data_bmse010511 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse010511 _Entry.Title lignin_cw_compound_3054 _Entry.Version_type update _Entry.Submission_date 2009-05-26 _Entry.Accession_date 2013-01-09 _Entry.Last_release_date 2013-04-05 _Entry.Original_release_date 2013-01-17 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.31 _Entry.Original_NMR_STAR_version 3.1.0.46 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE010511 _Entry.Details ? _Entry.BMRB_internal_directory_name lignin_cw_compound_3054 loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 John Ralph ? ? bmse010511 2 Sally Ralph ? ? bmse010511 3 Hoon Kim ? ? bmse010511 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 'NMR Database of Lignin and Cell Wall Model Compounds' 'United States Department of Agriculture' USDA bmse010511 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse010511 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 27 bmse010511 '1H chemical shifts' 29 bmse010511 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2013-01-17 2009-05-26 original BMRB 'Original spectra from MMC' bmse010511 2 . . 2013-04-05 2009-05-26 update BMRB 'Adding molecule category to chem_comp Details' bmse010511 3 . . 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse010511 4 . . 2018-07-10 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse010511 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse010511 _Citation.ID 1 _Citation.Class 'entry citation' _Citation.PubMed_ID ? _Citation.Title 'NMR Database of Lignin and Cell Wall Model Compounds.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://ars.usda.gov/Services/docs.htm?docid=10491 _Citation.Year 2004 _Citation.Details ? loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Sally Ralph ? A. ? bmse010511 1 2 John Ralph ? ? ? bmse010511 1 3 Larry Landucci ? L. ? bmse010511 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse010511 _Assembly.ID 1 _Assembly.Name lignin_cw_compound_3054 _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Metal_ions ? _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 lignin_cw_compound_3054 1 $lignin_cw_compound_3054 yes native no no ? ? ? bmse010511 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_lignin_cw_compound_3054 _Entity.Sf_category entity _Entity.Sf_framecode lignin_cw_compound_3054 _Entity.Entry_ID bmse010511 _Entity.ID 1 _Entity.BMRB_code ? _Entity.Name lignin_cw_compound_3054 _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse010511 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse010511 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $lignin_cw_compound_3054 . n/a 'multiple natural sources' yes 'not applicable' n/a . . Eukaryota Viridiplantae n/a n/a . . . . . . . . . . . . . . . . . . . . . bmse010511 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse010511 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $lignin_cw_compound_3054 . 