data_2kd4_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 2kd4 _Structure_validation_residue.Date_analyzed 2016-10-07 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' G' . . . . . 0.419 " H2'" ' C5 ' ' A' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.399 -4.485 3 O4'-C4'-C3' 113.385 5.632 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' C' . . . . . 0.419 ' C5 ' " H2'" ' A' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.401 -4.36 4 C3'-C2'-C1' 107.616 6.796 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.484 -3.685 0 O4'-C1'-C2' 110.776 3.126 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' G' . . . . . 0.506 " H2'" ' C6 ' ' A' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.408 -3.751 4 C4'-C3'-C2' 97.79 -4.91 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' C' . . . . . 0.506 ' C6 ' " H2'" ' A' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.411 -3.464 0 C5'-C4'-C3' 110.044 -3.638 . 0.0 '__' . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' G' . . . . . 0.571 " H1'" " C5'" ' A' ' 7' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.419 -2.822 1 C3'-C2'-C1' 105.712 4.68 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' G' . . . . . 0.571 " C5'" " H1'" ' A' ' 6' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.399 -4.483 4 O5'-C5'-C4' 125.352 10.823 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' C' . . . . . 0.54 " H2'" ' C8 ' ' A' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.102 4 C3'-C2'-C1' 106.936 6.04 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 1' ' ' ' G' . . . . . 0.446 " H2'" ' C5 ' ' B' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.395 -4.822 3 O4'-C4'-C3' 112.985 5.346 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 2' ' ' ' C' . . . . . 0.446 ' C5 ' " H2'" ' B' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.399 -4.541 4 C3'-C2'-C1' 106.906 6.006 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.487 -3.431 0 O4'-C1'-C2' 111.913 3.938 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' B' B ' 4' ' ' ' G' . . . . . 0.521 " H2'" ' C6 ' ' B' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.405 -3.989 2 C4'-C3'-C2' 97.739 -4.961 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 5' ' ' ' C' . . . . . 0.521 ' C6 ' " H2'" ' B' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.418 -2.885 1 C5'-C4'-C3' 109.062 -4.292 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 6' ' ' ' G' . . . . . 0.449 " C1'" H5'' ' B' ' 7' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.537 2.077 2 C3'-C2'-C1' 106.504 5.56 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 7' ' ' ' G' . . . . . 0.596 " H5'" ' C8 ' ' B' ' 7' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.407 -3.824 4 O5'-C5'-C4' 122.172 8.552 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 8' ' ' ' C' . . . . . 0.549 " H2'" ' C8 ' ' B' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.093 4 C3'-C2'-C1' 106.354 5.393 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' PRL . . . . . 0.448 ' C7 ' ' C8 ' ' A' ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 17' ' ' PRL . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' G' . . . . . 0.476 " H2'" ' C5 ' ' A' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.399 -4.485 3 O4'-C4'-C3' 113.385 5.632 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' C' . . . . . 0.476 ' C5 ' " H2'" ' A' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.401 -4.36 4 C3'-C2'-C1' 107.616 6.796 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.484 -3.685 0 O4'-C1'-C2' 110.776 3.126 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' G' . . . . . 0.45 " H2'" ' C6 ' ' A' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.408 -3.751 4 C4'-C3'-C2' 97.79 -4.91 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' C' . . . . . 0.45 ' C6 ' " H2'" ' A' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.411 -3.464 0 C5'-C4'-C3' 110.044 -3.638 . 0.0 '__' . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' G' . . . . . 0.575 " H1'" H5'' ' A' ' 7' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.419 -2.822 1 C3'-C2'-C1' 105.712 4.68 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' G' . . . . . 0.752 ' C8 ' " H2'" ' A' ' 8' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.399 -4.483 4 O5'-C5'-C4' 125.352 10.823 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' C' . . . . . 0.752 " H2'" ' C8 ' ' A' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.102 4 C3'-C2'-C1' 106.936 6.04 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 1' ' ' ' G' . . . . . 