data_1dn3_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1dn3 _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' GLN . . . . . 0.439 ' HG2' ' HB1' ' A' ' 4' ' ' ALA . 15.8 tt0 . . . . . 0 N--CA 1.496 1.86 0 CA-C-O 121.265 0.555 . . . . 7.29 110.302 . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ALA . . . . . 0.621 ' N ' ' HD2' ' A' ' 3' ' ' PRO . . . -71.94 -47.5 11.52 Favored Pre-proline 0 N--CA 1.498 1.93 0 O-C-N 121.228 -0.92 . . . . 3.68 111.911 -179.829 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' PRO . . . . . 0.621 ' HD2' ' N ' ' A' ' 2' ' ' ALA . 36.3 Cg_endo -58.92 -9.48 7.82 Favored 'Trans proline' 0 N--CA 1.488 1.181 0 O-C-N 123.25 1.132 . . . . 3.42 111.693 -179.319 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ALA . . . . . 0.439 ' HB1' ' HG2' ' A' ' 1' ' ' GLN . . . -61.53 -29.44 70.0 Favored 'General case' 0 N--CA 1.487 1.383 0 N-CA-C 107.898 -1.149 . . . . 2.25 107.898 176.684 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' TYR . . . . . 0.461 ' CD1' ' C ' ' A' ' 5' ' ' TYR . 0.1 OUTLIER -67.24 -39.74 86.2 Favored 'General case' 0 N--CA 1.493 1.708 0 O-C-N 121.856 -0.528 . . . . 3.1 109.847 178.932 . . . . . . . . 3 3 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' LYS . . . . . 0.57 ' HG2' ' HA ' ' A' ' 3' ' ' PRO . 18.7 ptpt -83.83 -27.01 29.05 Favored 'General case' 0 N--CA 1.496 1.854 0 O-C-N 121.602 -0.687 . . . . 3.62 110.434 -179.91 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' LYS . . . . . . . . . . . . . 0.0 OUTLIER -68.13 -46.91 69.55 Favored 'General case' 0 N--CA 1.495 1.816 0 O-C-N 121.323 -0.861 . . . . 5.47 109.484 179.151 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ALA . . . . . . . . . . . . . . . -60.88 -46.27 91.28 Favored 'General case' 0 N--CA 1.497 1.9 0 O-C-N 121.614 -0.679 . . . . 1.64 110.145 179.248 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ALA . . . . . 0.512 ' HA ' HD11 ' A' ' 12' ' ' LEU . . . -59.5 -41.41 89.84 Favored 'General case' 0 N--CA 1.497 1.91 0 O-C-N 121.619 -0.675 . . . . 1.4 110.19 179.616 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' LYS . . . . . . . . . . . . . 22.3 mttm -62.84 -46.89 85.79 Favored 'General case' 0 N--CA 1.497 1.879 0 O-C-N 121.591 -0.693 . . . . 3.74 110.208 179.715 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' LYS . . . . . . . . . . . . . 32.4 mmtt -57.23 -37.03 71.65 Favored 'General case' 0 N--CA 1.498 1.944 0 O-C-N 121.474 -0.766 . . . . 3.84 110.003 179.573 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 12' ' ' LEU . . . . . 0.512 HD11 ' HA ' ' A' ' 9' ' ' ALA . 54.1 mt -64.27 -37.24 86.78 Favored 'General case' 0 N--CA 1.497 1.905 0 O-C-N 121.457 -0.777 . . . . 2.53 109.455 178.835 . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 13' ' ' ALA . . . . . . . . . . . . . . . -77.3 -26.01 51.85 Favored 'General case' 0 N--CA 1.494 1.726 0 O-C-N 121.727 -0.608 . . . . 1.67 109.825 178.981 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 14' ' ' GLU . . . . . . . . . . . . . 8.1 mm-40 -96.04 24.77 5.28 Favored 'General case' 0 N--CA 1.498 1.927 0 O-C-N 121.563 -0.711 . . . . 2.43 110.264 179.448 . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 15' ' ' SER . . . . . . . . . . . . . 14.0 t . . . . . 0 N--CA 1.498 1.97 0 CA-C-O 118.107 -0.949 . . . . 2.38 110.551 -179.815 . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 1' ' ' GLN . . . . . 0.526 ' HG2' ' HB2' ' A' ' 4' ' ' ALA . 