data_1a9g_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1a9g _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . 0.48 " O5'" " H2'" ' A' ' 1' ' ' ' DC' . . . . . . . . 8 C5'--C4' 1.28 -28.89 3 O4'-C1'-N19 114.648 8.56 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 P--O3' 1.406 -16.726 1 P-O3'-C3' 125.605 4.92 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DC' . . . . . 0.406 H2'' " O5'" ' A' ' 4' ' ' ' DG' . . . . . . . . 10 C5'--C4' 1.37 -17.617 2 P-O3'-C3' 127.743 6.702 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . 0.406 " O5'" H2'' ' A' ' 3' ' ' ' DC' . . . . . . . . 0 C4'--C3' 1.495 -3.331 2 C4'-C3'-C2' 98.44 -4.76 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DA' . . . . . 0.637 ' C6 ' ' N4 ' ' B' ' 17' ' ' ' DC' . . . . . . . . 3 P--O5' 1.527 -6.594 2 P-O3'-C3' 126.518 5.682 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' AAB . . . . . 0.69 HO1' ' H1 ' ' B' ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DA' . . . . . 0.417 " O5'" " H2'" ' A' ' 7' ' ' ' DA' . . . . . . . . 5 P--O5' 1.513 -8.026 3 C4'-C3'-C2' 97.793 -5.407 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DC' . . . . . 0.446 ' C4 ' ' N7 ' ' A' ' 9' ' ' ' DG' . . . . . . . . 6 P--OP2 1.378 -6.271 4 O4'-C1'-N19 114.225 8.031 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DG' . . . . . 0.446 ' N7 ' ' C4 ' ' A' ' 8' ' ' ' DC' . . . . . . . . 3 P--OP1 1.41 -4.423 3 O4'-C1'-N19 114.262 8.077 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 8 P--O5' 1.527 -6.583 1 P-O3'-C3' 128.948 7.707 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 6 C3'--C2' 1.455 -6.307 2 P-O3'-C3' 126.952 6.044 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 8 C5'--C4' 1.386 -15.683 3 O4'-C1'-N19 112.582 5.978 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 5 P--OP2 1.355 -7.657 3 O4'-C1'-N19 113.917 7.647 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 9 P--OP2 1.357 -7.505 1 P-O3'-C3' 126.215 5.429 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 15' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 3 P--OP1 1.403 -4.838 1 P-O3'-C3' 127.187 6.239 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 16' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 6 P--O5' 1.481 -11.187 1 P-O3'-C3' 127.51 6.508 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' ' DC' . . . . . 0.637 ' N4 ' ' C6 ' ' A' ' 5' ' ' ' DA' . . . . . . . . 1 C3'--C2' 1.46 -5.843 1 P-O3'-C3' 126.596 5.747 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.511 -8.239 1 P-O3'-C3' 126.622 5.768 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 5 P--O5' 1.489 -10.409 1 P-O3'-C3' 130.015 8.596 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 C3'--C2' 1.432 -8.579 1 P-O3'-C3' 128.797 7.581 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 21' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 11 O3'--C3' 1.319 -8.651 1 P-O3'-C3' 129.987 8.572 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 22' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 10 O3'--C3' 1.119 -23.991 5 C3'-C2'-C1' 120.529 12.735 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 23' ' ' HOH . . . . . 0.69 ' H1 ' HO1' ' A' ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . 0.4 " O5'" " H2'" ' A' ' 1' ' ' ' DC' . . . . . . . . 8 C5'--C4' 1.28 -28.89 3 O4'-C1'-N19 114.648 8.56 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 P--O3' 1.406 -16.726 1 P-O3'-C3' 125.605 4.92 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 10 C5'--C4' 1.37 -17.617 2 P-O3'-C3' 127.743 6.702 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C4'--C3' 1.495 -3.331 2 C4'-C3'-C2' 98.44 -4.76 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DA' . . . . . 0.637 ' C6 ' ' N4 ' ' B' ' 17' ' ' ' DC' . . . . . . . . 3 P--O5' 1.527 -6.594 2 P-O3'-C3' 126.518 5.682 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 6' ' ' AAB . . . . . 0.409 " O5'" H2'1 ' A' ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 5 P--O5' 1.513 -8.026 3 C4'-C3'-C2' 97.793 -5.407 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DC' . . . . . 0.446 ' C4 ' ' N7 ' ' A' ' 9' ' ' ' DG' . . . . . . . . 6 P--OP2 1.378 -6.271 4 O4'-C1'-N19 114.225 8.031 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DG' . . . . . 0.446 ' N7 ' ' C4 ' ' A' ' 8' ' ' ' DC' . . . . . . . . 