data_1j4y_residue save_MolProbity _Software.Sf_category software _Software.Sf_framecode MolProbity _Software.Entry_ID ? _Software.ID 1 _Software.Name MolProbity _Software.Version 4.0 _Software.Details . save_ save_CYRANGE _Software.Sf_category software _Software.Sf_framecode CYRANGE _Software.Entry_ID ? _Software.ID 2 _Software.Name CYRANGE _Software.Version 2.0 _Software.Details . save_ save_Structure_validation_residue _Structure_validation_residue.Sf_category structure_validation _Structure_validation_residue.Sf_framecode Structure_validation_residue _Structure_validation_residue.Entry_ID ? _Structure_validation_residue.List_ID 1 _Structure_validation_residue.PDB_accession_code 1j4y _Structure_validation_residue.Date_analyzed 2016-10-06 loop_ _Residue_analysis_software.Software_ID _Residue_analysis_software.Software_label _Residue_analysis_software.Method_ID _Residue_analysis_software.Method_label _Residue_analysis_software.Entry_ID _Residue_analysis_software.Structure_validation_oneline_list_ID 1 MolProbity . . ? 1 2 CYRANGE . . ? 1 stop_ loop_ _Residue_analysis.ID _Residue_analysis.PDB_model_num _Residue_analysis.Hydrogen_positions _Residue_analysis.MolProbity_flips _Residue_analysis.Cyrange_core_flag _Residue_analysis.Two_letter_chain_ID _Residue_analysis.PDB_strand_ID _Residue_analysis.PDB_residue_no _Residue_analysis.PDB_ins_code _Residue_analysis.PDB_residue_name _Residue_analysis.Assembly_ID _Residue_analysis.Entity_assembly_ID _Residue_analysis.Entity_ID _Residue_analysis.Comp_ID _Residue_analysis.Comp_index_ID _Residue_analysis.Clash_value _Residue_analysis.Clash_source_PDB_atom_name _Residue_analysis.Clash_destination_PDB_atom_name _Residue_analysis.Clash_destination_PDB_strand_ID _Residue_analysis.Clash_destination_PDB_residue_no _Residue_analysis.Clash_destination_PDB_ins_code _Residue_analysis.Clash_destination_PDB_residue_name _Residue_analysis.Cbeta_deviation_value _Residue_analysis.Rotamer_score _Residue_analysis.Rotamer_name _Residue_analysis.Ramachandran_phi _Residue_analysis.Ramachandran_psi _Residue_analysis.Ramachandran_score _Residue_analysis.Ramachandran_evaluation _Residue_analysis.Ramachandran_type _Residue_analysis.Bond_outlier_count _Residue_analysis.Worst_bond _Residue_analysis.Worst_bond_value _Residue_analysis.Worst_bond_sigma _Residue_analysis.Angle_outlier_count _Residue_analysis.Worst_angle _Residue_analysis.Worst_angle_value _Residue_analysis.Worst_angle_sigma _Residue_analysis.RNA_phosphate_perpendicular_outlier _Residue_analysis.RNA_suitness_score _Residue_analysis.RNA_suite_conformer _Residue_analysis.RNA_suite_triage _Residue_analysis.Max_b_factor _Residue_analysis.Tau_angle _Residue_analysis.Omega_dihedral _Residue_analysis.Disulfide_chi1 _Residue_analysis.Disulfide_chi2 _Residue_analysis.Disulfide_chi3 _Residue_analysis.Disulfide_ss_angle _Residue_analysis.Disulfide_ss _Residue_analysis.Disulfide_ss_angle_prime _Residue_analysis.Disulfide_chi2prime _Residue_analysis.Disulfide_chi1prime _Residue_analysis.Outlier_count_separate_geometry _Residue_analysis.Outlier_count _Residue_analysis.Entry_ID _Residue_analysis.Structure_validation_residue_list_ID . 001 nuclear orig full ' A' A ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.429 -1.96 1 C3'-C2'-C1' 105.788 4.765 OUTLIER-DELTA 0.0 '__' . 6.1699999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 2' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.856 0 O4'-C1'-N19 111.129 2.929 . 0.0 OUTLIER delta-1 3.7200000000000002 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.935 0 O4'-C1'-N19 111.267 3.067 . 0.39 1a . 2.29 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.886 0 O4'-C1'-N19 111.178 2.978 . 0.419 1c . 1.6399999999999999 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 5' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.612 1.867 0 O4'-C1'-N19 111.131 2.931 . 0.173 1c . 1.8 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 6' ' ' ' U' . . . . . 0.582 " O2'" " H5'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.613 1.992 0 C3'-C2'-C1' 104.554 3.393 . 0.0 OUTLIER '7D dist 1c' 1.5800000000000001 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 7' ' ' ' U' . . . . . 