'chemical synthesis' . . . . . . . . . . . . . . . . . . . . . . . . . . . . . bmse010511 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse010511 _Chem_comp.ID 1 _Chem_comp.Provenance BMRB _Chem_comp.Name lignin_cw_compound_3054 _Chem_comp.Type non-polymer _Chem_comp.BMRB_code bmse010511 _Chem_comp.PDB_code ? _Chem_comp.InChI_code InChI=1S/C27H30O8/c1-5-33-27(29)26(35-21-14-10-9-13-20(21)30-2)24(28)19-15-22(31-3)25(23(16-19)32-4)34-17-18-11-7-6-8-12-18/h6-16,24,26,28H,5,17H2,1-4H3/t24-,26+/m1/s1 _Chem_comp.Mon_nstd_flag ? _Chem_comp.Std_deriv_one_letter_code ? _Chem_comp.Std_deriv_three_letter_code ? _Chem_comp.Std_deriv_BMRB_code ? _Chem_comp.Std_deriv_PDB_code ? _Chem_comp.Formal_charge ? _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula 'C27 H30 O8' _Chem_comp.Formula_weight 482.5223 _Chem_comp.Formula_mono_iso_wt_nat 482.1940679398 _Chem_comp.Formula_mono_iso_wt_13C 509.2846485604 _Chem_comp.Formula_mono_iso_wt_15N 482.1940679398 _Chem_comp.Formula_mono_iso_wt_13C_15N 509.2846485604 _Chem_comp.Image_file_name bmse010511.png _Chem_comp.Image_file_format png _Chem_comp.Topo_file_name ? _Chem_comp.Topo_file_format ? _Chem_comp.Struct_file_name bmse010511.mol _Chem_comp.Struct_file_format mol _Chem_comp.Stereochem_param_file_name ? _Chem_comp.Details 'b-O-4 Dimers, 3-Carbon Sidechain' _Chem_comp.DB_query_date ? _Chem_comp.DB_last_query_revised_last_date ? loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID Unnamed synonym bmse010511 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID ; InChI=1/C27H30O8/c1-5-33-27(29)26(35-21-14-10-9-13-20(21)30-2)24(28)19-15-22(31-3)25(23(16-19)32-4)34-17-18-11-7-6-8-12-18/h6-16,24,26,28H,5,17H2,1-4H3 ; INCHI na na bmse010511 1 InChI=1S/C27H30O8/c1-5-33-27(29)26(35-21-14-10-9-13-20(21)30-2)24(28)19-15-22(31-3)25(23(16-19)32-4)34-17-18-11-7-6-8-12-18/h6-16,24,26,28H,5,17H2,1-4H3/t24-,26+/m1/s1 INCHI ALATIS 3.003 bmse010511 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID Canonical CCOC(C(C(C1=CC(=C(C(=C1)OC)OCC2=CC=CC=C2)OC)O)OC3=CC=CC=C3OC)=O bmse010511 1 Isomeric CCOC(C(C(C1=CC(=C(C(=C1)OC)OCC2=CC=CC=C2)OC)O)OC3=CC=CC=C3OC)=O bmse010511 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Auth_atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Stereo_config _Chem_comp_atom.Charge _Chem_comp_atom.Oxidation_number _Chem_comp_atom.Unpaired_electron_number _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.Model_Cartn_x _Chem_comp_atom.Model_Cartn_y _Chem_comp_atom.Model_Cartn_z _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID C1 ? C ? ? ? ? 171.0770 130.0000 ? ? ? 1 bmse010511 1 C2 ? C ? ? ? ? 275.0000 10.0000 ? ? ? 2 bmse010511 1 C3 ? C ? ? ? ? 223.0400 220.0000 ? ? ? 3 bmse010511 1 C4 ? C ? ? ? ? 378.9230 220.0000 ? ? ? 4 bmse010511 1 C5 ? C ? ? ? ? 197.0570 145.0000 ? ? ? 5 bmse010511 1 C6 ? C ? ? ? ? 326.9630 370.0000 ? ? ? 6 bmse010511 1 C7 ? C ? ? ? ? 300.9800 355.0000 ? ? ? 7 bmse010511 1 C8 ? C ? ? ? ? 352.9430 355.0000 ? ? ? 8 bmse010511 1 C9 ? C ? ? ? ? 197.0570 55.0000 ? ? ? 9 bmse010511 1 C10 ? C ? ? ? ? 197.0570 85.0000 ? ? ? 10 bmse010511 1 C11 ? C ? ? ? ? 300.9800 325.0000 ? ? ? 11 bmse010511 1 C12 ? C ? ? ? ? 352.9430 325.0000 ? ? ? 12 bmse010511 1 C13 ? C ? ? ? ? 223.0400 40.0000 ? ? ? 13 bmse010511 1 C14 ? C ? ? ? ? 