data_1a9j_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1a9j _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 4 C4'--C3' 1.441 -8.696 1 O4'-C1'-C2' 101.36 -4.309 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 6 P--OP1 1.241 -14.363 3 O4'-C1'-N19 112.396 5.745 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 P--O5' 1.54 -5.321 2 P-O3'-C3' 125.548 4.873 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.479 -3.87 2 P-O3'-C3' 126.943 6.036 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DA' . . . . . 0.422 ' C6 ' ' C6 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 3 P--OP1 1.395 -5.296 0 C4'-C3'-C2' 99.435 -3.765 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' AAB . . . . . 0.463 " O5'" H2'2 ' A' ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.487 -3.132 1 P-O3'-C3' 124.615 4.096 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 7 P--OP1 1.356 -7.597 2 P-O3'-C3' 125.374 4.729 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 2 P--O3' 1.515 -7.657 2 P-O3'-C3' 133.389 11.407 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.426 -3.48 1 P-O3'-C3' 126.071 5.309 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.536 -5.695 2 P-O3'-C3' 126.716 5.846 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.48 -3.829 2 O4'-C1'-N19 111.958 5.198 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 13' ' ' ' DG' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 14' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.483 -3.541 2 O4'-C1'-N19 112.003 5.254 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 14' ' ' ' DC' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DG' . . . . . . . . 0 C3'--C2' 1.485 -3.26 1 P-O3'-C3' 126.222 5.435 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 15' ' ' ' DG' . . . . . 0.407 H2'' ' H71' ' B' ' 16' ' ' ' DT' . . . . . . . . 0 C3'--C2' 1.5 -1.787 1 P-O3'-C3' 125.193 4.577 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 16' ' ' ' DT' . . . . . 0.407 ' H71' H2'' ' B' ' 15' ' ' ' DG' . . . . . . . . 3 P--O3' 1.545 -5.142 4 P-O3'-C3' 128.473 7.311 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' B' B ' 17' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' A' ' 7' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.481 -3.701 3 C4'-C3'-C2' 98.916 -4.284 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.432 -3.138 1 O4'-C1'-N19 111.214 4.268 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP2 1.431 -3.193 1 P-O3'-C3' 126.901 6.0 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C3'--C2' 1.469 -4.927 1 P-O3'-C3' 126.204 5.42 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 21' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 3 C3'--C2' 1.46 -5.786 1 P-O3'-C3' 131.323 9.686 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear orig full ' B' B ' 22' ' ' ' DG' . . . . . 1.202 HO3' " C3'" ' B' ' 22' ' ' ' DG' . . . . . . . . 8 P--O5' 1.452 -14.112 4 C4'-C3'-C2' 97.206 -5.994 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear orig full ' A' A ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 4 C4'--C3' 1.441 -8.696 1 O4'-C1'-C2' 101.36 -4.309 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 6 P--OP1 1.241 -14.363 3 O4'-C1'-N19 112.396 5.745 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 P--O5' 1.54 -5.321 2 P-O3'-C3' 125.548 4.873 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.479 -3.87 2 P-O3'-C3' 126.943 6.036 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DA' . . . . . 0.422 ' C6 ' ' C6 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 3 P--OP1 1.395 -5.296 0 C4'-C3'-C2' 99.435 -3.765 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.487 -3.132 1 P-O3'-C3' 124.615 4.096 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 7 P--OP1 1.356 -7.597 2 P-O3'-C3' 125.374 4.729 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 2 P--O3' 1.515 -7.657 2 P-O3'-C3' 133.389 11.407 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.426 -3.48 1 P-O3'-C3' 126.071 5.309 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.536 -5.695 2 P-O3'-C3' 126.716 5.846 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.48 -3.829 2 O4'-C1'-N19 111.958 5.198 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 13' ' ' ' DG' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 14' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.483 -3.541 2 O4'-C1'-N19 112.003 5.254 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 14' ' ' ' DC' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DG' . . . . . . . . 