15.8 tt0 . . . . . 0 N--CA 1.496 1.86 0 CA-C-O 121.265 0.555 . . . . 6.6299999999999999 110.302 . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ALA . . . . . 0.635 ' N ' ' HD2' ' A' ' 3' ' ' PRO . . . -71.94 -47.5 11.52 Favored Pre-proline 0 N--CA 1.498 1.93 0 O-C-N 121.228 -0.92 . . . . 3.2000000000000002 111.911 -179.829 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' PRO . . . . . 0.668 ' HA ' ' HG2' ' A' ' 6' ' ' LYS . 36.3 Cg_endo -58.92 -9.48 7.82 Favored 'Trans proline' 0 N--CA 1.488 1.181 0 O-C-N 123.25 1.132 . . . . 2.8100000000000001 111.693 -179.319 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ALA . . . . . 0.526 ' HB2' ' HG2' ' A' ' 1' ' ' GLN . . . -61.53 -29.44 70.0 Favored 'General case' 0 N--CA 1.487 1.383 0 N-CA-C 107.898 -1.149 . . . . 1.79 107.898 176.684 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 5' ' ' TYR . . . . . 0.461 ' CD1' ' C ' ' A' ' 5' ' ' TYR . 0.1 OUTLIER -67.24 -39.74 86.2 Favored 'General case' 0 N--CA 1.493 1.708 0 O-C-N 121.856 -0.528 . . . . 2.7200000000000002 109.847 178.932 . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 6' ' ' LYS . . . . . 0.668 ' HG2' ' HA ' ' A' ' 3' ' ' PRO . 18.7 ptpt -83.83 -27.01 29.05 Favored 'General case' 0 N--CA 1.496 1.854 0 O-C-N 121.602 -0.687 . . . . 3.0899999999999999 110.434 -179.91 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' LYS . . . . . . . . . . . . . 0.0 OUTLIER -68.13 -46.91 69.55 Favored 'General case' 0 N--CA 1.495 1.816 0 O-C-N 121.323 -0.861 . . . . 5.0599999999999996 109.484 179.151 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ALA . . . . . . . . . . . . . . . -60.88 -46.27 91.28 Favored 'General case' 0 N--CA 1.497 1.9 0 O-C-N 121.614 -0.679 . . . . 1.1699999999999999 110.145 179.248 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ALA . . . . . 0.535 ' HA ' HD12 ' A' ' 12' ' ' LEU . . . -59.5 -41.41 89.84 Favored 'General case' 0 N--CA 1.497 1.91 0 O-C-N 121.619 -0.675 . . . . 0.82999999999999996 110.19 179.616 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 10' ' ' LYS . . . . . . . . . . . . . 22.3 mttm -62.84 -46.89 85.79 Favored 'General case' 0 N--CA 1.497 1.879 0 O-C-N 121.591 -0.693 . . . . 3.4100000000000001 110.208 179.715 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 11' ' ' LYS . . . . . . . . . . . . . 32.4 mmtt -57.23 -37.03 71.65 Favored 'General case' 0 N--CA 1.498 1.944 0 O-C-N 121.474 -0.766 . . . . 3.4500000000000002 110.003 179.573 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 12' ' ' LEU . . . . . 0.535 HD12 ' HA ' ' A' ' 9' ' ' ALA . 54.1 mt -64.27 -37.24 86.78 Favored 'General case' 0 N--CA 1.497 1.905 0 O-C-N 121.457 -0.777 . . . . 2.0499999999999998 109.455 178.835 . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 13' ' ' ALA . . . . . . . . . . . . . . . -77.3 -26.01 51.85 Favored 'General case' 0 N--CA 1.494 1.726 0 O-C-N 121.727 -0.608 . . . . 1.1399999999999999 109.825 178.981 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 14' ' ' GLU . . . . . . . . . . . . . 8.1 mm-40 -96.04 24.77 5.28 Favored 'General case' 0 N--CA 1.498 1.927 0 O-C-N 121.563 -0.711 . . . . 2.4300000000000002 110.264 179.448 . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 15' ' ' SER . . . . . . . . . . . . . 14.0 t . . . . . 0 N--CA 1.498 1.97 0 CA-C-O 118.107 -0.949 . . . . 2.2599999999999998 110.551 -179.815 . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' GLN . . . . . 