Residue-by-residue listing for refined_14 Page 1 ---------------------------------------- This listing highlights the residues in the structure which may need investigation. The ideal values and standard deviations against which the structure has been compared are shown in the following table: <------------------------------- I D E A L V A L U E S -------------------------------> Chi-1 dihedral Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality g(-) trans g(+) Chi-2 phi helix psi rt-hand lf-hand bond dihedral en. C-alpha ------------------------------------------------------------------------------------------ Ideal value 64.1 183.6 -66.7 177.4 -65.4 -65.3 -39.4 96.8 -85.8 2.0 180.0 -2.0 33.9 Standard deviation 15.7 16.8 15.0 18.5 11.2 11.9 11.3 14.8 10.7 .1 5.8 .8 3.5 ------------------------------------------------------------------------------------------ In the listing below, properties that deviate from these values are highlighted by asterisks and plus-signs. Each asterisk represents one standard deviation, and each plus-sign represents half a standard deviation. So, a highlight such as +***, indicates that the value of the parameter is between 3.5 and 4.0 standard deviations from the ideal value shown above. Where the deviation is greater than 4.5 standard deviations its numerical value is shown; for example, *5.5*. The final column gives the maximum deviation in each row, while the maximum column deviations are shown at the end of the listing. Also at the end are the keys to the codes used for the secondary structure and Ramachandran plot assignments. Full print-out. ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - - 181.4 - 180.6 - - - - - - 184.6 - 34.2 - 2 THR 2 B - 182.2 - - - - - - - - 172.8 - 31.7 - * * 3 GLU 3 e b - - -70.5 175.6 - - - - - - 181.1 -.6 31.6 - +* +* 4 VAL 4 E B - - -63.0 - - - - - - - 177.1 - 33.4 - 5 TYR 5 E B 56.4 - - - - - - - - - 168.0 -3.0 33.9 - ** * ** 6 ASP 6 E B - - -69.4 - - - - - - - 182.1 - 33.9 - 7 LEU 7 E B - - -68.7 177.8 - - - - - - 170.7 -1.9 35.6 - +* +* 8 GLU 8 E B - 179.9 - 179.1 - - - - - - 185.0 -1.9 34.2 - 9 ILE 9 E B - - -54.9 - - - - - - - 173.8 -3.4 35.9 - * +* +* 10 THR 10 E B - - -34.7 - - - - - - - 186.8 -2.9 34.8 - ** * * ** 11 THR 11 E B - - -41.7 - - - - - - - 178.5 - 36.7 - +* +* 12 ASN 12 e A 62.5 - - - - - - - - - 179.4 -.9 33.8 - * * 13 ALA 13 S A - - - - - - - - - - 178.0 - 33.7 - 14 THR 14 B 56.7 - - - - - - - - - 179.0 - 35.0 - 15 ASP 15 S A - - -58.7 - - - - - - - 182.9 - 34.6 - 16 PHE 16 S B - - -61.9 - - - - - - - 177.1 - 34.2 - 17 PRO 17 - - - - - -61.1 - - - - - 181.7 - 38.6 - * * 18 MET 18 E B - - -60.4 175.4 - - - - - - 181.0 -2.9 35.2 - * * Residue-by-residue listing for refined_14 Page 2 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 19 GLU 19 E B - - -59.2 176.0 - - - - - - 182.9 - 34.3 - 20 LYS 20 E B - 203.7 - 169.9 - - - - - - 184.6 -1.5 35.2 - * * 21 LYS 21 E B - 179.1 - 178.6 - - - - - - 177.9 - 34.5 - 22 TYR 22 E B - - -68.8 - - - - - - - 178.4 -1.8 34.2 - 23 PRO 23 E - - - - - -74.8 - - - - - 178.2 - 39.4 - +* +* 24 ALA 24 e A - - - - - - - - - - 177.1 -2.3 32.6 - 25 GLY 25 T - - - - - - - - - - - 178.5 -.6 - - +* +* 26 MET 26 t B - 177.6 - 180.6 - - - - - - 179.4 -1.0 36.6 - * * 27 SER 27 h B 55.5 - - - - - - - - - 176.4 - 35.0 - 28 LEU 28 H A - 188.7 - - - -61.6 -35.1 - - - 182.3 -.8 35.2 - +* +* 29 ASN 29 H A - - -67.8 - - -67.1 -34.3 - - - 178.6 - 31.5 - 30 ASP 30 H A - 194.7 - - - -74.8 -33.3 - - - 177.3 - 34.5 - 31 LEU 31 H A - 182.1 - - - -64.0 -42.6 - - - 175.0 -1.8 35.0 - 32 LYS 32 H A - - -58.5 184.8 - -56.2 -49.4 - - - 179.1 -2.5 33.8 - 33 LYS 33 H A - - -77.3 188.2 - -58.3 -37.2 - - - 175.9 -2.0 34.7 - 34 LYS 34 H A - - -67.8 - - -68.5 -41.0 - - - 176.5 -2.1 35.7 - 35 LEU 35 H A - - -65.6 181.2 - -67.1 -40.9 - - - 177.8 -2.8 35.0 - * * 36 GLU 36 H A - - -69.7 - - -60.9 -30.6 - - - 175.6 -3.6 33.0 - ** ** 37 LEU 37 H A - 182.7 - - - -67.8 -25.4 - - - 177.8 -1.1 34.9 - * * * 38 VAL 38 H A - 180.2 - - - -90.2 -41.9 - - - 183.6 -1.3 35.0 - ** ** 39 VAL 39 H A - 187.9 - - - -81.9 -27.6 - - - 178.7 -3.0 32.6 - * * * * 40 GLY 40 h - - - - - - - - - - - 180.8 -2.6 - - 41 THR 41 B - - -45.2 - - - - - - - 174.2 - 35.6 - * * * 42 THR 42 g B - - -43.1 - - - - - - - 196.1 - 33.8 - +* +** +** 43 VAL 43 G A - 182.3 - - - - - - - - 182.9 - 33.0 - 44 ASP 44 G A - - -67.0 - - - - - - - 181.4 - 34.1 - 45 SER 45 e A - - -56.1 - - - - - - - 181.9 -1.8 36.5 - 46 MET 46 E B - 177.8 - - - - - - - - 180.1 -1.1 34.0 - * * 47 ARG 47 E B - 182.4 - 181.7 - - - - - - 186.7 -3.0 35.5 - * * * 48 ILE 48 E B - - -56.6 - - - - - - - 174.9 - 35.7 - 49 GLN 49 E B - - -71.2 - - - - - - - 179.2 -3.5 32.9 - +* +* 50 LEU 50 E B - 187.6 - 172.0 - - - - - - 176.4 -2.3 33.6 - 51 PHE 51 E B - - -66.5 - - - - - - - 181.4 -3.0 33.4 - * * 52 ASP 52 e B - 180.2 - - - - - - - - 180.8 -1.8 33.8 - 53 GLY 53 S - - - - - - - - - - - 176.4 - - - 54 ASP 54 S a - 176.5 - - - - - - - - 180.3 - 34.3 - 55 ASP 55 S ~b - 194.1 - - - - - - - - 181.2 - 34.8 - ** ** 56 GLN 56 e XX - - -53.1 174.7 - - - - - - 178.3 - 32.4 - **** **** 57 LEU 57 E B - 182.1 - - - - - - - - 179.4 - 35.0 - Residue-by-residue listing for refined_14 Page 3 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 58 LYS 58 E A - - -59.8 - - - - - - - 177.8 -2.5 35.1 - 59 GLY 59 E - - - - - - - - - - - 178.7 -1.1 - - * * 60 GLU 60 E B - 183.6 - 172.1 - - - - - - 185.4 - 33.1 - 61 LEU 61 e b - - -59.0 179.0 - - - - - - 183.5 -1.8 35.0 - 62 THR 62 ~l - 202.0 - - - - - - - - 179.0 - 28.1 - ** * +* ** 63 ASP 63 a - - -50.9 - - - - - - - 177.1 - 36.6 - * * 64 GLY 64 - - - - - - - - - - - 176.9 - - - 65 ALA 65 S A - - - - - - - - - - 179.9 - 33.8 - 66 LYS 66 S b 53.2 - - 176.2 - - - - - - 181.5 - 35.4 - 67 SER 67 B B 56.2 - - - - - - - - - 177.3 - 33.9 - 68 LEU 68 T A - - -72.4 164.9 - - - - - - 176.9 -2.5 33.2 - 69 LYS 69 T A - 174.7 - 174.5 - - - - - - 180.8 -2.4 33.8 - 70 ASP 70 T A - 190.6 - - - - - - - - 177.8 - 34.5 - 71 LEU 71 T A - - -68.7 176.3 - - - - - - 178.9 -1.5 33.8 - 72 GLY 72 T - - - - - - - - - - - 179.4 -1.2 - - * * 73 VAL 73 t b - 181.9 - - - - - - - - 178.4 -3.1 33.1 - * * 74 ARG 74 t b - - -64.4 179.2 - - - - - - 180.7 -1.5 34.4 - 75 ASP 75 T B 61.4 - - - - - - - - - 178.9 - 33.6 - 76 GLY 76 T - - - - - - - - - - - 178.3 -2.8 - - * * 77 TYR 77 e B - - -71.0 - - - - - - - 182.6 -1.1 32.2 - * * 78 ARG 78 E B - 200.5 - 183.2 - - - - - - 182.3 -2.8 35.8 - * * 79 ILE 79 E B - - -61.9 - - - - - - - 179.6 -2.0 32.8 - 80 HIS 80 E B - 174.1 - - - - - - - - 175.9 -3.1 34.0 - * * 81 ALA 81 E B - - - - - - - - - - 178.8 -3.0 34.7 - * * 82 VAL 82 E B 62.9 - - - - - - - - - 178.2 -2.9 32.8 - * * 83 ASP 83 E B - 172.1 - - - - - - - - 182.6 - 34.0 - 84 VAL 84 e A - 183.0 - - - - - - - - 186.7 -2.9 34.7 - * * * 85 THR 85 S A - 191.7 - - - - - - - - 175.5 -.7 32.2 - +* +* 86 GLY 86 S - - - - - - - - - - - 177.8 - - - 87 GLY 87 - - - - - - - - - - - 177.5 - - - 88 ASN 88 B - - -71.5 - - - - - - - 177.0 - 32.9 - 89 GLU 89 A 47.4 - - - - - - - - - 178.0 -.5 31.8 - * ** ** 90 ASP 90 - - 180.5 - - - - - - - - - - 34.3 - ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: **** * * ** ** * +** ** +* **** ----------------------------------------------------------------------------------------------------------------------------------- Mean values: 56.9 184.4 -61.6 177.5 -67.9 -68.2 -36.6 - - - 179.4 -2.1 34.2 Standard deviations: 4.9 8.0 9.7 5.1 9.7 9.9 6.9 - - - 3.8 .9 1.6 Numbers of values: 9 31 35 23 2 12 12 0 0 0 89 50 81 0 Residue-by-residue listing for refined_14 Page 4 ---------------------------------------- KEY TO CODES: ------------ Regions of the Ramachandran plot Secondary structure (extended Kabsch/Sander) -------------------------------- -------------------------------------------- A - Core alpha B - residue in isolated beta-bridge a - Allowed alpha E - extended strand, participates in beta-ladder ~a - Generous alpha ** Generous G - 3-helix (3/10 helix) B - Core beta H - 4-helix (alpha-helix) b - Allowed beta I - 5-helix (pi-helix) ~b - Generous beta ** Generous S - bend L - Core left-handed alpha T - hydrogen-bonded turn l - Allowed left-handed alpha ~l - Generous left-handed alpha ** Generous e - extension of beta-strand p - Allowed epsilon g - extension of 3/10 helix ~p - Generous epsilon ** Generous h - extension of alpha-helix XX - Outside major areas **** Disallowed Residue-by-residue listing for refined_14 Page 5 ---------------------------------------- M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S ..................................... Small molecule data ......................................... <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N --------------------------------------------------------------------------------------------------- Any - 1.231 - - - - - - - - - - ( .020) Pro 1.341 - - - 1.466 122.60 116.90 - - 111.80 103.00 122.00 ( .016) ( .015) ( 5.00) ( 1.50) ( 2.50) ( 1.10) ( 1.40) Except Pro 1.329 - - - - - - - - - - 