data_1np5_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1np5 _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DG' . . . . . 0.551 " H1'" ' OP1' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.232 1 O4'-C1'-N19 111.02 4.025 . . . . 0.58 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DA' . . . . . 0.703 ' N7 ' ' N7 ' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C2'--C1' 1.472 -3.515 2 N19-C1'-C2' 104.337 -6.164 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DC' . . . . . 0.668 " O5'" H2'' ' A' ' 2' ' ' ' DA' . . . . . . . . 1 P--O5' 1.635 4.2 1 O5'-C5'-C4' 117.618 5.298 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . 0.546 " O5'" H2'' ' A' ' 3' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.497 -2.125 0 O4'-C1'-N19 110.624 3.531 . . . . 0.24 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DA' . . . . . 0.89 H2'' " O5'" ' A' ' 6' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.459 3.01 2 O4'-C1'-N19 111.486 4.608 . . . . 0.22 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' DC' . . . . . 0.89 " O5'" H2'' ' A' ' 5' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.638 2 O5'-C5'-C4' 116.776 4.697 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DG' . . . . . 0.785 " O5'" H2'' ' A' ' 6' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.498 -1.986 0 O4'-C1'-N19 110.827 3.784 . . . . 0.22 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DA' . . . . . 1.024 " H2'" " O4'" ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.565 0 O4'-C4'-C3' 108.636 3.036 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DC' . . . . . 1.024 " O4'" " H2'" ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.369 1 O4'-C1'-N19 111.155 4.193 . . . . 0.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 101' ' ' ' DG' . . . . . 0.551 " H1'" ' OP1' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.228 1 O4'-C1'-N19 111.058 4.073 . . . . 0.59 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 102' ' ' ' DA' . . . . . 0.742 H2'' " O5'" ' B' ' 103' ' ' ' DC' . . . . . . . . 0 C2'--C1' 1.472 -3.49 2 N19-C1'-C2' 104.405 -6.122 . . . . 0.21 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 103' ' ' ' DC' . . . . . 0.742 " O5'" H2'' ' B' ' 102' ' ' ' DA' . . . . . . . . 1 P--O5' 1.634 4.095 1 O5'-C5'-C4' 116.496 4.497 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 104' ' ' ' DG' . . . . . 0.543 " O5'" H2'' ' B' ' 103' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.497 -2.141 0 O4'-C1'-N19 110.625 3.531 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 105' ' ' ' DA' . . . . . 0.913 H2'' " O5'" ' B' ' 106' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.458 2.915 2 O4'-C1'-N19 111.477 4.597 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 106' ' ' ' DC' . . . . . 0.913 " O5'" H2'' ' B' ' 105' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.523 2 C5'-C4'-C3' 107.917 -4.522 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 107' ' ' ' DG' . . . . . 0.782 " O5'" H2'' ' B' ' 106' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.499 -1.944 0 O4'-C1'-N19 110.765 3.706 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 108' ' ' ' DA' . . . . . 1.021 " H2'" " O4'" ' B' ' 109' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.582 0 O4'-C4'-C3' 108.604 3.004 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 109' ' ' ' DC' . . . . . 1.021 " O4'" " H2'" ' B' ' 108' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.385 1 O4'-C1'-N19 111.321 4.402 . . . . 0.76 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DG' . . . . . 0.53 ' C8 ' ' C2 ' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.232 1 O4'-C1'-N19 111.02 4.025 . . . . 0.37 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DA' . . . . . 0.703 ' N7 ' ' N7 ' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C2'--C1' 1.472 -3.515 2 N19-C1'-C2' 104.337 -6.164 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DC' . . . . . 0.672 " O5'" H2'' ' A' ' 2' ' ' ' DA' . . . . . . . . 1 P--O5' 1.635 4.2 1 O5'-C5'-C4' 117.618 5.298 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . 0.545 " O5'" H2'' ' A' ' 3' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.497 -2.125 0 O4'-C1'-N19 110.624 3.531 . . . . 0.24 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DA' . . . . . 0.908 H2'' " O5'" ' A' ' 6' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.459 3.01 2 O4'-C1'-N19 111.486 4.608 . . . . 0.22 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' DC' . . . . . 0.908 " O5'" H2'' ' A' ' 5' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.638 2 O5'-C5'-C4' 116.776 4.697 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DG' . . . . . 0.793 " O5'" H2'' ' A' ' 6' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.498 -1.986 0 O4'-C1'-N19 110.827 3.784 . . . . 0.22 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DA' . . . . . 1.023 " H2'" " O4'" ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.565 0 O4'-C4'-C3' 108.636 3.036 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DC' . . . . . 1.023 " O4'" " H2'" ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.369 1 O4'-C1'-N19 111.155 4.193 . . . . 0.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 101' ' ' ' DG' . . . . . 