223.0400 100.0000 ? ? ? 14 bmse010511 1 C15 ? C ? ? ? ? 275.0000 190.0000 ? ? ? 15 bmse010511 1 C16 ? C ? ? ? ? 326.9630 190.0000 ? ? ? 16 bmse010511 1 C17 ? C ? ? ? ? 326.9630 280.0000 ? ? ? 17 bmse010511 1 C18 ? C ? ? ? ? 326.9630 310.0000 ? ? ? 18 bmse010511 1 C19 ? C ? ? ? ? 300.9800 175.0000 ? ? ? 19 bmse010511 1 C20 ? C ? ? ? ? 249.0200 55.0000 ? ? ? 20 bmse010511 1 C21 ? C ? ? ? ? 249.0200 85.0000 ? ? ? 21 bmse010511 1 C22 ? C ? ? ? ? 275.0000 220.0000 ? ? ? 22 bmse010511 1 C23 ? C ? ? ? ? 326.9630 220.0000 ? ? ? 23 bmse010511 1 C24 ? C ? ? ? ? 300.9800 145.0000 ? ? ? 24 bmse010511 1 C25 ? C ? ? ? ? 300.9800 235.0000 ? ? ? 25 bmse010511 1 C26 ? C ? ? ? ? 275.0000 130.0000 ? ? ? 26 bmse010511 1 C27 ? C ? ? ? ? 249.0200 145.0000 ? ? ? 27 bmse010511 1 O28 ? O ? ? ? ? 326.9630 130.0000 ? ? ? 28 bmse010511 1 O29 ? O ? ? ? ? 249.0200 175.0000 ? ? ? 29 bmse010511 1 O30 ? O ? ? ? ? 275.0000 40.0000 ? ? ? 30 bmse010511 1 O31 ? O ? ? ? ? 249.0200 235.0000 ? ? ? 31 bmse010511 1 O32 ? O ? ? ? ? 352.9430 235.0000 ? ? ? 32 bmse010511 1 O33 ? O ? ? ? ? 223.0400 130.0000 ? ? ? 33 bmse010511 1 O34 ? O ? ? ? ? 300.9800 265.0000 ? ? ? 34 bmse010511 1 O35 ? O ? ? ? ? 275.0000 100.0000 ? ? ? 35 bmse010511 1 H38 ? H ? ? ? ? 161.7768 146.1080 ? ? ? 36 bmse010511 1 H37 ? H ? ? ? ? 154.9690 120.6998 ? ? ? 37 bmse010511 1 H36 ? H ? ? ? ? 180.3772 113.8920 ? ? ? 38 bmse010511 1 H40 ? H ? ? ? ? 256.4000 10.0000 ? ? ? 39 bmse010511 1 H39 ? H ? ? ? ? 275.0000 -8.6000 ? ? ? 40 bmse010511 1 H41 ? H ? ? ? ? 293.6000 10.0000 ? ? ? 41 bmse010511 1 H44 ? H ? ? ? ? 213.7398 236.1080 ? ? ? 42 bmse010511 1 H42 ? H ? ? ? ? 206.9320 210.6998 ? ? ? 43 bmse010511 1 H43 ? H ? ? ? ? 232.3402 203.8920 ? ? ? 44 bmse010511 1 H45 ? H ? ? ? ? 369.6228 203.8920 ? ? ? 45 bmse010511 1 H46 ? H ? ? ? ? 395.0310 210.6998 ? ? ? 46 bmse010511 1 H47 ? H ? ? ? ? 388.2232 236.1080 ? ? ? 47 bmse010511 1 H48 ? H ? ? ? ? 209.0125 159.2488 ? ? ? 48 bmse010511 1 H49 ? H ? ? ? ? 185.1009 159.2482 ? ? ? 49 bmse010511 1 H50 ? H ? ? ? ? 326.9635 388.6000 ? ? ? 50 bmse010511 1 H51 ? H ? ? ? ? 284.8721 364.3003 ? ? ? 51 bmse010511 1 H52 ? H ? ? ? ? 369.0511 364.2999 ? ? ? 52 bmse010511 1 H53 ? H ? ? ? ? 180.9491 45.6997 ? ? ? 53 bmse010511 1 H54 ? H ? ? ? ? 180.9491 94.3003 ? ? ? 54 bmse010511 1 H55 ? H ? ? ? ? 284.8721 315.6997 ? ? ? 55 bmse010511 1 H56 ? H ? ? ? ? 369.0511 315.7001 ? ? ? 56 bmse010511 1 H57 ? H ? ? ? ? 223.0405 21.4000 ? ? ? 57 bmse010511 1 H58 ? H ? ? ? ? 223.0405 118.6000 ? ? ? 58 bmse010511 1 H59 ? H ? ? ? ? 258.8919 180.7001 ? ? ? 59 bmse010511 1 H60 ? H ? ? ? ? 343.0709 180.6997 ? ? ? 60 bmse010511 1 H61 ? H ? ? ? ? 333.3242 262.5215 ? ? ? 61 bmse010511 1 H62 ? H ? ? ? ? 345.2805 283.2296 ? ? ? 62 bmse010511 1 H63 ? H ? ? ? ? 300.9805 126.4000 ? ? ? 63 bmse010511 1 H64 ? H ? ? ? ? 258.8919 120.7001 ? ? ? 64 bmse010511 1 H65 ? H ? ? ? ? 326.9637 111.4000 ? ? ? 