0.497 " H2'" ' C5 ' ' B' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.395 -4.822 3 O4'-C4'-C3' 112.985 5.346 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 2' ' ' ' C' . . . . . 0.497 ' C5 ' " H2'" ' B' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.399 -4.541 4 C3'-C2'-C1' 106.906 6.006 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.487 -3.431 0 O4'-C1'-C2' 111.913 3.938 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' B' B ' 4' ' ' ' G' . . . . . 0.483 " H2'" ' C6 ' ' B' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.405 -3.989 2 C4'-C3'-C2' 97.739 -4.961 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 5' ' ' ' C' . . . . . 0.483 ' C6 ' " H2'" ' B' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.418 -2.885 1 C5'-C4'-C3' 109.062 -4.292 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 6' ' ' ' G' . . . . . 0.659 " C1'" H5'' ' B' ' 7' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.537 2.077 2 C3'-C2'-C1' 106.504 5.56 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 7' ' ' ' G' . . . . . 0.797 ' C8 ' " H2'" ' B' ' 8' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.407 -3.824 4 O5'-C5'-C4' 122.172 8.552 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 8' ' ' ' C' . . . . . 0.797 " H2'" ' C8 ' ' B' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.093 4 C3'-C2'-C1' 106.354 5.393 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 17' ' ' PRL . . . . . 0.448 ' C7 ' ' C8 ' ' A' ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 17' ' ' PRL . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' G' . . . . . 0.476 " H2'" ' C5 ' ' A' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.399 -4.485 3 O4'-C4'-C3' 113.385 5.632 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' C' . . . . . 0.476 ' C5 ' " H2'" ' A' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.401 -4.36 4 C3'-C2'-C1' 107.616 6.796 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.484 -3.685 0 O4'-C1'-C2' 110.776 3.126 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' G' . . . . . 0.45 " H2'" ' C6 ' ' A' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.408 -3.751 4 C4'-C3'-C2' 97.79 -4.91 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' C' . . . . . 0.45 ' C6 ' " H2'" ' A' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.411 -3.464 0 C5'-C4'-C3' 110.044 -3.638 . 0.0 '__' . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' G' . . . . . 0.575 " H1'" H5'' ' A' ' 7' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.419 -2.822 1 C3'-C2'-C1' 105.712 4.68 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' G' . . . . . 0.752 ' C8 ' " H2'" ' A' ' 8' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.399 -4.483 4 O5'-C5'-C4' 125.352 10.823 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' C' . . . . . 0.752 " H2'" ' C8 ' ' A' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.102 4 C3'-C2'-C1' 106.936 6.04 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 1' ' ' ' G' . . . . . 0.497 " H2'" ' C5 ' ' B' ' 2' ' ' ' C' . . . . . . . . 1 O4'--C4' 1.395 -4.822 3 O4'-C4'-C3' 112.985 5.346 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 2' ' ' ' C' . . . . . 0.497 ' C5 ' " H2'" ' B' ' 1' ' ' ' G' . . . . . . . . 1 O4'--C4' 1.399 -4.541 4 C3'-C2'-C1' 106.906 6.006 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.487 -3.431 0 O4'-C1'-C2' 111.913 3.938 . 0.0 '__' . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' B' B ' 4' ' ' ' G' . . . . . 0.483 " H2'" ' C6 ' ' B' ' 5' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.405 -3.989 2 C4'-C3'-C2' 97.739 -4.961 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 5' ' ' ' C' . . . . . 0.483 ' C6 ' " H2'" ' B' ' 4' ' ' ' G' . . . . . . . . 0 O4'--C4' 1.418 -2.885 1 C5'-C4'-C3' 109.062 -4.292 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 6' ' ' ' G' . . . . . 0.659 " C1'" H5'' ' B' ' 7' ' ' ' G' . . . . . . . . 0 C5'--C4' 1.537 2.077 2 C3'-C2'-C1' 106.504 5.56 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 7' ' ' ' G' . . . . . 0.797 ' C8 ' " H2'" ' B' ' 8' ' ' ' C' . . . . . . . . 0 O4'--C4' 1.407 -3.824 4 O5'-C5'-C4' 122.172 8.552 . 0.0 '__' . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 8' ' ' ' C' . . . . . 0.797 " H2'" ' C8 ' ' B' ' 7' ' ' ' G' . . . . . . . . 1 C3'--C2' 1.48 -4.093 4 C3'-C2'-C1' 106.354 5.393 . 0.0 '__' . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' PRL . . . . . 0.448 ' C7 ' ' C8 ' ' A' ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 17' ' ' PRL . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_