123.00 ( .014) ( 1.60) Gly - - 1.516 - 1.451 120.60 116.40 120.80 - 112.50 - - ( .018) ( .016) ( 1.70) ( 2.10) ( 2.10) ( 2.90) Except Gly - - 1.525 - - - - 120.80 - - - - ( .021) ( 1.70) Ala - - - 1.521 - - - - 110.50 - 110.40 - ( .033) ( 1.50) ( 1.50) Ile,Thr,Val - - - 1.540 - - - - 109.10 - 111.50 - ( .027) ( 2.20) ( 1.70) Except Gly,Pro - - - - 1.458 121.70 116.20 - - 111.20 - - ( .019) ( 1.80) ( 2.00) ( 2.80) The rest - - - 1.530 - - - - 110.10 - 110.50 - ( .020) ( 1.90) ( 1.70) Note. The table above shows the mean values obtained from small molecule data by Engh & Huber (1991). The values shown in brackets are standard deviations ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - 1.237 1.516 1.539 1.466 - 115.99 121.17 111.40 108.31 110.09 122.67 * * 2 THR 2 1.308 1.239 1.532 1.558 1.422 121.05 115.43 121.58 111.60 113.21 112.04 122.96 +* +* * +* 3 GLU 3 1.306 1.222 1.485 1.517 1.439 122.82 114.46 121.92 111.43 109.48 113.51 123.48 +* +* +* +* 4 VAL 4 1.282 1.245 1.504 1.566 1.441 122.67 115.31 121.05 109.54 110.18 113.02 123.55 *** * *** 5 TYR 5 1.287 1.227 1.526 1.548 1.440 121.62 116.53 120.65 110.51 111.89 110.45 122.75 +** +** 6 ASP 6 1.305 1.243 1.489 1.526 1.451 121.44 115.70 120.89 108.17 106.93 114.26 123.39 +* +* * +* ** ** 7 LEU 7 1.270 1.234 1.481 1.520 1.426 122.23 114.89 121.06 107.61 111.03 111.25 124.05 **** ** +* * **** 8 GLU 8 1.292 1.231 1.498 1.519 1.411 121.51 115.15 121.44 111.11 105.46 111.37 123.34 +** * ** ** +** 9 ILE 9 1.276 1.227 1.500 1.562 1.429 122.37 116.31 120.65 108.34 109.19 110.99 123.01 +*** * +* +*** 10 THR 10 1.286 1.229 1.523 1.525 1.419 121.55 116.66 120.40 109.27 105.91 112.05 122.93 *** ** +* *** 11 THR 11 1.273 1.234 1.501 1.555 1.436 123.20 116.82 120.05 107.14 105.82 111.56 123.11 **** * * +* **** Residue-by-residue listing for refined_14 Page 6 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 12 ASN 12 1.277 1.219 1.516 1.530 1.429 121.77 115.48 121.42 110.86 109.43 111.00 123.08 +*** +* +*** 13 ALA 13 1.315 1.227 1.532 1.516 1.435 122.22 116.32 121.01 111.34 111.43 109.77 122.66 * * * 14 THR 14 1.317 1.236 1.513 1.543 1.446 121.88 117.11 120.01 108.81 108.85 111.48 122.88 15 ASP 15 1.297 1.233 1.498 1.535 1.453 121.01 114.94 121.60 108.98 109.07 111.83 123.43 ** * ** 16 PHE 16 1.304 1.235 1.519 1.538 1.433 122.08 117.33 120.32 110.36 110.79 110.62 122.32 +* * +* 17 PRO 17 1.345 1.243 1.536 1.533 1.464 122.81 115.91 121.17 110.26 111.96 103.62 122.91 18 MET 18 1.305 1.222 1.514 1.538 1.447 122.86 117.12 120.27 110.01 109.19 109.89 122.60 +* +* 19 GLU 19 1.300 1.239 1.509 1.517 1.453 121.25 116.57 120.43 110.41 109.79 110.27 123.00 ** ** 20 LYS 20 1.310 1.240 1.527 1.523 1.437 121.37 117.00 119.96 112.33 108.24 107.62 123.00 * * * * +* +* 21 LYS 21 1.317 1.222 1.523 1.539 1.465 122.01 116.20 120.63 109.84 112.14 110.04 123.17 22 TYR 22 1.316 1.240 1.532 1.539 1.460 123.14 118.53 119.83 109.38 109.42 111.67 121.64 * * 23 PRO 23 1.354 1.222 1.534 1.537 1.465 122.53 116.60 