data_bmse000871 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000871 _Entry.Title gamma-Aminobutyric _Entry.Version_type update _Entry.Submission_date 2011-11-08 _Entry.Accession_date 2011-11-16 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2011-11-16 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.21 _Entry.Original_NMR_STAR_version 3.1.1.7 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE000871 _Entry.BMRB_internal_directory_name gamma_Aminobutyric_acid loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Entry_ID 1 Francisca Jofre F. ? bmse000871 2 Mark Anderson M. E. bmse000871 3 John Markley J. L. bmse000871 4 Melanie Ulrich M. E. bmse000871 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics 'National Magnetic Facility at Madison' NMRFAM bmse000871 2 metabolomics 'Biological Magnetic Resonance Bank' BMRB bmse000871 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000871 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 4 bmse000871 '1H chemical shifts' 6 bmse000871 stop_ loop_ _Release.Release_number _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 2011-11-16 2011-11-08 original BMRB 'Original spectra from MMC' bmse000871 2 2011-12-14 2011-11-08 update BMRB 'Set Assembly.Name to match Chem_comp.name' bmse000871 3 2012-09-13 2011-11-08 update BMRB 'Added PubChem SID 134228438 to database loop' bmse000871 4 2012-10-12 2011-11-08 update BMRB 'Set assigned_chemical_shifts with data from bmse000340' bmse000871 5 2012-10-17 2011-11-08 update BMRB 'Set all _Chem_comp_SMILES Types to lower case' bmse000871 6 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse000871 7 2017-12-19 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse000871 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000871 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title 'Database resources of the National Center for Biotechnology Information.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. bmse000871 1 2 T. Barrett T. ? bmse000871 1 3 D. Benson D. A. bmse000871 1 4 S. Bryant S. H. bmse000871 1 5 K. Canese K. ? bmse000871 1 6 V. Chetvenin V. ? bmse000871 1 7 D. Church D. M. bmse000871 1 8 M. DiCuccio M. ? bmse000871 1 9 R. Edgar R. ? bmse000871 1 10 S. Federhen S. ? bmse000871 1 11 L. Geer L. Y. bmse000871 1 12 W. Helmberg W. ? bmse000871 1 13 Y. Kapustin Y. ? bmse000871 1 14 D. Kenton D. L. bmse000871 1 15 O. Khovayko O. ? bmse000871 1 16 D. Lipman D. J. bmse000871 1 17 T. Madden T. L. bmse000871 1 18 D. Maglott D. R. bmse000871 1 19 J. Ostell J. ? bmse000871 1 20 K. Pruitt K. D. bmse000871 1 21 G. Schuler G. D. bmse000871 1 22 L. Schriml L. M. bmse000871 1 23 E. Sequeira E. ? bmse000871 1 24 S. Sherry S. T. bmse000871 1 25 K. Sirotkin K. ? bmse000871 1 26 A. Souvorov A. ? bmse000871 1 27 G. Starchenko G. ? bmse000871 1 28 T. Suzek T. O. bmse000871 1 29 R. Tatusov R. ? bmse000871 1 30 T. Tatusova T. A. bmse000871 1 31 L. Bagner L. ? bmse000871 1 32 E. Yaschenko E. ? bmse000871 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000871 _Assembly.ID 1 _Assembly.Name 'gamma-Aminobutyric acid' _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 gamma-Aminobutyric 1 $gamma-Aminobutyric yes native no no bmse000871 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_gamma-Aminobutyric _Entity.Sf_category entity _Entity.Sf_framecode gamma-Aminobutyric _Entity.Entry_ID bmse000871 _Entity.ID 1 _Entity.Name 'gamma-Aminobutyric acid' _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000871 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000871 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $gamma-Aminobutyric n/a 'multiple natural sources' yes 'not applicable' n/a n/a n/a n/a n/a bmse000871 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000871 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Production_method _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $gamma-Aminobutyric 'chemical synthesis' bmse000871 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000871 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name 'gamma-Aminobutyric acid' _Chem_comp.Type non-polymer _Chem_comp.BMRB_code bmse000340 _Chem_comp.InChI_code InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7) _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C4 H9 N O2' _Chem_comp.Formula_weight 103.11976 _Chem_comp.Formula_mono_iso_wt_nat 103.0633285383 _Chem_comp.Formula_mono_iso_wt_13C 