 . . . . . . . . . . 1 1 . 1 stop_ save_