120.84 109.03 112.55 103.66 122.55 24 ALA 24 1.321 1.236 1.539 1.522 1.473 122.10 116.26 121.17 111.32 112.00 110.87 122.57 25 GLY 25 1.311 1.235 1.510 - 1.459 121.26 114.60 121.21 - 111.33 - 124.18 * * 26 MET 26 1.307 1.237 1.539 1.525 1.453 124.82 116.76 120.53 111.24 110.29 105.95 122.70 +* +* +** +** 27 SER 27 1.313 1.241 1.501 1.524 1.446 122.01 115.61 121.03 109.38 110.69 110.30 123.36 * * * 28 LEU 28 1.322 1.220 1.517 1.539 1.452 121.82 115.47 121.14 111.46 108.95 108.41 123.34 * * 29 ASN 29 1.310 1.236 1.517 1.530 1.471 121.31 116.73 120.62 111.32 112.48 112.37 122.63 * * * 30 ASP 30 1.321 1.217 1.501 1.517 1.462 120.91 115.46 120.94 110.21 108.67 110.57 123.57 * * 31 LEU 31 1.327 1.213 1.490 1.524 1.464 122.40 115.66 120.46 109.77 108.31 110.51 123.87 +* * +* 32 LYS 32 1.324 1.165 1.496 1.523 1.457 121.49 117.42 119.49 108.74 109.41 112.88 123.03 *** * * *** 33 LYS 33 1.324 1.233 1.534 1.500 1.427 122.92 116.33 120.72 111.68 112.33 107.61 122.94 +* +* +* +* 34 LYS 34 1.316 1.231 1.545 1.519 1.406 123.53 115.95 121.04 111.79 110.19 107.00 123.00 +** * ** +** 35 LEU 35 1.318 1.216 1.517 1.533 1.453 123.84 115.42 121.01 110.82 110.29 108.92 123.53 * * 36 GLU 36 1.301 1.216 1.502 1.516 1.429 124.96 116.26 120.81 112.63 112.16 109.35 122.93 ** * +* +* * ** 37 LEU 37 1.304 1.225 1.542 1.521 1.452 121.79 115.84 121.40 110.20 109.98 109.51 122.75 +* +* 38 VAL 38 1.313 1.237 1.539 1.559 1.457 122.43 116.17 121.09 108.84 110.59 110.92 122.74 * * 39 VAL 39 1.325 1.234 1.538 1.561 1.467 121.56 116.86 120.74 111.02 112.47 111.49 122.40 40 GLY 40 1.316 1.242 1.516 - 1.456 120.97 116.21 120.91 - 112.73 - 122.87 41 THR 41 1.306 1.261 1.565 1.558 1.453 121.99 117.19 120.47 110.74 109.54 108.41 122.27 +* +* +* +* +* 42 THR 42 1.328 1.238 1.551 1.528 1.431 121.68 116.00 120.64 110.62 107.73 111.52 123.12 * * * * Residue-by-residue listing for refined_14 Page 7 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 43 VAL 43 1.306 1.239 1.543 1.554 1.480 123.92 118.24 119.90 110.08 115.51 110.61 121.85 +* * * * +* +* 44 ASP 44 1.312 1.234 1.520 1.512 1.436 121.40 116.24 120.77 110.41 111.97 109.91 122.98 * * * 45 SER 45 1.313 1.235 1.531 1.496 1.421 123.18 115.57 121.16 110.03 111.17 106.98 123.27 * +* +* ** ** 46 MET 46 1.298 1.240 1.521 1.530 1.445 122.45 115.76 120.90 110.83 111.30 110.11 123.34 ** ** 47 ARG 47 1.305 1.224 1.534 1.525 1.449 123.32 117.77 119.84 111.70 107.63 107.80 122.38 +* * +* +* 48 ILE 48 1.328 1.229 1.540 1.567 1.469 120.95 116.53 120.43 107.98 111.82 110.48 123.04 * * 49 GLN 49 1.320 1.239 1.522 1.540 1.452 122.84 116.91 120.38 109.08 110.69 113.55 122.72 +* +* 50 LEU 50 1.321 1.249 1.513 1.566 1.457 121.15 115.66 121.05 111.34 109.27 111.15 123.29 +* +* 51 PHE 51 1.298 1.243 1.505 1.534 1.428 122.07 115.79 121.19 110.66 109.33 111.94 123.01 ** +* ** 52 ASP 52 1.289 1.247 1.524 1.542 1.438 121.81 115.19 121.39 112.48 110.56 109.01 123.41 +** * * +** 53 GLY 53 1.290 1.236 1.498 - 1.438 122.28 115.74 120.76 - 110.71 - 123.49 +** +** 54 ASP 54 1.314 1.242 1.514 1.535 1.445 121.72 115.24 120.81 110.05 109.55 110.96 123.92 * * 55 ASP 55 1.317 1.245 1.525 1.564 1.448 124.46 117.36 118.78 110.87 105.12 111.00 123.83 +* +* * ** ** 56 GLN 56 1.329 1.245 1.525 1.494 1.424 126.15 114.42 122.39 110.66 112.74 111.64 123.19 +* +* ** ** 57 LEU 57 1.289 1.237 1.511 1.533 1.430 122.93 116.64 120.66 110.15 108.34 110.32 122.69 +** * * +** 58 LYS 58 1.298 1.233 1.510 1.520 1.449 120.71 115.02 121.55 109.75 108.70 110.22 123.43 ** ** 59 GLY 59 1.295 1.245 1.492 - 1.424 121.39 116.68 120.12 - 110.58 - 123.20 ** * +* ** 60 GLU 60 1.296 1.240 1.510 1.529 1.417 121.40 115.33 121.25 112.78 108.25 110.60 123.41 ** ** * * ** 61 LEU 61 1.295 1.215 1.523 1.533 1.435 122.52 115.73 119.32 111.25 109.66 108.76 124.94 ** * * * ** 62 THR 62 1.346 1.238 1.536 1.598 1.492 127.92 114.50 121.57 112.75 110.51 116.60 123.86 * ** +* *** +* +** *** 63 ASP 63 1.337 1.222 1.528 1.543 1.459 124.22 115.08 121.40 108.19 109.84 109.40 123.52 * * * 64 GLY 64 1.339 1.223 1.516 - 1.466 123.97 117.95 119.55 - 116.17 - 122.50 +* * +* 65 ALA 65 1.319 1.231 1.520 1.521 1.457 120.65 114.48 121.60 111.03 109.10 110.70 123.91 66 LYS 66 1.310 1.251 1.517 1.526 1.442 124.44 117.66 119.62 110.26 108.08 109.42 122.71 * +* * +* 67 SER 67 1.315 1.247 1.488 1.523 1.403 120.31 113.68 122.13 110.08 111.20 111.34 124.18 * +* +** * +** 68 LEU 68 1.272 1.225 1.505 1.503 1.425 123.38 115.46 121.12 113.55 110.93 108.37 123.37 **** * +* +* * **** 69 LYS 69 1.313 1.230 1.518 1.535 1.444 121.67 116.02 120.79 110.23 110.04 111.31 123.15 * * 70 ASP 70 1.326 1.232 1.517 1.514 1.473 121.64 115.10 121.59 109.24 110.21 110.83 123.30 Residue-by-residue listing for refined_14 Page 8 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 71 LEU 71 1.312 1.220 1.527 1.538 1.467 122.24 116.81 120.67 109.66 111.62 111.27 122.52 * * 72 GLY 72 1.312 1.229 1.503 - 1.444 120.60 116.04 121.02 - 111.87 - 122.94 * * 73 VAL 73 1.308 1.232 1.517 1.553 1.426 121.36 114.71 121.87 110.76 108.91 112.51 123.20 +* +* +* 74 ARG 74 1.299 1.233 1.507 1.528 1.432 122.38 116.65 120.58 110.28 109.10 110.82 122.77 ** * ** 75 ASP 75 1.304 1.234 1.496 1.517 1.438 121.11 114.82 121.56 109.79 111.07 111.76 123.61 +* * * +* 76 GLY 76 1.281 1.229 1.520 - 1.451 121.05 116.96 120.47 - 113.11 - 122.57 *** *** 77 TYR 77 1.313 1.245 1.509 1.529 1.453 121.25 116.17 120.87 111.61 111.09 111.79 122.95 * * 78 ARG 78 1.306 1.235 1.513 1.527 1.429 121.01 116.73 120.73 110.06 107.64 109.32 122.55 +* +* * +* 79 ILE 79 1.291 1.233 1.499 1.557 1.436 120.59 115.34 121.07 110.80 110.25 112.48 123.58 +** * * +** 80 HIS 80 1.293 1.221 1.510 1.539 1.419 122.17 115.99 120.77 110.86 110.20 110.68 123.24 +** ** +** 81 ALA 81 1.287 1.233 1.513 1.521 1.429 122.08 117.62 120.36 110.98 108.29 109.79 121.98 +** +* * +** 82 VAL 82 1.292 1.243 1.525 1.568 1.424 119.98 114.85 121.55 111.74 111.22 111.37 123.60 +** * +* * +** 83 ASP 83 1.309 1.241 1.504 1.532 1.446 123.20 115.29 121.34 111.49 