data_1j4m_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1j4m _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ARG . . . . . 1.374 ' NH1' ' NE ' ' A' ' 1' ' ' ARG 0.766 0.0 OUTLIER . . . . . 2 N--CA 1.199 -12.994 1 N-CA-C 99.475 -4.269 . . . . 0.0 99.475 . . . . . . . . . 5 3 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' GLY . . . . . . . . . . . . . . . 105.17 45.89 1.31 Allowed Glycine 3 CA--C 1.241 -17.069 3 CA-C-N 75.598 -18.91 . . . . 0.0 114.951 171.229 . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' LYS . . . . . 0.731 ' HG3' ' CG ' ' A' ' 12' ' ' GLU . 0.1 OUTLIER -162.48 135.31 5.8 Favored 'General case' 0 C--N 1.28 -2.448 2 O-C-N 139.315 9.48 . . . . 0.0 107.315 149.557 . . . . . . . . 4 4 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' TRP . . . . . 0.547 ' CE3' ' CB ' ' A' ' 11' ' ' TYR . 0.0 OUTLIER -130.85 136.63 48.83 Favored 'General case' 0 C--N 1.306 -1.311 0 CA-C-N 113.362 -1.745 . . . . 0.0 109.043 179.719 . . . . . . . . 3 3 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' THR . . . . . 0.579 HG22 HG22 ' A' ' 10' ' ' THR . 0.0 OUTLIER -135.76 124.42 23.76 Favored 'General case' 0 C--N 1.299 -1.598 0 CA-C-N 114.416 -1.265 . . . . 0.0 107.726 -173.703 . . . . . . . . 3 3 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . 0.34 0.1 OUTLIER -146.66 131.64 18.18 Favored 'General case' 0 C--N 1.313 -0.996 0 CA-C-N 112.96 -1.927 . . . . 0.0 110.633 -178.563 . . . . . . . . 3 3 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ASN . . . . . . . . . . . . . 7.7 t30 65.43 15.79 10.2 Favored 'General case' 0 C--N 1.322 -0.591 0 O-C-N 126.914 2.634 . . . . 0.0 110.374 -178.301 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' GLY . . . . . . . . . . . . . . . 91.98 1.66 69.94 Favored Glycine 0 CA--C 1.523 0.546 0 CA-C-N 113.984 -1.462 . . . . 0.0 110.518 -179.758 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ILE . . . . . . . . . . . . . 1.4 mm -97.55 112.45 29.62 Favored 'Isoleucine or valine' 0 C--N 1.319 -0.732 0 N-CA-C 108.507 -0.923 . . . . 0.0 108.507 179.763 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' THR . . . . . 0.579 HG22 HG22 ' A' ' 5' ' ' THR . 30.2 m -81.23 136.64 35.84 Favored 'General case' 0 C--N 1.312 -1.035 0 CA-C-N 112.695 -2.048 . . . . 0.0 109.607 -179.325 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' TYR . . . . . 0.547 ' CB ' ' CE3' ' A' ' 4' ' ' TRP . 23.6 m-85 -138.95 106.9 5.68 Favored 'General case' 0 C--N 1.308 -1.199 0 CA-C-N 114.195 -1.366 . . . . 0.0 111.055 -178.711 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 12' ' ' GLU . . . . . 0.731 ' CG ' ' HG3' ' A' ' 3' ' ' LYS 0.415 4.7 mt-10 -97.82 83.89 3.25 Favored 'General case' 0 C--N 1.3 -1.579 0 CA-C-O 125.352 2.501 . . . . 0.0 112.369 178.119 . . . . . . . . 3 3 . 1 . 001 nuclear orig full ' A' A ' 13' ' ' GLY . . . . . . . . . . . . . . . -45.26 -79.72 0.06 OUTLIER Glycine 0 CA--C 1.502 -0.775 0 CA-C-N 109.154 -3.657 . . . . 0.0 109.547 -178.097 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 14' ' ' ARG . . . . . 1.364 ' NH1' ' NE ' ' A' ' 14' ' ' ARG 0.508 0.0 OUTLIER . . . . . 