0.582 " H5'" " O2'" ' A' ' 6' ' ' ' U' . . . . . . . . 0 P--O5' 1.612 1.927 1 C3'-C2'-C1' 105.686 4.651 . 0.035 1a . 1.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 8' ' ' ' G' . . . . . 0.489 " O4'" " H2'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.614 2.057 0 C1'-O4'-C4' 112.261 2.956 . 0.0 OUTLIER gamma 2.2000000000000002 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 9' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.426 -2.258 0 O4'-C1'-N19 111.093 2.893 . 0.0 OUTLIER gamma 2.3100000000000001 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 10' ' ' ' A' . . . . . 0.53 " H1'" " O4'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.874 0 C4'-C3'-O3' 103.202 -2.845 . 0.0 OUTLIER . 2.0699999999999998 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 11' ' ' ' A' . . . . . 0.535 " O2'" ' C8 ' ' A' ' 12' ' ' ' A' . . . . . . . . 0 P--O5' 1.61 1.727 0 O4'-C1'-N19 111.614 3.414 . 0.0 OUTLIER . 2.6499999999999999 . . . . . . . . . . 2 2 . 1 . 001 nuclear orig full ' A' A ' 12' ' ' ' A' . . . . . 0.535 ' C8 ' " O2'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.816 0 O4'-C1'-N19 111.253 3.053 . 0.281 4n . 2.29 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 13' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.438 1.993 0 O4'-C1'-N19 111.375 3.175 . 0.409 1L . 2.4199999999999999 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 14' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.83 0 O4'-C1'-N19 111.156 2.956 . 0.071 1a . 2.98 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.613 2.01 0 C5'-C4'-C3' 111.136 -2.909 . 0.057 1a . 3.1499999999999999 . . . . . . . . . . 0 0 . 1 . 001 nuclear orig full ' A' A ' 16' ' ' ' C' . . . . . 0.687 " H2'" " O4'" ' A' ' 17' ' ' ' C' . . . . . . . . 0 O4'--C1' 1.439 2.101 0 O4'-C1'-N19 111.17 2.97 . 0.326 1a . 3.4199999999999999 . . . . . . . . . . 1 1 . 1 . 001 nuclear orig full ' A' A ' 17' ' ' ' C' . . . . . 0.687 " O4'" " H2'" ' A' ' 16' ' ' ' C' . . . . . . . . 0 P--O5' 1.617 2.364 1 C1'-O4'-C4' 113.206 4.007 . 0.0 OUTLIER . 5.5700000000000003 . . . . . . . . . . 3 3 . 1 . 001 nuclear build full ' A' A ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.429 -1.96 1 C3'-C2'-C1' 105.788 4.765 OUTLIER-DELTA 0.0 '__' . 5.98 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 2' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.856 0 O4'-C1'-N19 111.129 2.929 . 0.0 OUTLIER delta-1 3.72 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.935 0 O4'-C1'-N19 111.267 3.067 . 0.39 1a . 2.29 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.886 0 O4'-C1'-N19 111.178 2.978 . 0.419 1c . 1.64 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 5' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.612 1.867 0 O4'-C1'-N19 111.131 2.931 . 0.173 1c . 1.8 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 6' ' ' ' U' . . . . . 0.576 " O2'" " H5'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.613 1.992 0 C3'-C2'-C1' 104.554 3.393 . 0.0 OUTLIER '7D dist 1c' 1.58 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 7' ' ' ' U' . . . . . 0.576 " H5'" " O2'" ' A' ' 6' ' ' ' U' . . . . . . . . 0 P--O5' 1.612 1.927 1 C3'-C2'-C1' 105.686 4.651 . 0.035 1a . 1.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 8' ' ' ' G' . . . . . 0.525 " O4'" " H2'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.614 2.057 0 C1'-O4'-C4' 112.261 2.956 . 0.0 OUTLIER gamma 2.06 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 9' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.426 -2.258 0 O4'-C1'-N19 111.093 2.893 . 0.0 OUTLIER gamma 2.15 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 10' ' ' ' A' . . . . . 0.538 " H1'" " O4'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.874 0 C4'-C3'-O3' 103.202 -2.845 . 0.0 OUTLIER . 2.07 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 11' ' ' ' A' . . . . . 0.538 " O4'" " H1'" ' A' ' 10' ' ' ' A' . . . . . . . . 0 P--O5' 1.61 1.727 0 O4'-C1'-N19 111.614 3.414 . 0.0 OUTLIER . 2.65 . . . . . . . . . . 2 2 . 1 . 001 nuclear build full ' A' A ' 12' ' ' ' A' . . . . . 0.535 ' C8 ' " O2'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.816 0 O4'-C1'-N19 111.253 3.053 . 