109.93 109.89 123.37 * * * 84 VAL 84 1.292 1.244 1.526 1.549 1.432 122.13 117.06 120.51 109.61 110.95 110.71 122.34 +** * +** 85 THR 85 1.322 1.230 1.535 1.562 1.442 119.80 116.48 120.86 111.75 110.86 112.05 122.65 * * * 86 GLY 86 1.317 1.236 1.506 - 1.451 120.20 114.71 121.37 - 110.41 - 123.91 87 GLY 87 1.326 1.228 1.510 - 1.444 122.74 115.92 121.15 - 114.06 - 122.90 * * 88 ASN 88 1.301 1.230 1.510 1.534 1.441 122.06 115.78 121.00 110.63 111.34 111.89 123.21 +* +* 89 GLU 89 1.304 1.232 1.524 1.556 1.449 122.82 114.74 121.94 113.72 110.34 110.82 123.32 +* * +* +* 90 ASP 90 1.313 - 1.505 1.529 1.444 122.97 - - 110.21 108.87 111.10 - * * ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: **** *** ** ** +** *** * * +* ** +** * **** ----------------------------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_14 Page 9 ---------------------------------------- A N A L Y S I S O F M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S +------------------+ | BOND LENGTHS | +------------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Bond X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- C-N C-NH1 (except Pro) 1.329 .014 87 1.270 1.346 1.307 .015 **** * +* C-N (Pro) 1.341 .016 2 1.345 1.354 1.349 .004 C-O C-O 1.231 .020 89 1.165 1.261 1.233 .012 *** +* CA-C CH1E-C (except Gly) 1.525 .021 81 1.481 1.565 1.518 .016 ** +* CH2G*-C (Gly) 1.516 .018 9 1.492 1.520 1.508 .009 * CA-CB CH1E-CH3E (Ala) 1.521 .033 4 1.516 1.522 1.520 .002 CH1E-CH1E (Ile,Thr,Val) 1.540 .027 18 1.525 1.598 1.557 .015 ** CH1E-CH2E (the rest) 1.530 .020 59 1.494 1.566 1.529 .014 +* +* N-CA NH1-CH1E (except Gly,Pro)1.458 .019 79 1.403 1.492 1.443 .017 +** +* NH1-CH2G* (Gly) 1.451 .016 9 1.424 1.466 1.448 .012 +* N-CH1E (Pro) 1.466 .015 2 1.464 1.465 1.464 .000 ------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_14 Page 10 ---------------------------------------- +-----------------+ | BOND ANGLES | +-----------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Angle X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- CA-C-N CH1E-C-NH1 (except Gly,Pro)116.2 2.0 78 113.68 118.53 116.02 .96 * * CH2G*-C-NH1 (Gly) 116.4 2.1 9 114.60 117.95 116.09 .99 CH1E-C-N (Pro) 116.9 1.5 2 115.91 116.60 116.26 .34 O-C-N O-C-NH1 (except Pro) 123.0 1.6 87 121.64 124.94 123.10 .54 * O-C-N (Pro) 122.0 1.4 2 122.55 122.91 122.73 .18 C-N-CA C-NH1-CH1E (except Gly,Pro)121.7 1.8 78 119.80 127.92 122.26 1.32 * *** C-NH1-CH2G* (Gly) 120.6 1.7 9 120.20 123.97 121.61 1.12 +* C-N-CH1E (Pro) 122.6 5.0 2 122.53 122.81 122.67 .14 CA-C-O CH1E-C-O (except Gly) 120.8 1.7 80 118.78 122.39 120.86 .64 * CH2G*-C-O (Gly) 120.8 2.1 9 119.55 121.37 120.73 .56 CB-CA-C CH3E-CH1E-C (Ala) 110.5 1.5 4 110.98 111.34 111.17 .16 CH1E-CH1E-C (Ile,Thr,Val) 109.1 2.2 18 107.14 112.75 110.08 1.45 +* CH2E-CH1E-C (the rest) 110.1 1.9 59 107.61 113.72 110.56 1.21 * +* N-CA-C NH1-CH1E-C (except Gly,Pro)111.2 2.8 79 105.12 115.51 109.94 1.78 ** +* NH1-CH2G*-C (Gly) 112.5 2.9 9 110.41 116.17 112.33 