107.0767478895 _Chem_comp.Formula_mono_iso_wt_15N 104.0603634315 _Chem_comp.Formula_mono_iso_wt_13C_15N 108.0737827827 _Chem_comp.Image_file_name bmse000871.png _Chem_comp.Image_file_format png _Chem_comp.Struct_file_name bmse000871.mol _Chem_comp.Struct_file_format mol loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID Gammasol synonym bmse000871 1 '4-aminobutanoic acid' synonym bmse000871 1 'Aminobutyric acid' synonym bmse000871 1 4-aminobutanoate synonym bmse000871 1 'Butanoic acid, 4-amino- (9CI)' synonym bmse000871 1 gamma-aminobutyrate synonym bmse000871 1 'Butyric acid, 4-amino- (7CI,8CI)' synonym bmse000871 1 'Butanoic acid, amino-' synonym bmse000871 1 'Gamma(Amino)-Butyric Acid' synonym bmse000871 1 Gamarex synonym bmse000871 1 Aminalon synonym bmse000871 1 Gaballon synonym bmse000871 1 4-Aminobutyrate synonym bmse000871 1 'Piperidinic acid' synonym bmse000871 1 GABA synonym bmse000871 1 'gamma-Aminobutryic acid' synonym bmse000871 1 'Aminobutanoic acid' synonym bmse000871 1 'gamma-Aminobutyric acid' synonym bmse000871 1 3-Carboxypropylamine synonym bmse000871 1 4-NH2-but synonym bmse000871 1 'Butyric acid, 4-amino-' synonym bmse000871 1 Mielomade synonym bmse000871 1 Gammalone synonym bmse000871 1 '4-Aminobutanoic acid' synonym bmse000871 1 '4-Aminobutyric acid' synonym bmse000871 1 4-Aminobutylate synonym bmse000871 1 Immu-G synonym bmse000871 1 Reanal synonym bmse000871 1 4-AMINO-BUTYRATE synonym bmse000871 1 'gamma-Aminobutanoic acid' synonym bmse000871 1 'gamma-Aminobutyric acid (JAN)' synonym bmse000871 1 gamma-Aminobuttersaeure synonym bmse000871 1 'piperidic acid' synonym bmse000871 1 4-NH3-but synonym bmse000871 1 4-Aminobutanoate synonym bmse000871 1 'gamma-aminobutyric acid' synonym bmse000871 1 'gamma-amino-n-butyric acid' synonym bmse000871 1 'gamma-aminobutanoic acid' synonym bmse000871 1 4-aminobutyrate synonym bmse000871 1 Mielogen synonym bmse000871 1 Gammar synonym bmse000871 1 'BUTANOIC ACID,4-AMINO' synonym bmse000871 1 'omega-Aminobutyric acid' synonym bmse000871 1 '.gamma.-Aminobutyric acid' synonym bmse000871 1 'Butanoic acid, 4-amino-' synonym bmse000871 1 '4-aminobutyric acid' synonym bmse000871 1 'Piperidic acid' synonym bmse000871 1 Gammalon synonym bmse000871 1 '4-amino-n-butyric acid' synonym bmse000871 1 'butanoic acid, 4-amino-' synonym bmse000871 1 '4-amino-butanoic acid' synonym bmse000871 1 'GAMMA-AMINO-BUTANOIC ACID' synonym bmse000871 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7) INCHI na na bmse000871 1 InChI=1S/C4H9NO2/c5-3-1-2-4(6)7/h1-3,5H2,(H,6,7) INCHI ALATIS 3.003 bmse000871 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID '4-aminobutanoic acid' PUBCHEM_IUPAC_NAME bmse000871 1 '4-aminobutyric acid' PUBCHEM_IUPAC_TRADITIONAL_NAME bmse000871 1 '4-aminobutanoic acid' PUBCHEM_IUPAC_OPENEYE_NAME bmse000871 1 '4-aminobutanoic acid' PUBCHEM_IUPAC_CAS_NAME bmse000871 1 '4-aminobutanoic acid' PUBCHEM_IUPAC_SYSTEMATIC_NAME bmse000871 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID canonical C(CC(=O)O)CN bmse000871 1 isomeric C(CC(=O)O)CN bmse000871 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID O6 O 2.5369 0.7500 1 bmse000871 1 O7 O 3.4030 -0.7500 2 bmse000871 1 N5 N 6.8671 0.2500 3 bmse000871 1 C1 C 5.1350 0.2500 4 bmse000871 1 C2 C 4.2690 0.7500 5 bmse000871 1 C3 C 6.0010 0.7500 6 bmse000871 1 C4 C 3.4030 0.2500 7 bmse000871 1 H8 H 4.7365 -0.2249 8 bmse000871 1 H9 H 5.5335 -0.2249 9 bmse000871 1 H10 H 4.6675 1.2249 10 bmse000871 1 H11 H 3.8705 1.2249 11 bmse000871 1 H12 H 6.3996 1.2249 12 bmse000871 1 H13 H 5.6025 1.2249 13 bmse000871 1 H14 H 7.4040 0.5600 14 bmse000871 1 H15 H 6.8671 -0.3700 15 bmse000871 1 H16 H 2.0000 0.4400 16 bmse000871 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID O6 O1 BMRB bmse000871 1 O7 O2 BMRB bmse000871 1 N5 N3 BMRB bmse000871 1 C1 C4 BMRB bmse000871 1 C2 C5 BMRB bmse000871 1 C3 C6 BMRB bmse000871 1 C4 C7 BMRB bmse000871 1 H8 H8 BMRB bmse000871 1 H9 H9 BMRB bmse000871 1 H10 H10 BMRB bmse000871 1 H11 H11 BMRB bmse000871 1 H12 H12 BMRB bmse000871 1 H13 H13 BMRB bmse000871 1 H14 H14 BMRB bmse000871 1 H15 H15 BMRB bmse000871 1 H16 H16 BMRB bmse000871 1 O6 O6 ALATIS bmse000871 1 O7 O7 ALATIS bmse000871 1 N5 N5 ALATIS bmse000871 1 C1 C1 ALATIS bmse000871 1 C2 C2 ALATIS bmse000871 1 C3 C3 ALATIS bmse000871 1 C4 C4 ALATIS bmse000871 1 H8 H8 ALATIS bmse000871 1 H9 H9 ALATIS bmse000871 