0.281 4n . 2.29 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 13' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.438 1.993 0 O4'-C1'-N19 111.375 3.175 . 0.409 1L . 1.96 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 14' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.83 0 O4'-C1'-N19 111.156 2.956 . 0.071 1a . 2.98 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.613 2.01 0 C5'-C4'-C3' 111.136 -2.909 . 0.057 1a . 3.15 . . . . . . . . . . 0 0 . 1 . 001 nuclear build full ' A' A ' 16' ' ' ' C' . . . . . 0.776 " H2'" " O4'" ' A' ' 17' ' ' ' C' . . . . . . . . 0 O4'--C1' 1.439 2.101 0 O4'-C1'-N19 111.17 2.97 . 0.326 1a . 3.18 . . . . . . . . . . 1 1 . 1 . 001 nuclear build full ' A' A ' 17' ' ' ' C' . . . . . 0.776 " O4'" " H2'" ' A' ' 16' ' ' ' C' . . . . . . . . 0 P--O5' 1.617 2.364 1 C1'-O4'-C4' 113.206 4.007 . 0.0 OUTLIER . 5.32 . . . . . . . . . . 3 3 . 1 . 001 nuclear nobuild full ' A' A ' 1' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.429 -1.96 1 C3'-C2'-C1' 105.788 4.765 OUTLIER-DELTA 0.0 '__' . 5.98 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 2' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.856 0 O4'-C1'-N19 111.129 2.929 . 0.0 OUTLIER delta-1 3.72 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 3' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.935 0 O4'-C1'-N19 111.267 3.067 . 0.39 1a . 2.29 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 4' ' ' ' G' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.43 -1.886 0 O4'-C1'-N19 111.178 2.978 . 0.419 1c . 1.64 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 5' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.612 1.867 0 O4'-C1'-N19 111.131 2.931 . 0.173 1c . 1.8 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 6' ' ' ' U' . . . . . 0.576 " O2'" " H5'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.613 1.992 0 C3'-C2'-C1' 104.554 3.393 . 0.0 OUTLIER '7D dist 1c' 1.58 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 7' ' ' ' U' . . . . . 0.576 " H5'" " O2'" ' A' ' 6' ' ' ' U' . . . . . . . . 0 P--O5' 1.612 1.927 1 C3'-C2'-C1' 105.686 4.651 . 0.035 1a . 1.29 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 8' ' ' ' G' . . . . . 0.525 " O4'" " H2'" ' A' ' 7' ' ' ' U' . . . . . . . . 0 P--O5' 1.614 2.057 0 C1'-O4'-C4' 112.261 2.956 . 0.0 OUTLIER gamma 2.06 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 9' ' ' ' A' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.426 -2.258 0 O4'-C1'-N19 111.093 2.893 . 0.0 OUTLIER gamma 2.15 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 10' ' ' ' A' . . . . . 0.538 " H1'" " O4'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.874 0 C4'-C3'-O3' 103.202 -2.845 . 0.0 OUTLIER . 2.07 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 11' ' ' ' A' . . . . . 0.538 " O4'" " H1'" ' A' ' 10' ' ' ' A' . . . . . . . . 0 P--O5' 1.61 1.727 0 O4'-C1'-N19 111.614 3.414 . 0.0 OUTLIER . 2.65 . . . . . . . . . . 2 2 . 1 . 001 nuclear nobuild full ' A' A ' 12' ' ' ' A' . . . . . 0.535 ' C8 ' " O2'" ' A' ' 11' ' ' ' A' . . . . . . . . 0 O4'--C4' 1.431 -1.816 0 O4'-C1'-N19 111.253 3.053 . 0.281 4n . 2.29 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 13' ' ' ' U' . . . . . . . . . . . . . . . . . . . . 0 O4'--C1' 1.438 1.993 0 O4'-C1'-N19 111.375 3.175 . 0.409 1L . 1.96 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 14' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 O4'--C4' 1.431 -1.83 0 O4'-C1'-N19 111.156 2.956 . 0.071 1a . 2.98 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 15' ' ' ' C' . . . . . . . . . . . . . . . . . . . . 0 P--O5' 1.613 2.01 0 C5'-C4'-C3' 111.136 -2.909 . 0.057 1a . 3.15 . . . . . . . . . . 0 0 . 1 . 001 nuclear nobuild full ' A' A ' 16' ' ' ' C' . . . . . 0.776 " H2'" " O4'" ' A' ' 17' ' ' ' C' . . . . . . . . 0 O4'--C1' 1.439 2.101 0 O4'-C1'-N19 111.17 2.97 . 0.326 1a . 3.18 . . . . . . . . . . 1 1 . 1 . 001 nuclear nobuild full ' A' A ' 17' ' ' ' C' . . . . . 0.776 " O4'" " H2'" ' A' ' 16' ' ' ' C' . . . . . . . . 0 P--O5' 1.617 2.364 1 C1'-O4'-C4' 113.206 4.007 . 0.0 OUTLIER . 5.32 . . . . . . . . . . 3 3 . 1 stop_ save_