0 C--N 1.279 -2.468 0 C-N-CA 113.052 -3.459 . . . . 0.0 109.505 175.019 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ARG . . . . . 1.374 ' NH1' ' NE ' ' A' ' 1' ' ' ARG 0.766 0.0 OUTLIER . . . . . 2 N--CA 1.199 -12.994 1 N-CA-C 99.475 -4.269 . . . . 0.0 99.475 . . . . . . . . . 5 3 . 1 . 001 nuclear build full ' A' A ' 2' ' ' GLY . . . . . . . . . . . . . . . 105.17 45.89 1.31 Allowed Glycine 3 CA--C 1.241 -17.069 3 CA-C-N 75.598 -18.91 . . . . 0.0 114.951 171.229 . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' LYS . . . . . 0.782 ' HG3' ' HG2' ' A' ' 12' ' ' GLU . 0.1 OUTLIER -162.48 135.31 5.8 Favored 'General case' 0 C--N 1.28 -2.448 2 O-C-N 139.315 9.48 . . . . 0.0 107.315 149.557 . . . . . . . . 4 4 . 1 . 001 nuclear build full ' A' A ' 4' ' ' TRP . . . . . 0.547 ' CE3' ' CB ' ' A' ' 11' ' ' TYR . 0.0 OUTLIER -130.85 136.63 48.83 Favored 'General case' 0 C--N 1.306 -1.311 0 CA-C-N 113.362 -1.745 . . . . 0.0 109.043 179.719 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 5' ' ' THR . . . . . 0.563 HG23 HG23 ' A' ' 10' ' ' THR . 0.0 OUTLIER -135.76 124.42 23.76 Favored 'General case' 0 C--N 1.299 -1.598 0 CA-C-N 114.416 -1.265 . . . . 0.0 107.726 -173.703 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . 0.34 0.1 OUTLIER -146.66 131.64 18.18 Favored 'General case' 0 C--N 1.313 -0.996 0 CA-C-N 112.96 -1.927 . . . . 0.0 110.633 -178.563 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ASN . . . . . . . . . . . . . 7.7 t30 65.43 15.79 10.2 Favored 'General case' 0 C--N 1.322 -0.591 0 O-C-N 126.914 2.634 . . . . 0.0 110.374 -178.301 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' GLY . . . . . . . . . . . . . . . 91.98 1.66 69.94 Favored Glycine 0 CA--C 1.523 0.546 0 CA-C-N 113.984 -1.462 . . . . 0.0 110.518 -179.758 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ILE . . . . . . . . . . . . . 1.4 mm -97.55 112.45 29.62 Favored 'Isoleucine or valine' 0 C--N 1.319 -0.732 0 N-CA-C 108.507 -0.923 . . . . 0.0 108.507 179.763 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 10' ' ' THR . . . . . 0.563 HG23 HG23 ' A' ' 5' ' ' THR . 30.2 m -81.23 136.64 35.84 Favored 'General case' 0 C--N 1.312 -1.035 0 CA-C-N 112.695 -2.048 . . . . 0.0 109.607 -179.325 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 11' ' ' TYR . . . . . 0.547 ' CB ' ' CE3' ' A' ' 4' ' ' TRP . 23.6 m-85 -138.95 106.9 5.68 Favored 'General case' 0 C--N 1.308 -1.199 0 CA-C-N 114.195 -1.366 . . . . 0.0 111.055 -178.711 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 12' ' ' GLU . . . . . 0.782 ' HG2' ' HG3' ' A' ' 3' ' ' LYS 0.415 4.7 mt-10 -97.82 83.89 3.25 Favored 'General case' 0 C--N 1.3 -1.579 0 CA-C-O 125.352 2.501 . . . . 0.0 112.369 178.119 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 13' ' ' GLY . . . . . . . . . . . . . . . -45.26 -79.72 0.06 OUTLIER Glycine 0 CA--C 1.502 -0.775 0 CA-C-N 109.154 -3.657 . . . . 0.0 109.547 -178.097 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 14' ' ' ARG . . . . . 1.364 ' NH1' ' NE ' ' A' ' 14' ' ' ARG 0.508 0.0 OUTLIER . . . . . 0 C--N 1.279 -2.468 0 C-N-CA 113.052 -3.459 . . . . 