65 bmse010511 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C1 C1 BMRB bmse010511 1 C2 C2 BMRB bmse010511 1 C3 C3 BMRB bmse010511 1 C4 C4 BMRB bmse010511 1 C5 C5 BMRB bmse010511 1 C6 C6 BMRB bmse010511 1 C7 C7 BMRB bmse010511 1 C8 C8 BMRB bmse010511 1 C9 C9 BMRB bmse010511 1 C10 C10 BMRB bmse010511 1 C11 C11 BMRB bmse010511 1 C12 C12 BMRB bmse010511 1 C13 C13 BMRB bmse010511 1 C14 C14 BMRB bmse010511 1 C15 C15 BMRB bmse010511 1 C16 C16 BMRB bmse010511 1 C17 C17 BMRB bmse010511 1 C18 C18 BMRB bmse010511 1 C19 C19 BMRB bmse010511 1 C20 C20 BMRB bmse010511 1 C21 C21 BMRB bmse010511 1 C22 C22 BMRB bmse010511 1 C23 C23 BMRB bmse010511 1 C24 C24 BMRB bmse010511 1 C25 C25 BMRB bmse010511 1 C26 C26 BMRB bmse010511 1 C27 C27 BMRB bmse010511 1 O28 O28 BMRB bmse010511 1 O29 O29 BMRB bmse010511 1 O30 O30 BMRB bmse010511 1 O31 O31 BMRB bmse010511 1 O32 O32 BMRB bmse010511 1 O33 O33 BMRB bmse010511 1 O34 O34 BMRB bmse010511 1 O35 O35 BMRB bmse010511 1 H38 H36 BMRB bmse010511 1 H37 H37 BMRB bmse010511 1 H36 H38 BMRB bmse010511 1 H40 H39 BMRB bmse010511 1 H39 H40 BMRB bmse010511 1 H41 H41 BMRB bmse010511 1 H44 H42 BMRB bmse010511 1 H42 H43 BMRB bmse010511 1 H43 H44 BMRB bmse010511 1 H45 H45 BMRB bmse010511 1 H46 H46 BMRB bmse010511 1 H47 H47 BMRB bmse010511 1 H48 H48 BMRB bmse010511 1 H49 H49 BMRB bmse010511 1 H50 H50 BMRB bmse010511 1 H51 H51 BMRB bmse010511 1 H52 H52 BMRB bmse010511 1 H53 H53 BMRB bmse010511 1 H54 H54 BMRB bmse010511 1 H55 H55 BMRB bmse010511 1 H56 H56 BMRB bmse010511 1 H57 H57 BMRB bmse010511 1 H58 H58 BMRB bmse010511 1 H59 H59 BMRB bmse010511 1 H60 H60 BMRB bmse010511 1 H61 H61 BMRB bmse010511 1 H62 H62 BMRB bmse010511 1 H63 H63 BMRB bmse010511 1 H64 H64 BMRB bmse010511 1 H65 H65 BMRB bmse010511 1 C1 C1 ALATIS bmse010511 1 C2 C2 ALATIS bmse010511 1 C3 C3 ALATIS bmse010511 1 C4 C4 ALATIS bmse010511 1 C5 C5 ALATIS bmse010511 1 C6 C6 ALATIS bmse010511 1 C7 C7 ALATIS bmse010511 1 C8 C8 ALATIS bmse010511 1 C9 C9 ALATIS bmse010511 1 C10 C10 ALATIS bmse010511 1 C11 C11 ALATIS bmse010511 1 C12 C12 ALATIS bmse010511 1 C13 C13 ALATIS bmse010511 1 C14 C14 ALATIS bmse010511 1 C15 C15 ALATIS bmse010511 1 C16 C16 ALATIS bmse010511 1 C17 C17 ALATIS bmse010511 1 C18 C18 ALATIS bmse010511 1 C19 C19 ALATIS bmse010511 1 C20 C20 ALATIS bmse010511 1 C21 C21 ALATIS bmse010511 1 C22 C22 ALATIS bmse010511 1 C23 C23 ALATIS bmse010511 1 C24 C24 ALATIS bmse010511 1 C25 C25 ALATIS bmse010511 1 C26 C26 ALATIS bmse010511 1 C27 C27 ALATIS bmse010511 1 O28 O28 ALATIS bmse010511 1 O29 O29 ALATIS bmse010511 1 O30 O30 ALATIS bmse010511 1 O31 O31 ALATIS bmse010511 1 O32 O32 ALATIS bmse010511 1 O33 O33 ALATIS bmse010511 1 O34 O34 ALATIS bmse010511 1 O35 O35 ALATIS bmse010511 1 H38 H38 ALATIS bmse010511 1 H37 H37 ALATIS bmse010511 1 H36 H36 ALATIS bmse010511 1 H40 H40 ALATIS bmse010511 1 H39 H39 ALATIS bmse010511 1 H41 H41 ALATIS bmse010511 1 H44 H44 ALATIS bmse010511 1 H42 H42 ALATIS bmse010511 1 H43 H43 ALATIS bmse010511 1 H45 H45 ALATIS bmse010511 1 H46 H46 ALATIS bmse010511 1 H47 H47 ALATIS bmse010511 1 H48 H48 ALATIS bmse010511 1 H49 H49 ALATIS bmse010511 1 H50 H50 ALATIS bmse010511 1 H51 H51 ALATIS bmse010511 1 H52 H52 ALATIS bmse010511 1 H53 H53 ALATIS bmse010511 1 H54 H54 ALATIS bmse010511 1 H55 H55 ALATIS bmse010511 1 H56 H56 ALATIS bmse010511 1 H57 H57 ALATIS bmse010511 