data_3dgj_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 3dgj _Structure_validation_residue.Date_analyzed 2016-10-12 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' A' A ' 2' ' ' ASN . . . . . . . . . . . . . 85.7 m-20 . . . . . 0 N--CA 1.495 1.808 0 N-CA-C 112.632 0.604 . . . . 6.4000000000000004 112.632 . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 3' ' ' ASN . . . . . . . . . . . . . 30.8 t30 -104.38 122.41 45.42 Favored 'General case' 0 N--CA 1.463 0.181 0 CA-C-N 115.735 -0.666 . . . . 6.1600000000000001 110.223 176.638 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 4' ' ' PHE . . . . . . . . . . . . . 97.4 m-85 -115.74 13.57 16.2 Favored 'General case' 0 CA--C 1.544 0.734 0 C-N-CA 123.905 0.882 . . . . 4.8600000000000003 111.638 176.712 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 5' ' ' GLY . . . . . . . . . . . . . . . -137.6 -157.81 7.67 Favored Glycine 0 N--CA 1.465 0.587 0 O-C-N 122.398 -0.189 . . . . 3.2000000000000002 112.901 178.465 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 6' ' ' ALA . . . . . . . . . . . . . . . -100.87 128.5 46.88 Favored 'General case' 0 C--O 1.224 -0.266 0 C-N-CA 122.771 0.428 . . . . 4.8499999999999996 110.814 179.633 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 7' ' ' ILE . . . . . . . . . . . . . 73.0 mt -110.0 98.36 6.93 Favored 'Isoleucine or valine' 0 C--N 1.328 -0.354 0 N-CA-C 104.268 -2.493 . . . . 8.5700000000000003 104.268 171.649 . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' A' A ' 8' ' ' LEU . . . . . . . . . . . . . 54.4 mt . . . . . 0 C--O 1.238 0.494 0 CA-C-N 115.812 -0.631 . . . . 11.07 112.302 -172.05 . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' A' A ' 1' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 2' ' ' ASN . . . . . . . . . . . . . 85.7 m-20 . . . . . 0 N--CA 1.495 1.808 0 N-CA-C 112.632 0.604 . . . . 6.4000000000000004 112.632 . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 3' ' ' ASN . . . . . . . . . . . . . 30.8 t30 -104.38 122.41 45.42 Favored 'General case' 0 N--CA 1.463 0.181 0 CA-C-N 115.735 -0.666 . . . . 6.1600000000000001 110.223 176.638 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 4' ' ' PHE . . . . . . . . . . . . . 97.4 m-85 -115.74 13.57 16.2 Favored 'General case' 0 CA--C 1.544 0.734 0 C-N-CA 123.905 0.882 . . . . 4.8600000000000003 111.638 176.712 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 5' ' ' GLY . . . . . . . . . . . . . . . -137.6 -157.81 7.67 Favored Glycine 0 N--CA 1.465 0.587 0 O-C-N 122.398 -0.189 . . . . 3.2000000000000002 112.901 178.465 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 6' ' ' ALA . . . . . . . . . . . . . . . -100.87 128.5 46.88 Favored 'General case' 0 C--O 1.224 -0.266 0 C-N-CA 122.771 0.428 . . . . 4.8499999999999996 110.814 179.633 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 7' ' ' ILE . . . . . . . . . . . . . 73.0 mt -110.0 98.36 6.93 Favored 'Isoleucine or valine' 0 C--N 1.328 -0.354 0 N-CA-C 104.268 -2.493 . . . . 8.5700000000000003 104.268 171.649 . . . . . . . . 1 1 . 1 . 001 ecloud build full ' A' A ' 8' ' ' LEU . . . . . . . . . . . . . 54.4 mt . . . . . 0 C--O 1.238 0.494 0 CA-C-N 115.812 -0.631 . . . . 11.07 112.302 -172.05 . . . . . . . . 0 0 . 1 . 001 ecloud build full ' A' A ' 1' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 2' ' ' ASN . . . . . . . . . . . . . 85.7 m-20 . . . . . 0 N--CA 1.495 1.808 0 N-CA-C 112.632 0.604 . . . . 6.4000000000000004 112.632 . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 3' ' ' ASN . . . . . . . . . . . . . 30.8 t30 -104.38 122.41 45.42 Favored 'General case' 0 N--CA 1.463 0.181 0 CA-C-N 115.735 -0.666 . . . . 6.1600000000000001 110.223 176.638 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 4' ' ' PHE . . . . . . . . . . . . . 97.4 m-85 -115.74 13.57 16.2 Favored 'General case' 0 CA--C 1.544 0.734 0 C-N-CA 123.905 0.882 . . . . 4.8600000000000003 111.638 176.712 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 5' ' ' GLY . . . . . . . . . . . . . . . -137.6 -157.81 7.67 Favored Glycine 0 N--CA 1.465 0.587 0 O-C-N 122.398 -0.189 . . . . 3.2000000000000002 112.901 178.465 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 6' ' ' ALA . . . . . . . . . . . . . . . -100.87 128.5 46.88 Favored 'General case' 0 C--O 1.224 -0.266 0 C-N-CA 122.771 0.428 . . . . 4.8499999999999996 110.814 179.633 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 7' ' ' ILE . . . . . . . . . . . . . 73.0 mt -110.0 98.36 6.93 Favored 'Isoleucine or valine' 0 C--N 1.328 -0.354 0 N-CA-C 104.268 -2.493 . . . . 8.5700000000000003 104.268 171.649 . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' A' A ' 8' ' ' LEU . . . . . . . . . . . . . 54.4 mt . . . . . 0 C--O 1.238 0.494 0 CA-C-N 115.812 -0.631 . . . . 11.07 112.302 -172.05 . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' A' A ' 1' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_