3 P--OP1 1.41 -4.423 3 O4'-C1'-N19 114.262 8.077 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 8 P--O5' 1.527 -6.583 1 P-O3'-C3' 128.948 7.707 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 6 C3'--C2' 1.455 -6.307 2 P-O3'-C3' 126.952 6.044 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 8 C5'--C4' 1.386 -15.683 3 O4'-C1'-N19 112.582 5.978 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 13' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 5 P--OP2 1.355 -7.657 3 O4'-C1'-N19 113.917 7.647 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 9 P--OP2 1.357 -7.505 1 P-O3'-C3' 126.215 5.429 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 15' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 3 P--OP1 1.403 -4.838 1 P-O3'-C3' 127.187 6.239 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 16' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 6 P--O5' 1.481 -11.187 1 P-O3'-C3' 127.51 6.508 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 17' ' ' ' DC' . . . . . 0.637 ' N4 ' ' C6 ' ' A' ' 5' ' ' ' DA' . . . . . . . . 1 C3'--C2' 1.46 -5.843 1 P-O3'-C3' 126.596 5.747 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.511 -8.239 1 P-O3'-C3' 126.622 5.768 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 5 P--O5' 1.489 -10.409 1 P-O3'-C3' 130.015 8.596 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 C3'--C2' 1.432 -8.579 1 P-O3'-C3' 128.797 7.581 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 21' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 11 O3'--C3' 1.319 -8.651 1 P-O3'-C3' 129.987 8.572 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 22' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 10 O3'--C3' 1.119 -23.991 5 C3'-C2'-C1' 120.529 12.735 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . 0.4 " O5'" " H2'" ' A' ' 1' ' ' ' DC' . . . . . . . . 8 C5'--C4' 1.28 -28.89 3 O4'-C1'-N19 114.648 8.56 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 P--O3' 1.406 -16.726 1 P-O3'-C3' 125.605 4.92 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 10 C5'--C4' 1.37 -17.617 2 P-O3'-C3' 127.743 6.702 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C4'--C3' 1.495 -3.331 2 C4'-C3'-C2' 98.44 -4.76 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DA' . . . . . 0.637 ' C6 ' ' N4 ' ' B' ' 17' ' ' ' DC' . . . . . . . . 3 P--O5' 1.527 -6.594 2 P-O3'-C3' 126.518 5.682 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' AAB . . . . . 0.409 " O5'" H2'1 ' A' ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DA' . . . . . . . . . . . . . . . . . . . . 5 P--O5' 1.513 -8.026 3 C4'-C3'-C2' 97.793 -5.407 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DC' . . . . . 0.446 ' C4 ' ' N7 ' ' A' ' 9' ' ' ' DG' . . . . . . . . 6 P--OP2 1.378 -6.271 4 O4'-C1'-N19 114.225 8.031 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DG' . . . . . 0.446 ' N7 ' ' C4 ' ' A' ' 8' ' ' ' DC' . . . . . . . . 3 P--OP1 1.41 -4.423 3 O4'-C1'-N19 114.262 8.077 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 8 P--O5' 1.527 -6.583 1 P-O3'-C3' 128.948 7.707 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 6 C3'--C2' 1.455 -6.307 2 P-O3'-C3' 126.952 6.044 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 8 C5'--C4' 1.386 -15.683 3 O4'-C1'-N19 112.582 5.978 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 5 P--OP2 1.355 -7.657 3 O4'-C1'-N19 113.917 7.647 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 14' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 9 P--OP2 1.357 -7.505 1 P-O3'-C3' 126.215 5.429 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 15' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 3 P--OP1 1.403 -4.838 1 P-O3'-C3' 127.187 6.239 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 16' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 6 P--O5' 1.481 -11.187 1 P-O3'-C3' 127.51 6.508 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' ' DC' . . . . . 0.637 ' N4 ' ' C6 ' ' A' ' 5' ' ' ' DA' . . . . . . . . 1 C3'--C2' 1.46 -5.843 1 P-O3'-C3' 126.596 5.747 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.511 -8.239 1 P-O3'-C3' 126.622 5.768 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 5 P--O5' 1.489 -10.409 1 P-O3'-C3' 130.015 8.596 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 4 C3'--C2' 1.432 -8.579 1 P-O3'-C3' 128.797 7.581 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 21' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 11 O3'--C3' 1.319 -8.651 1 P-O3'-C3' 129.987 8.572 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 22' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 10 O3'--C3' 1.119 -23.991 5 C3'-C2'-C1' 120.529 12.735 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_