1 H58 H58 ALATIS bmse010511 1 H59 H59 ALATIS bmse010511 1 H60 H60 ALATIS bmse010511 1 H61 H61 ALATIS bmse010511 1 H62 H62 ALATIS bmse010511 1 H63 H63 ALATIS bmse010511 1 H64 H64 ALATIS bmse010511 1 H65 H65 ALATIS bmse010511 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Details _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING C1 C5 ? bmse010511 1 2 covalent SING C2 O30 ? bmse010511 1 3 covalent SING C3 O31 ? bmse010511 1 4 covalent SING C4 O32 ? bmse010511 1 5 covalent SING C5 O33 ? bmse010511 1 6 covalent DOUB C6 C7 ? bmse010511 1 7 covalent SING C6 C8 ? bmse010511 1 8 covalent SING C7 C11 ? bmse010511 1 9 covalent DOUB C8 C12 ? bmse010511 1 10 covalent DOUB C9 C10 ? bmse010511 1 11 covalent SING C9 C13 ? bmse010511 1 12 covalent SING C10 C14 ? bmse010511 1 13 covalent DOUB C11 C18 ? bmse010511 1 14 covalent SING C12 C18 ? bmse010511 1 15 covalent DOUB C13 C20 ? bmse010511 1 16 covalent DOUB C14 C21 ? bmse010511 1 17 covalent DOUB C15 C19 ? bmse010511 1 18 covalent SING C15 C22 ? bmse010511 1 19 covalent SING C16 C19 ? bmse010511 1 20 covalent DOUB C16 C23 ? bmse010511 1 21 covalent SING C17 C18 ? bmse010511 1 22 covalent SING C17 O34 ? bmse010511 1 23 covalent SING C19 C24 ? bmse010511 1 24 covalent SING C20 C21 ? bmse010511 1 25 covalent SING C20 O30 ? bmse010511 1 26 covalent SING C21 O35 ? bmse010511 1 27 covalent DOUB C22 C25 ? bmse010511 1 28 covalent SING C22 O31 ? bmse010511 1 29 covalent SING C23 C25 ? bmse010511 1 30 covalent SING C23 O32 ? bmse010511 1 31 covalent SING C24 C26 ? bmse010511 1 32 covalent SING C24 O28 ? bmse010511 1 33 covalent SING C25 O34 ? bmse010511 1 34 covalent SING C26 C27 ? bmse010511 1 35 covalent SING C26 O35 ? bmse010511 1 36 covalent DOUB C27 O29 ? bmse010511 1 37 covalent SING C27 O33 ? bmse010511 1 38 covalent SING C1 H38 ? bmse010511 1 39 covalent SING C1 H37 ? bmse010511 1 40 covalent SING C1 H36 ? bmse010511 1 41 covalent SING C2 H40 ? bmse010511 1 42 covalent SING C2 H39 ? bmse010511 1 43 covalent SING C2 H41 ? bmse010511 1 44 covalent SING C3 H44 ? bmse010511 1 45 covalent SING C3 H42 ? bmse010511 1 46 covalent SING C3 H43 ? bmse010511 1 47 covalent SING C4 H45 ? bmse010511 1 48 covalent SING C4 H46 ? bmse010511 1 49 covalent SING C4 H47 ? bmse010511 1 50 covalent SING C5 H48 ? bmse010511 1 51 covalent SING C5 H49 ? bmse010511 1 52 covalent SING C6 H50 ? bmse010511 1 53 covalent SING C7 H51 ? bmse010511 1 54 covalent SING C8 H52 ? bmse010511 1 55 covalent SING C9 H53 ? bmse010511 1 56 covalent SING C10 H54 ? bmse010511 1 57 covalent SING C11 H55 ? bmse010511 1 58 covalent SING C12 H56 ? bmse010511 1 59 covalent SING C13 H57 ? bmse010511 1 60 covalent SING C14 H58 ? bmse010511 1 61 covalent SING C15 H59 ? bmse010511 1 62 covalent SING C16 H60 ? bmse010511 1 63 covalent SING C17 H61 ? bmse010511 1 64 covalent SING C17 H62 ? bmse010511 1 65 covalent SING C24 H63 ? bmse010511 1 66 covalent SING C26 H64 ? bmse010511 1 67 covalent SING O28 H65 ? bmse010511 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_code _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_experimental_method _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_details _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID yes USDA_NMR_database 3054 'Compound Number' ? lignin_cw_compound_3054 ? 