data_1amd_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1amd _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.549 4.789 0 C4'-C3'-O3' 103.099 -3.273 . . . . 24.920000000000002 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DG' . . . . . 0.528 ' C8 ' ' H72' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 O4'--C4' 1.405 -3.769 7 O4'-C1'-N19 96.555 -14.056 . . . . 26.16 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DT' . . . . . 0.528 ' H72' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 1 C5'--C4' 1.554 5.361 0 O4'-C1'-N19 110.784 3.73 . . . . 24.59 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.545 4.238 2 P-O3'-C3' 127.748 6.707 . . . . 21.859999999999999 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.549 4.731 2 O4'-C1'-N19 112.722 6.152 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.551 5.058 2 P-O3'-C3' 126.051 5.293 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.627 14.556 2 N19-C1'-C2' 102.976 -7.015 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.587 0 P-O3'-C3' 123.811 3.426 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' B' B ' 9' ' ' ' DT' . . . . . 0.472 H2'' " OH'" ' B' ' 13' ' ' BNR . . . . . . . . 0 C5'--C4' 1.534 2.87 0 O5'-C5'-C4' 114.985 3.418 . . . . 20.329999999999998 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 10' ' ' ' DA' . . . . . 0.778 " H1'" " O4'" ' B' ' 11' ' ' ' DC' . . . . . . . . 0 P--O5' 1.622 2.891 1 P-O3'-C3' 126.672 5.81 . . . . 22.18 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 11' ' ' ' DC' . . . . . 0.778 " O4'" " H1'" ' B' ' 10' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.748 2 O4'-C1'-N19 114.394 8.243 . . . . 23.07 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DA' . . . . . 0.658 " O5'" " H2'" ' B' ' 12' ' ' ' DA' . . . . . . . . 1 C5'--C4' 1.55 4.872 2 O4'-C1'-N19 114.014 7.767 . . . . 21.949999999999999 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' BNR . . . . . 0.592 HO3A HO3' ' B' ' 13' ' ' BNR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.549 4.789 0 C4'-C3'-O3' 103.099 -3.273 . . . . 24.92 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DG' . . . . . 0.489 ' C8 ' ' C7 ' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 O4'--C4' 1.405 -3.769 7 O4'-C1'-N19 96.555 -14.056 . . . . 26.16 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DT' . . . . . 0.489 ' C7 ' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 1 C5'--C4' 1.554 5.361 0 O4'-C1'-N19 110.784 3.73 . . . . 24.59 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.545 4.238 2 P-O3'-C3' 127.748 6.707 . . . . 21.86 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.549 4.731 2 O4'-C1'-N19 112.722 6.152 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.551 5.058 2 P-O3'-C3' 126.051 5.293 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.627 14.556 2 N19-C1'-C2' 102.976 -7.015 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.587 0 P-O3'-C3' 123.811 3.426 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 9' ' ' ' DT' . . . . . 0.429 H2'' " OH'" ' B' ' 13' ' ' BNR . . . . . . . . 0 C5'--C4' 1.534 2.87 0 O5'-C5'-C4' 114.985 3.418 . . . . 20.33 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 10' ' ' ' DA' . . . . . 0.821 " H1'" " O4'" ' B' ' 11' ' ' ' DC' . . . . . . . . 0 P--O5' 1.622 2.891 1 P-O3'-C3' 126.672 5.81 . . . . 22.18 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 11' ' ' ' DC' . . . . . 0.821 " O4'" " H1'" ' B' ' 10' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.748 2 O4'-C1'-N19 114.394 8.243 . . . . 23.07 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DA' . . . . . 0.524 " O4'" " H1'" ' B' ' 13' ' ' BNR . . . . . . . . 1 C5'--C4' 1.55 4.872 2 O4'-C1'-N19 114.014 7.767 . . . . 21.95 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 13' ' ' BNR . . . . . 0.582 ' H4D' ' C1C' ' B' ' 13' ' ' BNR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.549 4.789 0 C4'-C3'-O3' 103.099 -3.273 . . . . 24.920000000000002 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DG' . . . . . 0.489 ' C8 ' ' C7 ' ' A' ' 3' ' ' ' DT' . . . . . . . . 0 O4'--C4' 1.405 -3.769 7 O4'-C1'-N19 96.555 -14.056 . . . . 26.16 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DT' . . . . . 0.489 ' C7 ' ' C8 ' ' A' ' 2' ' ' ' DG' . . . . . . . . 1 C5'--C4' 1.554 5.361 0 O4'-C1'-N19 110.784 3.73 . . . . 24.59 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.545 4.238 2 P-O3'-C3' 127.748 6.707 . . . . 21.859999999999999 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.549 4.731 2 O4'-C1'-N19 112.722 6.152 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 1 C5'--C4' 1.551 5.058 2 P-O3'-C3' 126.051 5.293 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 7' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 C5'--C4' 1.627 14.556 2 N19-C1'-C2' 102.976 -7.015 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 8' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.54 3.587 0 P-O3'-C3' 123.811 3.426 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 9' ' ' ' DT' . . . . . 0.429 H2'' " OH'" ' B' ' 13' ' ' BNR . . . . . . . . 0 C5'--C4' 1.534 2.87 0 O5'-C5'-C4' 114.985 3.418 . . . . 20.329999999999998 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 10' ' ' ' DA' . . . . . 0.821 " H1'" " O4'" ' B' ' 11' ' ' ' DC' . . . . . . . . 0 P--O5' 1.622 2.891 1 P-O3'-C3' 126.672 5.81 . . . . 22.18 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 11' ' ' ' DC' . . . . . 0.821 " O4'" " H1'" ' B' ' 10' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.533 2.748 2 O4'-C1'-N19 114.394 8.243 . . . . 23.07 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DA' . . . . . 0.524 " O4'" " H1'" ' B' ' 13' ' ' BNR . . . . . . . . 1 C5'--C4' 1.55 4.872 2 O4'-C1'-N19 114.014 7.767 . . . . 21.949999999999999 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' BNR . . . . . 0.582 ' H4D' ' C1C' ' B' ' 13' ' ' BNR . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 stop_ save_