data_1rme_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1rme _Structure_validation_residue.Date_analyzed 2016-10-07 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' MCY . . . . . 0.415 H2'' " O5'" ' A' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' DC' . . . . . 0.415 " O5'" H2'' ' A' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.526 1.927 1 O4'-C1'-N19 111.029 4.037 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.616 2.303 0 O4'-C1'-N19 110.534 3.417 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' DC' . . . . . 0.46 ' C4 ' ' N4 ' ' B' ' 2' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.27 0 O4'-C1'-N19 110.604 3.505 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' DC' . . . . . 0.499 ' C4 ' ' N4 ' ' B' ' 1' ' ' MCY . . . . . . . . 0 C3'--C2' 1.499 -1.947 1 O4'-C1'-N19 111.082 4.103 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 1' ' ' MCY . . . . . 0.499 ' N4 ' ' C4 ' ' A' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 2' ' ' ' DC' . . . . . 0.46 ' N4 ' ' C4 ' ' A' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.178 1 O4'-C1'-N19 111.142 4.177 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' B' B ' 3' ' ' ' DT' . . . . . 0.723 " H4'" " O5'" ' B' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.276 0 O4'-C1'-N19 110.578 3.473 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 4' ' ' ' DC' . . . . . 0.723 " O5'" " H4'" ' B' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.23 0 O4'-C1'-N19 110.685 3.606 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' B' B ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' D' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.526 1.903 0 O4'-C1'-N19 110.908 3.885 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' C' C ' 1' ' ' MCY . . . . . 0.46 H2'' " O5'" ' C' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' C' C ' 2' ' ' ' DC' . . . . . 0.639 H2'' " O4'" ' C' ' 3' ' ' ' DT' . . . . . . . . 0 P--O5' 1.612 1.89 1 O4'-C1'-N19 111.22 4.275 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' C' C ' 3' ' ' ' DT' . . . . . 0.639 " O4'" H2'' ' C' ' 2' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.247 0 O4'-C1'-N19 110.886 3.857 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' C' C ' 4' ' ' ' DC' . . . . . 0.458 ' C4 ' ' N4 ' ' D' ' 2' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.444 1.828 1 O4'-C1'-N19 111.496 4.62 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' C' C ' 5' ' ' ' DC' . . . . . 0.49 ' C4 ' ' C4 ' ' D' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.528 2.122 0 O4'-C1'-N19 110.97 3.962 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' D' D ' 1' ' ' MCY . . . . . 0.49 ' C4 ' ' C4 ' ' C' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' D' D ' 2' ' ' ' DC' . . . . . 0.458 ' N4 ' ' C4 ' ' C' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.614 2.13 1 O4'-C1'-N19 111.355 4.444 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' D' D ' 3' ' ' ' DT' . . . . . 0.631 " H4'" " O5'" ' D' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.531 2.478 0 O4'-C1'-N19 110.689 3.611 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' D' D ' 4' ' ' ' DC' . . . . . 0.631 " O5'" " H4'" ' D' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.527 1.965 0 O4'-C1'-N19 110.891 3.864 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' D' D ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' B' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.527 2.005 0 O4'-C1'-N19 110.842 3.802 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 1' ' ' MCY . . . . . 0.416 H2'' " O5'" ' A' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' DC' . . . . . 0.416 " O5'" H2'' ' A' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.526 1.927 1 O4'-C1'-N19 111.029 4.037 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.616 2.303 0 O4'-C1'-N19 110.534 3.417 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' DC' . . . . . 0.46 ' C4 ' ' N4 ' ' B' ' 2' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.27 0 O4'-C1'-N19 110.604 3.505 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' DC' . . . . . 0.499 ' C4 ' ' N4 ' ' B' ' 1' ' ' MCY . . . . . . . . 0 C3'--C2' 1.499 -1.947 1 O4'-C1'-N19 111.082 4.103 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 1' ' ' MCY . . . . . 0.499 ' N4 ' ' C4 ' ' A' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 2' ' ' ' DC' . . . . . 0.46 ' N4 ' ' C4 ' ' A' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.178 1 O4'-C1'-N19 111.142 4.177 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' B' B ' 3' ' ' ' DT' . . . . . 0.709 " H4'" " O5'" ' B' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.276 0 O4'-C1'-N19 110.578 3.473 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 4' ' ' ' DC' . . . . . 0.709 " O5'" " H4'" ' B' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.23 0 O4'-C1'-N19 110.685 3.606 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' B' B ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' D' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.526 1.903 0 O4'-C1'-N19 110.908 3.885 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' C' C ' 1' ' ' MCY . . . . . 