0 C3'--C2' 1.485 -3.26 1 P-O3'-C3' 126.222 5.435 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 15' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.5 -1.787 1 P-O3'-C3' 125.193 4.577 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 16' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 3 P--O3' 1.545 -5.142 4 P-O3'-C3' 128.473 7.311 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 17' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' A' ' 7' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.481 -3.701 3 C4'-C3'-C2' 98.916 -4.284 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.432 -3.138 1 O4'-C1'-N19 111.214 4.268 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP2 1.431 -3.193 1 P-O3'-C3' 126.901 6.0 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C3'--C2' 1.469 -4.927 1 P-O3'-C3' 126.204 5.42 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear build full ' B' B ' 21' ' ' ' DC' . . . . . 0.412 H2'' " O5'" ' B' ' 22' ' ' ' DG' . . . . . . . . 3 C3'--C2' 1.46 -5.786 1 P-O3'-C3' 131.323 9.686 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' B' B ' 22' ' ' ' DG' . . . . . 0.412 " O5'" H2'' ' B' ' 21' ' ' ' DC' . . . . . . . . 8 P--O5' 1.452 -14.112 4 C4'-C3'-C2' 97.206 -5.994 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear build full ' A' A ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 4 C4'--C3' 1.441 -8.696 1 O4'-C1'-C2' 101.36 -4.309 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 6 P--OP1 1.241 -14.363 3 O4'-C1'-N19 112.396 5.745 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 1 P--O5' 1.54 -5.321 2 P-O3'-C3' 125.548 4.873 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.479 -3.87 2 P-O3'-C3' 126.943 6.036 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DA' . . . . . 0.422 ' C6 ' ' C6 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 3 P--OP1 1.395 -5.296 0 C4'-C3'-C2' 99.435 -3.765 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' AAB . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' B' ' 17' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.487 -3.132 1 P-O3'-C3' 124.615 4.096 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 7 P--OP1 1.356 -7.597 2 P-O3'-C3' 125.374 4.729 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 2 P--O3' 1.515 -7.657 2 P-O3'-C3' 133.389 11.407 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.426 -3.48 1 P-O3'-C3' 126.071 5.309 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 2 P--O5' 1.536 -5.695 2 P-O3'-C3' 126.716 5.846 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 12' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C5'--C4' 1.48 -3.829 2 O4'-C1'-N19 111.958 5.198 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 13' ' ' ' DG' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 14' ' ' ' DC' . . . . . . . . 0 C3'--C2' 1.483 -3.541 2 O4'-C1'-N19 112.003 5.254 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 14' ' ' ' DC' . . . . . 0.424 ' C2 ' ' C2 ' ' B' ' 13' ' ' ' DG' . . . . . . . . 0 C3'--C2' 1.485 -3.26 1 P-O3'-C3' 126.222 5.435 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 15' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 0 C3'--C2' 1.5 -1.787 1 P-O3'-C3' 125.193 4.577 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 16' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 3 P--O3' 1.545 -5.142 4 P-O3'-C3' 128.473 7.311 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 17' ' ' ' DA' . . . . . 0.541 ' C2 ' ' C2 ' ' A' ' 7' ' ' ' DA' . . . . . . . . 0 C3'--C2' 1.481 -3.701 3 C4'-C3'-C2' 98.916 -4.284 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 18' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--OP1 1.432 -3.138 1 O4'-C1'-N19 111.214 4.268 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 19' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . 0 P--OP2 1.431 -3.193 1 P-O3'-C3' 126.901 6.0 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 20' ' ' ' DG' . . . . . . . . . . . . . . . . . . . . 1 C3'--C2' 1.469 -4.927 1 P-O3'-C3' 126.204 5.42 . . . . 0.0 . . . . . . . . . . 2 1 . 1 . 001 nuclear nobuild full ' B' B ' 21' ' ' ' DC' . . . . . 0.412 H2'' " O5'" ' B' ' 22' ' ' ' DG' . . . . . . . . 3 C3'--C2' 1.46 -5.786 1 P-O3'-C3' 131.323 9.686 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' B' B ' 22' ' ' ' DG' . . . . . 0.412 " O5'" H2'' ' B' ' 21' ' ' ' DC' . . . . . . . . 8 P--O5' 1.452 -14.112 4 C4'-C3'-C2' 97.206 -5.994 . . . . 0.0 . . . . . . . . . . 3 2 . 1 . 001 nuclear nobuild full ' A' A ' 23' ' ' HOH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 stop_ save_