0.526 ' HG2' ' HB2' ' A' ' 4' ' ' ALA . 15.8 tt0 . . . . . 0 N--CA 1.496 1.86 0 CA-C-O 121.265 0.555 . . . . 6.6299999999999999 110.302 . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ALA . . . . . 0.635 ' N ' ' HD2' ' A' ' 3' ' ' PRO . . . -71.94 -47.5 11.52 Favored Pre-proline 0 N--CA 1.498 1.93 0 O-C-N 121.228 -0.92 . . . . 3.2000000000000002 111.911 -179.829 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' PRO . . . . . 0.668 ' HA ' ' HG2' ' A' ' 6' ' ' LYS . 36.3 Cg_endo -58.92 -9.48 7.82 Favored 'Trans proline' 0 N--CA 1.488 1.181 0 O-C-N 123.25 1.132 . . . . 2.8100000000000001 111.693 -179.319 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ALA . . . . . 0.526 ' HB2' ' HG2' ' A' ' 1' ' ' GLN . . . -61.53 -29.44 70.0 Favored 'General case' 0 N--CA 1.487 1.383 0 N-CA-C 107.898 -1.149 . . . . 1.79 107.898 176.684 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' TYR . . . . . 0.461 ' CD1' ' C ' ' A' ' 5' ' ' TYR . 0.1 OUTLIER -67.24 -39.74 86.2 Favored 'General case' 0 N--CA 1.493 1.708 0 O-C-N 121.856 -0.528 . . . . 2.7200000000000002 109.847 178.932 . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' LYS . . . . . 0.668 ' HG2' ' HA ' ' A' ' 3' ' ' PRO . 18.7 ptpt -83.83 -27.01 29.05 Favored 'General case' 0 N--CA 1.496 1.854 0 O-C-N 121.602 -0.687 . . . . 3.0899999999999999 110.434 -179.91 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' LYS . . . . . . . . . . . . . 0.0 OUTLIER -68.13 -46.91 69.55 Favored 'General case' 0 N--CA 1.495 1.816 0 O-C-N 121.323 -0.861 . . . . 5.0599999999999996 109.484 179.151 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ALA . . . . . . . . . . . . . . . -60.88 -46.27 91.28 Favored 'General case' 0 N--CA 1.497 1.9 0 O-C-N 121.614 -0.679 . . . . 1.1699999999999999 110.145 179.248 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ALA . . . . . 0.535 ' HA ' HD12 ' A' ' 12' ' ' LEU . . . -59.5 -41.41 89.84 Favored 'General case' 0 N--CA 1.497 1.91 0 O-C-N 121.619 -0.675 . . . . 0.82999999999999996 110.19 179.616 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' LYS . . . . . . . . . . . . . 22.3 mttm -62.84 -46.89 85.79 Favored 'General case' 0 N--CA 1.497 1.879 0 O-C-N 121.591 -0.693 . . . . 3.4100000000000001 110.208 179.715 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' LYS . . . . . . . . . . . . . 32.4 mmtt -57.23 -37.03 71.65 Favored 'General case' 0 N--CA 1.498 1.944 0 O-C-N 121.474 -0.766 . . . . 3.4500000000000002 110.003 179.573 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 12' ' ' LEU . . . . . 0.535 HD12 ' HA ' ' A' ' 9' ' ' ALA . 54.1 mt -64.27 -37.24 86.78 Favored 'General case' 0 N--CA 1.497 1.905 0 O-C-N 121.457 -0.777 . . . . 2.0499999999999998 109.455 178.835 . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 13' ' ' ALA . . . . . . . . . . . . . . . -77.3 -26.01 51.85 Favored 'General case' 0 N--CA 1.494 1.726 0 O-C-N 121.727 -0.608 . . . . 1.1399999999999999 109.825 178.981 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 14' ' ' GLU . . . . . . . . . . . . . 8.1 mm-40 -96.04 24.77 5.28 Favored 'General case' 0 N--CA 1.498 1.927 0 O-C-N 121.563 -0.711 . . . . 2.4300000000000002 110.264 179.448 . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 15' ' ' SER . . . . . . . . . . . . . 14.0 t . . . . . 0 N--CA 1.498 1.97 0 CA-C-O 118.107 -0.949 . . . . 2.2599999999999998 110.551 -179.815 . . . . . . . . 0 0 . 1 stop_ save_