0.459 H2'' " O5'" ' C' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' C' C ' 2' ' ' ' DC' . . . . . 0.643 H2'' " O4'" ' C' ' 3' ' ' ' DT' . . . . . . . . 0 P--O5' 1.612 1.89 1 O4'-C1'-N19 111.22 4.275 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' C' C ' 3' ' ' ' DT' . . . . . 0.643 " O4'" H2'' ' C' ' 2' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.247 0 O4'-C1'-N19 110.886 3.857 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' C' C ' 4' ' ' ' DC' . . . . . 0.458 ' C4 ' ' N4 ' ' D' ' 2' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.444 1.828 1 O4'-C1'-N19 111.496 4.62 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' C' C ' 5' ' ' ' DC' . . . . . 0.49 ' C4 ' ' C4 ' ' D' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.528 2.122 0 O4'-C1'-N19 110.97 3.962 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' D' D ' 1' ' ' MCY . . . . . 0.49 ' C4 ' ' C4 ' ' C' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' D' D ' 2' ' ' ' DC' . . . . . 0.458 ' N4 ' ' C4 ' ' C' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.614 2.13 1 O4'-C1'-N19 111.355 4.444 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' D' D ' 3' ' ' ' DT' . . . . . 0.615 " H4'" " O5'" ' D' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.531 2.478 0 O4'-C1'-N19 110.689 3.611 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' D' D ' 4' ' ' ' DC' . . . . . 0.615 " O5'" " H4'" ' D' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.527 1.965 0 O4'-C1'-N19 110.891 3.864 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' D' D ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' B' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.527 2.005 0 O4'-C1'-N19 110.842 3.802 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' MCY . . . . . 0.416 H2'' " O5'" ' A' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' DC' . . . . . 0.416 " O5'" H2'' ' A' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.526 1.927 1 O4'-C1'-N19 111.029 4.037 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' DT' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.616 2.303 0 O4'-C1'-N19 110.534 3.417 . . . . 0.0 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' DC' . . . . . 0.46 ' C4 ' ' N4 ' ' B' ' 2' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.27 0 O4'-C1'-N19 110.604 3.505 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' DC' . . . . . 0.499 ' C4 ' ' N4 ' ' B' ' 1' ' ' MCY . . . . . . . . 0 C3'--C2' 1.499 -1.947 1 O4'-C1'-N19 111.082 4.103 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 1' ' ' MCY . . . . . 0.499 ' N4 ' ' C4 ' ' A' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 2' ' ' ' DC' . . . . . 0.46 ' N4 ' ' C4 ' ' A' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.178 1 O4'-C1'-N19 111.142 4.177 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' B' B ' 3' ' ' ' DT' . . . . . 0.709 " H4'" " O5'" ' B' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.529 2.276 0 O4'-C1'-N19 110.578 3.473 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 4' ' ' ' DC' . . . . . 0.709 " O5'" " H4'" ' B' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.529 2.23 0 O4'-C1'-N19 110.685 3.606 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' B' B ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' D' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.526 1.903 0 O4'-C1'-N19 110.908 3.885 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' C' C ' 1' ' ' MCY . . . . . 0.459 H2'' " O5'" ' C' ' 2' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' C' C ' 2' ' ' ' DC' . . . . . 0.643 H2'' " O4'" ' C' ' 3' ' ' ' DT' . . . . . . . . 0 P--O5' 1.612 1.89 1 O4'-C1'-N19 111.22 4.275 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' C' C ' 3' ' ' ' DT' . . . . . 0.643 " O4'" H2'' ' C' ' 2' ' ' ' DC' . . . . . . . . 0 P--O5' 1.615 2.247 0 O4'-C1'-N19 110.886 3.857 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' C' C ' 4' ' ' ' DC' . . . . . 0.458 ' C4 ' ' N4 ' ' D' ' 2' ' ' ' DC' . . . . . . . . 0 O4'--C1' 1.444 1.828 1 O4'-C1'-N19 111.496 4.62 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' C' C ' 5' ' ' ' DC' . . . . . 0.49 ' C4 ' ' C4 ' ' D' ' 1' ' ' MCY . . . . . . . . 0 C5'--C4' 1.528 2.122 0 O4'-C1'-N19 110.97 3.962 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' D' D ' 1' ' ' MCY . . . . . 0.49 ' C4 ' ' C4 ' ' C' ' 5' ' ' ' DC' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' D' D ' 2' ' ' ' DC' . . . . . 0.458 ' N4 ' ' C4 ' ' C' ' 4' ' ' ' DC' . . . . . . . . 0 P--O5' 1.614 2.13 1 O4'-C1'-N19 111.355 4.444 . . . . 0.0 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' D' D ' 3' ' ' ' DT' . . . . . 0.615 " H4'" " O5'" ' D' ' 4' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.531 2.478 0 O4'-C1'-N19 110.689 3.611 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' D' D ' 4' ' ' ' DC' . . . . . 0.615 " O5'" " H4'" ' D' ' 3' ' ' ' DT' . . . . . . . . 0 C5'--C4' 1.527 1.965 0 O4'-C1'-N19 110.891 3.864 . . . . 0.0 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' D' D ' 5' ' ' ' DC' . . . . . 0.414 ' N3 ' ' N3 ' ' B' ' 5' ' ' ' DC' . . . . . . . . 0 C5'--C4' 1.527 2.005 0 O4'-C1'-N19 110.842 3.802 . . . . 0.0 . . . . . . . . . . 1 1 . 1 stop_ save_