1 H10 H10 ALATIS bmse000871 1 H11 H11 ALATIS bmse000871 1 H12 H12 ALATIS bmse000871 1 H13 H13 ALATIS bmse000871 1 H14 H14 ALATIS bmse000871 1 H15 H15 ALATIS bmse000871 1 H16 H16 ALATIS bmse000871 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING O6 C4 bmse000871 1 2 covalent SING O6 H16 bmse000871 1 3 covalent DOUB O7 C4 bmse000871 1 4 covalent SING N5 C3 bmse000871 1 5 covalent SING N5 H14 bmse000871 1 6 covalent SING N5 H15 bmse000871 1 7 covalent SING C1 C2 bmse000871 1 8 covalent SING C1 C3 bmse000871 1 9 covalent SING C1 H8 bmse000871 1 10 covalent SING C1 H9 bmse000871 1 11 covalent SING C2 C4 bmse000871 1 12 covalent SING C2 H10 bmse000871 1 13 covalent SING C2 H11 bmse000871 1 14 covalent SING C3 H12 bmse000871 1 15 covalent SING C3 H13 bmse000871 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 134228438 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 119 cid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 10527343 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 8145275 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 5006226 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 7989498 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 11113457 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 41742132 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 7847126 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 11491200 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 24701168 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 841798 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 2023 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 3628 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 710516 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 588080 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 24891025 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PubChem 29209105 sid 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no 'CAS Registry' 28805-76-7 'registry number' 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no 'CAS Registry' 56-12-2 'registry number' 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no Sigma-Aldrich A5835_SIGMA ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no ChEBI CHEBI:16865 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no ChemIDplus 028805767 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no ChemSpider 16205468 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no BIND 1855 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no CCRIS 3721 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no NMRShiftDB 10008874 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no 'EPA Pesticide Chemical Code' 030802 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no 'CambridgeSoft Corporation' 432 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no LipidMAPS LMFA01100039 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no DrugBank EXPT00402 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no KEGG D00058 'compound ID' 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no NCGC NCGC00024546-01 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no ChemDB 3966749 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no 'NIST Chemistry WebBook' 624163905 ? 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 no PDB ABU 'Chemical Component' 'gamma-Aminobutyric acid' 'matching entry' bmse000871 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000871 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000871 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_units _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Entry_ID _Sample_component.Sample_ID 1 'gamma-Aminobutyric acid' 'natural abundance' 1 $gamma-Aminobutyric Solute 100 mM sigma 'gamma-Aminobutyric acid' bmse000871 1 2 D2O ? ? ? Solvent 100 % ? ? bmse000871 1 3 'sodium phosphate' ? ? ? Buffer 50 mM ? ? bmse000871 1 4 'sodium azide' ? ? ? Cytocide 500 uM ? ? bmse000871 1 5 DSS ? ? ? Reference 1 % ? ? bmse000871 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000871 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 pH bmse000871 1 temperature 298 K bmse000871 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000871 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' bmse000871 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000871 1 Processing bmse000871 1 'Data analysis' bmse000871 