data_bmse000730 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000730 _Entry.Title ; 2_2_dimethylsuccinic_acid ; _Entry.Version_type update _Entry.Submission_date 2010-03-31 _Entry.Accession_date 2010-03-31 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2010-03-31 _Entry.Origination author _Entry.NMR_STAR_version 3.2.0.16 _Entry.Original_NMR_STAR_version 3.1 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE000730 loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.Middle_initials _Entry_author.Entry_ID 1 Francisca Jofre . bmse000730 2 Mark Anderson E. bmse000730 3 John Markley L. bmse000730 4 Ravi Rapolu . bmse000730 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics 'Madison Metabolomics Consortium' MMC bmse000730 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000730 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 6 bmse000730 '1H chemical shifts' 8 bmse000730 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 14 . . 2017-12-19 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse000730 13 . . 2017-10-12 2017-10-12 update BMRB ; Remediated Experiment_file loop if present and standardized mol and png file tags. ; bmse000730 12 . . 2012-10-17 2010-03-31 update BMRB 'Set all _Chem_comp_SMILES Types to lower case' bmse000730 11 . . 2012-09-13 2010-03-31 update BMRB 'Added PubChem SID 111677861 to database loop' bmse000730 10 . . 2012-07-24 2010-03-31 update BMRB 'Fixed potential erros in assigned chemical shifts' bmse000730 9 . . 2011-12-14 2010-03-31 update BMRB 'Set Assembly.Name to match Chem_comp.name' bmse000730 8 . . 2011-09-09 2010-03-31 update BMRB 'Brought up to date with latest Dictionary' bmse000730 7 . . 2011-04-04 2010-03-31 update BMRB 'Added Provenance tag to chem_comp' bmse000730 6 . . 2011-04-01 2010-03-31 update BMRB 'Removed empty spectral_peak_DEPT_90' bmse000730 5 . . 2010-11-16 2010-03-31 update BMRB 'Updated chem comp Paramagnetic and Aromatic' bmse000730 4 . . 2010-10-20 2010-03-31 update Author 'Assignments, 13C transition lists, 1H transition lists by Francisca Jofre' bmse000730 3 . . 2010-10-08 2010-03-31 update BMRB 'Removed empty loops for database compliance' bmse000730 2 . . 2010-08-06 2010-03-31 update Author '1H_13C_HSQC data updated' bmse000730 1 . . 2010-03-31 2010-03-31 original BMRB 'Original spectra from MMC' bmse000730 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000730 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title ; Database resources of the National Center for Biotechnology Information. ; _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. bmse000730 1 2 T. Barrett T. . bmse000730 1 3 D. Benson D. A. bmse000730 1 4 S. Bryant S. H. bmse000730 1 5 K. Canese K. . bmse000730 1 6 V. Chetvenin V. . bmse000730 1 7 D. Church D. M. bmse000730 1 8 M. DiCuccio M. . bmse000730 1 9 R. Edgar R. . bmse000730 1 10 S. Federhen S. . bmse000730 1 11 L. Geer L. Y. bmse000730 1 12 W. Helmberg W. . bmse000730 1 13 Y. Kapustin Y. . bmse000730 1 14 D. Kenton D. L. bmse000730 1 15 O. Khovayko O. . bmse000730 1 16 D. Lipman D. J. bmse000730 1 17 T. Madden T. L. bmse000730 1 18 D. Maglott D. R. bmse000730 1 19 J. Ostell J. . bmse000730 1 20 K. Pruitt K. D. bmse000730 1 21 G. Schuler G. D. bmse000730 1 22 L. Schriml L. M. bmse000730 1 23 E. Sequeira E. . bmse000730 1 24 S. Sherry S. T. bmse000730 1 25 K. Sirotkin K. . bmse000730 1 26 A. Souvorov A. . bmse000730 1 27 G. Starchenko G. . bmse000730 1 28 T. Suzek T. O. bmse000730 1 29 R. Tatusov R. . bmse000730 1 30 T. Tatusova T. A. bmse000730 1 31 L. Bagner L. . bmse000730 1 32 E. Yaschenko E. . bmse000730 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000730 _Assembly.ID 1 _Assembly.Name '2,2-dimethylsuccinic acid' _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 '2,2-dimethylsuccinic acid' 1 $entity_1 yes native no no bmse000730 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_entity_1 _Entity.Sf_category entity _Entity.Sf_framecode entity_1 _Entity.Entry_ID bmse000730 _Entity.ID 1 _Entity.Name '2,2-dimethylsuccinic acid' _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000730 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000730 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $entity_1 