0.0 109.505 175.019 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ARG . . . . . 1.374 ' NH1' ' NE ' ' A' ' 1' ' ' ARG 0.766 0.0 OUTLIER . . . . . 2 N--CA 1.199 -12.994 1 N-CA-C 99.475 -4.269 . . . . 0.0 99.475 . . . . . . . . . 5 3 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' GLY . . . . . . . . . . . . . . . 105.17 45.89 1.31 Allowed Glycine 3 CA--C 1.241 -17.069 3 CA-C-N 75.598 -18.91 . . . . 0.0 114.951 171.229 . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' LYS . . . . . 0.782 ' HG3' ' HG2' ' A' ' 12' ' ' GLU . 0.1 OUTLIER -162.48 135.31 5.8 Favored 'General case' 0 C--N 1.28 -2.448 2 O-C-N 139.315 9.48 . . . . 0.0 107.315 149.557 . . . . . . . . 4 4 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' TRP . . . . . 0.547 ' CE3' ' CB ' ' A' ' 11' ' ' TYR . 0.0 OUTLIER -130.85 136.63 48.83 Favored 'General case' 0 C--N 1.306 -1.311 0 CA-C-N 113.362 -1.745 . . . . 0.0 109.043 179.719 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' THR . . . . . 0.563 HG23 HG23 ' A' ' 10' ' ' THR . 0.0 OUTLIER -135.76 124.42 23.76 Favored 'General case' 0 C--N 1.299 -1.598 0 CA-C-N 114.416 -1.265 . . . . 0.0 107.726 -173.703 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' TYR . . . . . . . . . . . . 0.34 0.1 OUTLIER -146.66 131.64 18.18 Favored 'General case' 0 C--N 1.313 -0.996 0 CA-C-N 112.96 -1.927 . . . . 0.0 110.633 -178.563 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ASN . . . . . . . . . . . . . 7.7 t30 65.43 15.79 10.2 Favored 'General case' 0 C--N 1.322 -0.591 0 O-C-N 126.914 2.634 . . . . 0.0 110.374 -178.301 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' GLY . . . . . . . . . . . . . . . 91.98 1.66 69.94 Favored Glycine 0 CA--C 1.523 0.546 0 CA-C-N 113.984 -1.462 . . . . 0.0 110.518 -179.758 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ILE . . . . . . . . . . . . . 1.4 mm -97.55 112.45 29.62 Favored 'Isoleucine or valine' 0 C--N 1.319 -0.732 0 N-CA-C 108.507 -0.923 . . . . 0.0 108.507 179.763 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' THR . . . . . 0.563 HG23 HG23 ' A' ' 5' ' ' THR . 30.2 m -81.23 136.64 35.84 Favored 'General case' 0 C--N 1.312 -1.035 0 CA-C-N 112.695 -2.048 . . . . 0.0 109.607 -179.325 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' TYR . . . . . 0.547 ' CB ' ' CE3' ' A' ' 4' ' ' TRP . 23.6 m-85 -138.95 106.9 5.68 Favored 'General case' 0 C--N 1.308 -1.199 0 CA-C-N 114.195 -1.366 . . . . 0.0 111.055 -178.711 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 12' ' ' GLU . . . . . 0.782 ' HG2' ' HG3' ' A' ' 3' ' ' LYS 0.415 4.7 mt-10 -97.82 83.89 3.25 Favored 'General case' 0 C--N 1.3 -1.579 0 CA-C-O 125.352 2.501 . . . . 0.0 112.369 178.119 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 13' ' ' GLY . . . . . . . . . . . . . . . -45.26 -79.72 0.06 OUTLIER Glycine 0 CA--C 1.502 -0.775 0 CA-C-N 109.154 -3.657 . . . . 0.0 109.547 -178.097 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 14' ' ' ARG . . . . . 1.364 ' NH1' ' NE ' ' A' ' 14' ' ' ARG 0.508 0.0 OUTLIER . . . . . 0 C--N 1.279 -2.468 0 C-N-CA 113.052 -3.459 . . . . 0.0 109.505 175.019 . . . . . . . . 3 3 . 1 stop_ save_