1 'Peak picking' bmse000871 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_DMX_600 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_600 _NMR_spectrometer.Entry_ID bmse000871 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 600 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000871 _Experiment_list.ID 1 loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 2 '2D [1H,1H]-TOCSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 3 '1D DEPT90' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 4 '1D DEPT135' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 5 '2D [1H,13C]-HSQC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 6 '2D [1H,13C]-HMBC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 7 '2D [1H,1H]-COSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000871 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Directory_path _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 1H text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 1 00.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000871 1 1 01.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000871 1 2 HH_TOCSY text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 2 00.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000871 1 2 01.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000871 1 3 DEPT_90 text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 4 DEPT_135 text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 4 00.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000871 1 4 01.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000871 1 5 1H_13C_HSQC text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 5 00.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000871 1 5 01.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000871 1 6 1H_13C_HMBC text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 6 00.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000871 1 6 01.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000871 1 7 HH_COSY text/directory nmr/set01/ 'NMR experiment directory' bmse000871 1 7 00.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000871 1 7 01.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000871 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000871 _Chem_shift_reference.ID 1 loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS 'methyl protons' ppm 0.00 internal direct 1.000000000 bmse000871 1 C 13 DSS 'methyl carbons' ppm 0.00 internal direct 1.000000000 bmse000871 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000871 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference _Assigned_chem_shift_list.Details 'The chemical shift assignments have been taken from BMRB entry bmse000340' loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C1 C 13 26.393 1 C4 bmse000871 1 2 1 1 1 C2 C 13 37.13 1 C5 bmse000871 1 3 1 1 1 C3 C 13 42.005 1 C6 bmse000871 1 4 1 1 1 C4 C 13 184.37 1 C7 bmse000871 1 5 1 1 1 H8 H 1 1.893 1 H8 bmse000871 1 6 1 1 1 H9 H 1 1.893 1 H9 bmse000871 1 7 1 1 1 H10 H 1 2.286 1 H10 bmse000871 1 8 1 1 1 H11 H 1 2.286 1 H11 bmse000871 1 9 1 1 1 H12 H 1 2.998 1 H12 bmse000871 1 10 1 1 1 H13 H 1 2.998 1 H13 bmse000871 1 stop_ save_ ######################### # Spectral peak lists # ######################### save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000871 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 'Full H' 9615.38461538462 bmse000871 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000871 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse000871 1 2 bmse000871 1 3 bmse000871 1 4 bmse000871 1 5 bmse000871 1 6 bmse000871 1 7 bmse000871 1 8 bmse000871 1 9 bmse000871 1 10 bmse000871 1 11 bmse000871 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 7.36 Height bmse000871 1 2 8.82 Height bmse000871 1 3 7.63 Height bmse000871 1 4 7.39 Height bmse000871 1 5 15.00 Height bmse000871 1 6 8.37 Height bmse000871 1 7 2.03 Height bmse000871 1 8 5.97 Height bmse000871 1 9 7.82 Height bmse000871 1 10 5.58 Height bmse000871 1 11 1.75 Height bmse000871 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 3.0099 bmse000871 1 2 1 2.9972 bmse000871 1 3 1 2.9845 bmse000871 1 4 1 2.2984 bmse000871 1 5 1 2.2861 bmse000871 1 6 1 2.2738 bmse000871 1 7 1 1.9177 bmse000871 1 8 1 1.9053 bmse000871 1 9 1 1.8926 bmse000871 1 10 1 1.8801 bmse000871 1 11 1 1.8677 bmse000871 1 stop_ save_