'matching entry' ? bmse010511 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse010511 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse010511 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 Unnamed 'natural abundance' 1 $lignin_cw_compound_3054 ? Solute Saturated ? ? 1 ? 'John Ralph Lab' Unnamed n/a bmse010511 1 2 Acetone ? 1 ? ? Solvent 100 ? ? % ? ? ? ? bmse010511 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse010511 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID 1 297 ? K bmse010511 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse010511 _Software.ID 1 _Software.Name X-WINNMR _Software.Version ? _Software.Details ? loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID Bruker ? ? bmse010511 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Processing bmse010511 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_360 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_360 _NMR_spectrometer.Entry_ID bmse010511 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DRX _NMR_spectrometer.Field_strength 360 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse010511 _Experiment_list.ID 1 _Experiment_list.Details ? loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_360 ? ? bmse010511 1 2 '1D 13C' yes ? ? 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_360 ? ? bmse010511 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference_1 _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference_1 _Chem_shift_reference.Entry_ID bmse010511 _Chem_shift_reference.ID 1 _Chem_shift_reference.Details ? loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.External_ref_loc _Chem_shift_ref.External_ref_sample_geometry _Chem_shift_ref.External_ref_axis _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 Acetone-d6 'residual solvent methyl proton' ppm 2.04 internal direct 1.000000000 ? ? ? bmse010511 1 C 13 Acetone-d6 'solvent methyl carbon' ppm 29.83 internal direct ? ? ? ? bmse010511 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts_1 _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts_1 _Assigned_chem_shift_list.Entry_ID bmse010511 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference_1 _Assigned_chem_shift_list.Error_derivation_method ? _Assigned_chem_shift_list.Details ? loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 1 '1D 1H' 1 $sample_1 bmse010511 1 2 '1D 13C' 1 $sample_1 bmse010511 1 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Method_ID _Chem_shift_software.Method_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 ? ? bmse010511 1 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Val_err _Atom_chem_shift.Assign_fig_of_merit _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Occupancy _Atom_chem_shift.Auth_seq_ID _Atom_chem_shift.Auth_comp_ID _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Details _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C1 C 13 14.35 ? ? 