0.524 ' C8 ' ' C2 ' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.228 1 O4'-C1'-N19 111.058 4.073 . . . . 0.38 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 102' ' ' ' DA' . . . . . 0.745 H2'' " O5'" ' B' ' 103' ' ' ' DC' . . . . . . . . 0 C2'--C1' 1.472 -3.49 2 N19-C1'-C2' 104.405 -6.122 . . . . 0.21 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 103' ' ' ' DC' . . . . . 0.745 " O5'" H2'' ' B' ' 102' ' ' ' DA' . . . . . . . . 1 P--O5' 1.634 4.095 1 O5'-C5'-C4' 116.496 4.497 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 104' ' ' ' DG' . . . . . 0.54 " O4'" ' N2 ' ' A' ' 4' ' ' ' DG' . . . . . . . . 0 C3'--C2' 1.497 -2.141 0 O4'-C1'-N19 110.625 3.531 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 105' ' ' ' DA' . . . . . 0.938 H2'' " O5'" ' B' ' 106' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.458 2.915 2 O4'-C1'-N19 111.477 4.597 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 106' ' ' ' DC' . . . . . 0.938 " O5'" H2'' ' B' ' 105' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.523 2 C5'-C4'-C3' 107.917 -4.522 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 107' ' ' ' DG' . . . . . 0.791 " O5'" H2'' ' B' ' 106' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.499 -1.944 0 O4'-C1'-N19 110.765 3.706 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 108' ' ' ' DA' . . . . . 1.023 " H2'" " O4'" ' B' ' 109' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.582 0 O4'-C4'-C3' 108.604 3.004 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 109' ' ' ' DC' . . . . . 1.023 " O4'" " H2'" ' B' ' 108' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.385 1 O4'-C1'-N19 111.321 4.402 . . . . 0.3 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DG' . . . . . 0.53 ' C8 ' ' C2 ' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.232 1 O4'-C1'-N19 111.02 4.025 . . . . 0.37 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DA' . . . . . 0.703 ' N7 ' ' N7 ' ' B' ' 102' ' ' ' DA' . . . . . . . . 0 C2'--C1' 1.472 -3.515 2 N19-C1'-C2' 104.337 -6.164 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DC' . . . . . 0.672 " O5'" H2'' ' A' ' 2' ' ' ' DA' . . . . . . . . 1 P--O5' 1.635 4.2 1 O5'-C5'-C4' 117.618 5.298 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . 0.545 " O5'" H2'' ' A' ' 3' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.497 -2.125 0 O4'-C1'-N19 110.624 3.531 . . . . 0.24 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DA' . . . . . 0.908 H2'' " O5'" ' A' ' 6' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.459 3.01 2 O4'-C1'-N19 111.486 4.608 . . . . 0.22 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' DC' . . . . . 0.908 " O5'" H2'' ' A' ' 5' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.532 2.638 2 O5'-C5'-C4' 116.776 4.697 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DG' . . . . . 0.793 " O5'" H2'' ' A' ' 6' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.498 -1.986 0 O4'-C1'-N19 110.827 3.784 . . . . 0.22 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DA' . . . . . 1.023 " H2'" " O4'" ' A' ' 9' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.565 0 O4'-C4'-C3' 108.636 3.036 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DC' . . . . . 1.023 " O4'" " H2'" ' A' ' 8' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.369 1 O4'-C1'-N19 111.155 4.193 . . . . 0.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 101' ' ' ' DG' . . . . . 0.524 ' C8 ' ' C2 ' ' A' ' 2' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.529 2.228 1 O4'-C1'-N19 111.058 4.073 . . . . 0.38 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 102' ' ' ' DA' . . . . . 0.745 H2'' " O5'" ' B' ' 103' ' ' ' DC' . . . . . . . . 0 C2'--C1' 1.472 -3.49 2 N19-C1'-C2' 104.405 -6.122 . . . . 0.21 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 103' ' ' ' DC' . . . . . 0.745 " O5'" H2'' ' B' ' 102' ' ' ' DA' . . . . . . . . 1 P--O5' 1.634 4.095 1 O5'-C5'-C4' 116.496 4.497 . . . . 0.27 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 104' ' ' ' DG' . . . . . 0.54 " O4'" ' N2 ' ' A' ' 4' ' ' ' DG' . . . . . . . . 0 C3'--C2' 1.497 -2.141 0 O4'-C1'-N19 110.625 3.531 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 105' ' ' ' DA' . . . . . 0.938 H2'' " O5'" ' B' ' 106' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.458 2.915 2 O4'-C1'-N19 111.477 4.597 . . . . 0.23 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 106' ' ' ' DC' . . . . . 0.938 " O5'" H2'' ' B' ' 105' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.531 2.523 2 C5'-C4'-C3' 107.917 -4.522 . . . . 0.26 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 107' ' ' ' DG' . . . . . 0.791 " O5'" H2'' ' B' ' 106' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.499 -1.944 0 O4'-C1'-N19 110.765 3.706 . . . . 0.23 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 108' ' ' ' DA' . . . . . 1.023 " H2'" " O4'" ' B' ' 109' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.492 -2.582 0 O4'-C4'-C3' 108.604 3.004 . . . . 0.39 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 109' ' ' ' DC' . . . . . 1.023 " O4'" " H2'" ' B' ' 108' ' ' ' DA' . . . . . . . . 0 C5'--C4' 1.538 3.385 1 O4'-C1'-N19 111.321 4.402 . . . . 0.3 . . . . . . . . . . 2 2 . 1 stop_ save_