CLEAN - Clean-up program
------------------------
 


 Clean-up program CLEAN - Written by David Keith Smith, 1989.
                          Amended by Roman Laskowski, 1992.


 Enter filename containing coordinates of structure
   (for file containing ensemble of NMR structures enter @filename;
    for set of separate PDB files to be processed, enter %filelist,
    where filelist contains a list of PDB files to be cleaned up)
 ** Unrecognized atom type [HG11] in residue ILE    26 
 ** Unrecognized atom type [HG12] in residue ILE    26 
 ** Unrecognized atom type [HG21] in residue ILE    26 
 ** Unrecognized atom type [HG22] in residue ILE    26 
 ** Unrecognized atom type [HG23] in residue ILE    26 
 ** Unrecognized atom type [HG21] in residue THR    29 
 ** Unrecognized atom type [HG22] in residue THR    29 
 ** Unrecognized atom type [HG23] in residue THR    29 
 ** Unrecognized atom type [HG21] in residue THR    33 
 ** Unrecognized atom type [HG22] in residue THR    33 
 ** Unrecognized atom type [HG23] in residue THR    33 
 ** Unrecognized atom type [HE21] in residue GLN    46 
 ** Unrecognized atom type [HE22] in residue GLN    46 
 ** Unrecognized atom type [HG11] in residue VAL    49 
 ** Unrecognized atom type [HG12] in residue VAL    49 
 ** Unrecognized atom type [HG13] in residue VAL    49 
 ** Unrecognized atom type [HG21] in residue VAL    49 
 ** Unrecognized atom type [HG22] in residue VAL    49 
 ** Unrecognized atom type [HG23] in residue VAL    49 
 ** Unrecognized atom type [HE21] in residue GLN    54 
 ** Unrecognized atom type [HE22] in residue GLN    54 
 ** Unrecognized atom type [HG11] in residue VAL    67 
 ** Unrecognized atom type [HG12] in residue VAL    67 
 ** Unrecognized atom type [HG13] in residue VAL    67 
 ** Unrecognized atom type [HG21] in residue VAL    67 
 ** Unrecognized atom type [HG22] in residue VAL    67 
 ** Unrecognized atom type [HG23] in residue VAL    67 
 ** Unrecognized atom type [ OT1] in residue VAL    67 
 ** Unrecognized atom type [ OT2] in residue VAL    67 
 "ZIN": unknown amino acid code
 Average value of CA-N-C-CB angle is  33.99
 Standard deviation is                 1.90
 * Side chain atoms swapped for residues:
 * ASP     1  ASP     7  ASP     9  TYR    24  PHE    35  GLU    56  TYR    66     
 WARNING: Number of atoms/hetatms in new file differs from old file - 
           new number =  1013
           old number =     0
 Total number of residues changed and total number of residues:
     ALA     0     6
     CYS     0     2
     ASP     3     5
     GLU     1     5
     PHE     1     3
     GLY     0     5
     HIS     0     3
     ILE     0     1
     LYS     0     5
     LEU     0     6
     MET     0     1
     ASN     0     2
     PRO     0     4
     GLN     0     2
     ARG     0     5
     SER     0     5
     THR     0     2
     VAL     0     2
     TYR     2     3
 * Program completed