1 ? ? ? CH3 ? bmse010511 1 2 1 1 1 C2 C 13 56.36 ? ? 1 ? ? ? BOMe ? bmse010511 1 3 1 1 1 C3 C 13 56.44 ? ? 1 ? ? ? AOMe ? bmse010511 1 4 1 1 1 C4 C 13 56.44 ? ? 1 ? ? ? AOMe ? bmse010511 1 5 1 1 1 C5 C 13 61.29 ? ? 1 ? ? ? CH2 ? bmse010511 1 6 1 1 1 C17 C 13 75.06 ? ? 1 ? ? ? CA ? bmse010511 1 7 1 1 1 C24 C 13 75.59 ? ? 1 ? ? ? A ? bmse010511 1 8 1 1 1 C26 C 13 84.38 ? ? 1 ? ? ? B ? bmse010511 1 9 1 1 1 C15 C 13 105.44 ? ? 1 ? ? ? A2 ? bmse010511 1 10 1 1 1 C16 C 13 105.44 ? ? 1 ? ? ? A6 ? bmse010511 1 11 1 1 1 C13 C 13 113.87 ? ? 1 ? ? ? B2 ? bmse010511 1 12 1 1 1 C14 C 13 117.25 ? ? 1 ? ? ? B5 ? bmse010511 1 13 1 1 1 C10 C 13 121.61 ? ? 1 ? ? ? B6 ? bmse010511 1 14 1 1 1 C9 C 13 123.44 ? ? 1 ? ? ? B1 ? bmse010511 1 15 1 1 1 C6 C 13 128.31 ? ? 1 ? ? ? C4 ? bmse010511 1 16 1 1 1 C7 C 13 128.76 ? ? 1 ? ? ? C3 ? bmse010511 1 17 1 1 1 C8 C 13 128.76 ? ? 1 ? ? ? C5 ? bmse010511 1 18 1 1 1 C11 C 13 128.82 ? ? 1 ? ? ? C2 ? bmse010511 1 19 1 1 1 C12 C 13 128.82 ? ? 1 ? ? ? C6 ? bmse010511 1 20 1 1 1 C19 C 13 136.70 ? ? 1 ? ? ? A1 ? bmse010511 1 21 1 1 1 C25 C 13 137.61 ? ? 1 ? ? ? A4 ? bmse010511 1 22 1 1 1 C18 C 13 139.47 ? ? 1 ? ? ? C1 ? bmse010511 1 23 1 1 1 C21 C 13 148.70 ? ? 1 ? ? ? B4 ? bmse010511 1 24 1 1 1 C20 C 13 151.03 ? ? 1 ? ? ? B3 ? bmse010511 1 25 1 1 1 C22 C 13 154.17 ? ? 1 ? ? ? A3 ? bmse010511 1 26 1 1 1 C25 C 13 154.17 ? ? 1 ? ? ? A5 ? bmse010511 1 27 1 1 1 C27 C 13 169.85 ? ? 1 ? ? ? G ? bmse010511 1 28 1 1 1 H38 H 1 1.08 ? ? 1 ? ? ? CH3 ? bmse010511 1 29 1 1 1 H37 H 1 1.08 ? ? 1 ? ? ? CH3 ? bmse010511 1 30 1 1 1 H36 H 1 1.08 ? ? 1 ? ? ? CH3 ? bmse010511 1 31 1 1 1 H40 H 1 3.80 ? ? 1 ? ? ? BOMe ? bmse010511 1 32 1 1 1 H39 H 1 3.80 ? ? 1 ? ? ? BOMe ? bmse010511 1 33 1 1 1 H41 H 1 3.80 ? ? 1 ? ? ? BOMe ? bmse010511 1 34 1 1 1 H44 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 35 1 1 1 H42 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 36 1 1 1 H43 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 37 1 1 1 H45 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 38 1 1 1 H46 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 39 1 1 1 H47 H 1 3.82 ? ? 1 ? ? ? AOMe ? bmse010511 1 40 1 1 1 H48 H 1 4.04 ? ? 1 ? ? ? CH2 ? bmse010511 1 41 1 1 1 H49 H 1 4.04 ? ? 1 ? ? ? CH2 ? bmse010511 1 42 1 1 1 H64 H 1 4.72 ? ? 1 ? ? ? B ? bmse010511 1 43 1 1 1 H61 H 1 4.93 ? ? 1 ? ? ? CA ? bmse010511 1 44 1 1 1 H62 H 1 4.93 ? ? 1 ? ? ? CA ? bmse010511 1 45 1 1 1 H63 H 1 5.08 ? ? 1 ? ? ? A ? bmse010511 1 46 1 1 1 H59 H 1 6.83 ? ? 1 ? ? ? A2 ? bmse010511 1 47 1 1 1 H60 H 1 6.83 ? ? 1 ? ? ? A6 ? bmse010511 1 48 1 1 1 H58 H 1 6.81 0.04 ? 1 ? ? ? B5 ? bmse010511 1 49 1 1 1 H54 H 1 6.81 0.04 ? 1 ? ? ? B6 ? bmse010511 1 50 1 1 1 H53 H 1 6.95 0.05 ? 1 ? ? ? B1 ? bmse010511 1 51 1 1 1 H57 H 1 6.95 0.05 ? 1 ? ? ? B2 ? bmse010511 1 52 1 1 1 H51 H 1 7.31 0.07 ? 1 ? ? ? C3 ? bmse010511 1 53 1 1 1 H50 H 1 7.31 0.07 ? 1 ? ? ? C4 ? bmse010511 1 54 1 1 1 H52 H 1 7.31 0.07 ? 1 ? ? ? C5 ? bmse010511 1 55 1 1 1 H55 H 1 7.50 ? ? 1 ? ? ? C2 ? bmse010511 1 56 1 1 1 H56 H 1 7.50 ? ? 1 ? ? ? C6 ? bmse010511 1 stop_ save_