data_6jji_residue ############################ # Computer software used # ############################ save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 6jji _Structure_validation_residue.Date_analyzed 2020-02-21 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 ecloud orig full ' B' B ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.421 -1.197 0 O4'-C1'-C2' 107.986 1.133 . 0.0 '__' . 97.81 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 2' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.876 0 O5'-C5'-C4' 113.247 2.176 . 0.423 5z . 66.62 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 3' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.42 -1.236 0 O5'-C5'-C4' 112.108 1.363 . 0.0 OUTLIER . 103.94 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 4' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.042 0 O5'-C5'-C4' 112.049 1.321 . 0.0 OUTLIER . 166.81 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 5' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.315 0 O5'-C5'-C4' 111.787 1.133 . 0.0 OUTLIER alpha 93.44 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.392 0 O4'-C1'-N19 110.313 2.113 . 0.091 0i . 81.9 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 7' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.089 0 P-O3'-C3' 121.193 1.244 . 0.0 OUTLIER . 76.43 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.42 -1.266 0 O4'-C4'-C3' 103.828 -1.195 . 0.315 4d . 97.57 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.425 -0.956 0 O5'-C5'-C4' 114.073 2.766 . 0.0 OUTLIER . 123.38 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.875 0 P-O3'-C3' 122.836 2.613 . 0.0 OUTLIER . 107.13 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 11' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.855 0 N19-C1'-C2' 115.376 1.235 . 0.0 OUTLIER . 131.78 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 12' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.329 0 O4'-C1'-C2' 108.768 1.691 . 0.0 OUTLIER . 129.19 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 13' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.421 -1.211 0 P-O3'-C3' 121.437 1.447 . 0.561 1a . 96.8 . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 14' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.346 0 O4'-C4'-C3' 103.725 -1.268 . 0.0 OUTLIER . 111.95 . . . . . . . . . . 1 1 . 1 . 001 ecloud orig full ' B' B ' 101' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 102' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 103' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud orig full ' B' B ' 104' ' ' POH . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.421 -1.197 0 O4'-C1'-C2' 107.986 1.133 . 0.0 '__' . 97.81 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 2' ' ' ' G' . . . . . 0.453 " H4'" ' OP2' ' B' ' 3' ' ' ' C' . . . . . . . . 0 O5'--C5' 1.426 -0.876 0 O5'-C5'-C4' 113.247 2.176 . 0.423 5z . 66.62 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 3' ' ' ' C' . . . . . 0.453 ' OP2' " H4'" ' B' ' 2' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.42 -1.236 0 O5'-C5'-C4' 112.108 1.363 . 0.0 OUTLIER . 103.94 . . . . . . . . . . 2 2 . 1 . 001 ecloud build full ' B' B ' 4' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.042 0 O5'-C5'-C4' 112.049 1.321 . 0.0 OUTLIER . 166.81 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 5' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.315 0 O5'-C5'-C4' 111.787 1.133 . 0.0 OUTLIER alpha 93.44 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.392 0 O4'-C1'-N19 110.313 2.113 . 0.091 0i . 81.9 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 7' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.089 0 P-O3'-C3' 121.193 1.244 . 0.0 OUTLIER . 76.43 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.42 -1.266 0 O4'-C4'-C3' 103.828 -1.195 . 0.315 4d . 97.57 . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.425 -0.956 0 O5'-C5'-C4' 114.073 2.766 . 0.0 OUTLIER . 123.38 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.875 0 P-O3'-C3' 122.836 2.613 . 0.0 OUTLIER . 107.13 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 11' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.855 0 N19-C1'-C2' 115.376 1.235 . 0.0 OUTLIER . 131.78 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 12' ' ' ' G' . . . . . 0.454 " H2'" ' C8 ' ' B' ' 13' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.419 -1.329 0 O4'-C1'-C2' 108.768 1.691 . 0.0 OUTLIER . 129.19 . . . . . . . . . . 2 2 . 1 . 001 ecloud build full ' B' B ' 13' ' ' ' G' . . . . . 0.657 ' C2 ' ' H34' ' B' ' 104' ' ' POH . . . . . . . . 0 O5'--C5' 1.421 -1.211 0 P-O3'-C3' 121.437 1.447 . 0.561 1a . 96.8 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 14' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.346 0 O4'-C4'-C3' 103.725 -1.268 . 0.0 OUTLIER . 111.95 . . . . . . . . . . 1 1 . 1 . 001 ecloud build full ' B' B ' 101' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 102' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 103' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud build full ' B' B ' 104' ' ' POH . . . . . 0.657 ' H34' ' C2 ' ' B' ' 13' ' ' ' G' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.421 -1.197 0 O4'-C1'-C2' 107.986 1.133 . 0.0 '__' . 97.81 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 2' ' ' ' G' . . . . . 0.453 " H4'" ' OP2' ' B' ' 3' ' ' ' C' . . . . . . . . 0 O5'--C5' 1.426 -0.876 0 O5'-C5'-C4' 113.247 2.176 . 0.423 5z . 66.62 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 3' ' ' ' C' . . . . . 0.453 ' OP2' " H4'" ' B' ' 2' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.42 -1.236 0 O5'-C5'-C4' 112.108 1.363 . 0.0 OUTLIER . 103.94 . . . . . . . . . . 2 2 . 1 . 001 ecloud nobuild full ' B' B ' 4' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.042 0 O5'-C5'-C4' 112.049 1.321 . 0.0 OUTLIER . 166.81 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 5' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.419 -1.315 0 O5'-C5'-C4' 111.787 1.133 . 0.0 OUTLIER alpha 93.44 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 6' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.392 0 O4'-C1'-N19 110.313 2.113 . 0.091 0i . 81.9 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 7' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.423 -1.089 0 P-O3'-C3' 121.193 1.244 . 0.0 OUTLIER . 76.43 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 8' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.42 -1.266 0 O4'-C4'-C3' 103.828 -1.195 . 0.315 4d . 97.57 . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 9' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.425 -0.956 0 O5'-C5'-C4' 114.073 2.766 . 0.0 OUTLIER . 123.38 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 10' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.875 0 P-O3'-C3' 122.836 2.613 . 0.0 OUTLIER . 107.13 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 11' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.426 -0.855 0 N19-C1'-C2' 115.376 1.235 . 0.0 OUTLIER . 131.78 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 12' ' ' ' G' . . . . . 0.454 " H2'" ' C8 ' ' B' ' 13' ' ' ' G' . . . . . . . . 0 O5'--C5' 1.419 -1.329 0 O4'-C1'-C2' 108.768 1.691 . 0.0 OUTLIER . 129.19 . . . . . . . . . . 2 2 . 1 . 001 ecloud nobuild full ' B' B ' 13' ' ' ' G' . . . . . 0.657 ' C2 ' ' H34' ' B' ' 104' ' ' POH . . . . . . . . 0 O5'--C5' 1.421 -1.211 0 P-O3'-C3' 121.437 1.447 . 0.561 1a . 96.8 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 14' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O5'--C5' 1.418 -1.346 0 O4'-C4'-C3' 103.725 -1.268 . 0.0 OUTLIER . 111.95 . . . . . . . . . . 1 1 . 1 . 001 ecloud nobuild full ' B' B ' 101' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 102' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 103' ' ' ' K' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0 0 . 1 . 001 ecloud nobuild full ' B' B ' 104' ' ' POH . . . . . 0.657 ' H34' ' C2 ' ' B' ' 13' ' ' ' G' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 1 . 1 stop_ save_