1.80 * N-CH1E-C (Pro) 111.8 2.5 2 111.96 112.55 112.25 .30 N-CA-CB NH1-CH1E-CH3E (Ala) 110.4 1.5 4 109.77 110.87 110.28 .51 NH1-CH1E-CH1E (Ile,Thr,Val) 111.5 1.7 18 108.41 116.60 111.68 1.55 +* +** N-CH1E-CH2E (Pro) 103.0 1.1 2 103.62 103.66 103.64 .02 NH1-CH1E-CH2E (the rest) 110.5 1.7 57 105.95 114.26 110.37 1.63 +** ** ------------------------------------------------------------------------------------------------------------- The small molecule data used in the above analysis is from Engh & Huber (1991). The atom labelling follows that used in the X-PLOR dictionary, with some additional atoms (marked with an asterisk) as defined by Engh & Huber. Residue-by-residue listing for refined_14 Page 11 ---------------------------------------- R A M A C H A N D R A N P L O T S T A T I S T I C S Residues in most favoured regions [A,B,L] 67 87.0% Residues in additional allowed regions [a,b,l,p] 7 9.1% Residues in generously allowed regions [~a,~b,~l,~p] 2 2.6% Residues in disallowed regions [XX] 1 1.3% ---- ------ Number of non-glycine and non-proline residues 77 100.0% Number of end-residues (excl. Gly and Pro) 2 Number of glycine residues 9 Number of proline residues 2 ---- Total number of residues 90 Based on the analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20%, a good quality model would be expected to have over 90% in the most favoured regions [E,H,L]. S T E R E O C H E M I S T R Y O F M A I N - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. %-tage residues in A, B, L 77 87.0 83.8 10.0 .3 Inside b. Omega angle st dev 89 3.8 6.0 3.0 -.7 Inside c. Bad contacts / 100 residues 0 .0 4.2 10.0 -.4 Inside d. Zeta angle st dev 81 1.6 3.1 1.6 -1.0 Inside e. H-bond energy st dev 50 .9 .8 .2 .3 Inside f. Overall G-factor 90 .0 -.4 .3 1.3 BETTER S T E R E O C H E M I S T R Y O F S I D E - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. Chi-1 gauche minus st dev 9 4.9 18.1 6.5 -2.0 BETTER b. Chi-1 trans st dev 31 8.0 19.0 5.3 -2.1 BETTER c. Chi-1 gauche plus st dev 35 9.7 17.5 4.9 -1.6 BETTER d. Chi-1 pooled st dev 75 9.5 18.2 4.8 -1.8 BETTER e. Chi-2 trans st dev 23 5.1 20.4 5.0 -3.1 BETTER M O R R I S E T A L . C L A S S I F I C A T I O N Mean St.dev Classification Parameter m s 1 2 3 4 Value Class --------- ---- --- ------------------------------------ ----- ----- Phi-psi distribution - - >75.0% >65.0% >55.0% <55.0% 87.0 1 Chi-1 st.dev. 18.2 6.2 <12.0 <18.2 <24.4 >24.4 11.0 1 H-bond energy st dev .87 .24 < .63 < .87 <1.11 >1.11 .87 3 Residue-by-residue listing for refined_14 Page 12 ---------------------------------------- G - F A C T O R S Average Parameter Score Score --------- ----- ----- Dihedral angles:- Phi-psi distribution -.36 Chi1-chi2 distribution .02 Chi1 only -.19 Chi3 & chi4 .51 Omega .04 ------ -.05 ===== Main-chain covalent forces:- Main-chain bond lengths -.20 Main-chain bond angles .40 ------ .15 ===== OVERALL AVERAGE .01 ===== Ideally, scores should be above -0.5. Values below -1.0 may need investigation.