n/a 'multiple natural sources' yes 'not applicable' n/a n/a n/a n/a n/a bmse000730 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000730 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Production_method _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $entity_1 'chemical synthesis' bmse000730 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000730 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name '2,2-dimethylsuccinic acid' _Chem_comp.Type non-polymer _Chem_comp.BMRB_code bmse000730 _Chem_comp.InChI_code InChI=1S/C6H10O4/c1-6(2,5(9)10)3-4(7)8/h3H2,1-2H3,(H,7,8)(H,9,10) _Chem_comp.Paramagnetic no _Chem_comp.Aromatic no _Chem_comp.Formula 'C6 H10 O4' _Chem_comp.Formula_weight 146.1412 _Chem_comp.Formula_mono_iso_wt_nat 146.0579088094 _Chem_comp.Formula_mono_iso_wt_13C 152.0780378362 _Chem_comp.Formula_mono_iso_wt_15N 146.0579088094 _Chem_comp.Formula_mono_iso_wt_13C_15N 152.0780378362 _Chem_comp.Image_file_name bmse000730.png _Chem_comp.Image_file_format png _Chem_comp.Struct_file_name bmse000730.mol _Chem_comp.Struct_file_format mol loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID '2,2-Dimethylbutanedioic acid' synonym bmse000730 1 '2,2-Dimethylsuccinic acid' synonym bmse000730 1 '2,2-dimethylbutanedioic acid' synonym bmse000730 1 '2,2-dimethylsuccinic acid' synonym bmse000730 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID InChI=1S/C6H10O4/c1-6(2,5(9)10)3-4(7)8/h3H2,1-2H3,(H,7,8)(H,9,10) INCHI ALATIS 3.003 bmse000730 1 InChI=1S/C6H10O4/c1-6(2,5(9)10)3-4(7)8/h3H2,1-2H3,(H,7,8)(H,9,10) INCHI na na bmse000730 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID '2,2-dimethylbutanedioic acid' PUBCHEM_IUPAC_CAS_NAME bmse000730 1 '2,2-dimethylbutanedioic acid' PUBCHEM_IUPAC_NAME bmse000730 1 '2,2-dimethylbutanedioic acid' PUBCHEM_IUPAC_OPENEYE_NAME bmse000730 1 '2,2-dimethylbutanedioic acid' PUBCHEM_IUPAC_SYSTEMATIC_NAME bmse000730 1 '2,2-dimethylsuccinic acid' PUBCHEM_IUPAC_TRADITIONAL_NAME bmse000730 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID canonical CC(C)(CC(=O)O)C(=O)O bmse000730 1 isomeric CC(C)(CC(=O)O)C(=O)O bmse000730 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID O9 O 6.8671 -0.3170 1 bmse000730 1 O10 O 6.0010 1.1830 2 bmse000730 1 O7 O 2.5369 -0.8170 3 bmse000730 1 O8 O 3.4030 0.6830 4 bmse000730 1 C6 C 5.1350 -0.3170 5 bmse000730 1 C3 C 4.2690 -0.8170 6 bmse000730 1 C1 C 4.6350 0.5490 7 bmse000730 1 C2 C 5.6350 -1.1830 8 bmse000730 1 C5 C 6.0010 0.1830 9 bmse000730 1 C4 C 3.4030 -0.3170 10 bmse000730 1 H17 H 3.8705 -1.2919 11 bmse000730 1 H18 H 4.6675 -1.2919 12 bmse000730 1 H12 H 4.3250 1.0860 13 bmse000730 1 H11 H 4.0981 0.2390 14 bmse000730 1 H13 H 5.1719 0.8590 15 bmse000730 1 H15 H 5.0981 -1.4930 16 bmse000730 1 H14 H 5.9450 -1.7199 17 bmse000730 1 H16 H 6.1719 -0.8730 18 bmse000730 1 H20 H 7.4040 -0.0070 19 bmse000730 1 H19 H 2.0000 -0.5070 20 bmse000730 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID C1 C7 BMRB bmse000730 1 C1 C1 ALATIS bmse000730 1 C2 C8 BMRB bmse000730 1 C2 C2 ALATIS bmse000730 1 C3 C6 BMRB bmse000730 1 C3 C3 ALATIS bmse000730 1 C4 C10 BMRB bmse000730 1 C4 C4 ALATIS bmse000730 1 C5 C9 BMRB bmse000730 1 C5 C5 ALATIS bmse000730 1 C6 C5 BMRB bmse000730 1 C6 C6 ALATIS bmse000730 1 H11 H14 BMRB bmse000730 1 H11 H11 ALATIS bmse000730 1 H12 H13 BMRB bmse000730 1 H12 H12 ALATIS bmse000730 1 H13 H15 BMRB bmse000730 1 H13 H13 ALATIS bmse000730 1 H14 H17 BMRB bmse000730 1 H14 H14 ALATIS bmse000730 1 H15 H16 BMRB bmse000730 1 H15 H15 ALATIS bmse000730 1 H16 H18 BMRB bmse000730 1 H16 H16 ALATIS bmse000730 1 H17 H11 BMRB bmse000730 1 H17 H17 ALATIS bmse000730 1 H18 H12 BMRB bmse000730 1 H18 H18 ALATIS bmse000730 1 H19 H20 BMRB bmse000730 1 H19 H19 ALATIS bmse000730 1 H20 H19 BMRB bmse000730 1 H20 H20 ALATIS bmse000730 1 O10 O2 BMRB bmse000730 1 O10 O10 ALATIS bmse000730 1 O7 O3 BMRB bmse000730 1 O7 O7 ALATIS bmse000730 1 O8 O4 BMRB bmse000730 1 O8 O8 ALATIS bmse000730 1 O9 O1 BMRB bmse000730 1 O9 O9 ALATIS bmse000730 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING O9 C5 bmse000730 1 2 covalent SING O9 H20 bmse000730 1 3 covalent DOUB O10 C5 bmse000730 1 4 covalent SING O7 C4 bmse000730 1 5 covalent SING O7 H19 bmse000730 1 6 covalent DOUB O8 C4 bmse000730 1 7 covalent SING C6 C3 bmse000730 1 8 covalent SING C6 C1 bmse000730 1 9 covalent SING C6 C2 bmse000730 1 10 covalent SING C6 C5 bmse000730 1 11 covalent SING C3 C4 bmse000730 1 12 covalent SING C3 H17 bmse000730 1 13 covalent SING C3 H18 bmse000730 1 14 covalent SING C1 H12 bmse000730 1 15 covalent SING C1 H11 bmse000730 1 16 covalent SING C1 H13 bmse000730 1 17 covalent SING C2 H15 bmse000730 1 18 covalent SING C2 H14 bmse000730 1 19 covalent SING C2 H16 bmse000730 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID yes CAS 597-43-3 . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no 'CAS Registry' 597-43-3 'registry number' '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no 'EPA DSSTox' 21581 . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no KEGG D186007_ALDRICH 'compound ID' '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no LipidMAPS LMFA01170080 . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 yes MMCD cq_17628 . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no 'NIST Chemistry WebBook' 3976863353 . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 10528922 sid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 111677861 sid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 11701 cid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 24893555 sid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 48414773 sid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no PubChem 85291409 sid '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 no Sigma-Aldrich D186007_ALDRICH . '2,2-dimethylsuccinic acid' 'matching entry' bmse000730 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000730 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000730 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_units _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 '2,2-dimethylsuccinic acid' 'natural abundance' 1 $entity_1 Solute 100 mM Sigma-Aldrich '2,2-dimethylsuccinic acid' n/a bmse000730 1 2 D2O . 1 . Solvent 100 % . . . bmse000730 1 3 'sodium phosphate' . 1 . Buffer 50 mM . . . bmse000730 1 4 'sodium azide' . 1 . Cytocide 500 uM . . . bmse000730 1 5 DSS . 1 . Reference 500 uM . . . bmse000730 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000730 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 pH bmse000730 1 temperature 298 K bmse000730 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000730 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' bmse000730 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000730 1 'Data analysis' bmse000730 1 'Peak picking' bmse000730 1 Processing bmse000730 1 stop_ save_ save_software_2 _Software.Sf_category software _Software.Sf_framecode software_2 _Software.Entry_ID bmse000730 _Software.ID 2 _Software.Name XWIN-NMR _Software.Version 3.5 loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' bmse000730 2 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000730 2 'Data analysis' bmse000730 2 'Peak picking' bmse000730 2 Processing bmse000730 2 stop_ save_ save_software_3 _Software.Sf_category software _Software.Sf_framecode software_3 _Software.Entry_ID bmse000730 _Software.ID 3 _Software.Name NUTS _Software.Version '1D Version - 20060331' loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Acorn NMR Inc.' bmse000730 3 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'Data analysis' bmse000730 3 'Peak picking' bmse000730 3 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_DMX_500 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_500 _NMR_spectrometer.Entry_ID bmse000730 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 500 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000730 _Experiment_list.ID 1 loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 2 '2D [1H,1H]-TOCSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 3 '1D 13C' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 4 '1D DEPT90' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 5 '1D DEPT135' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 6 '2D [1H,13C]-HSQC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 7 '2D [1H,13C]-HMBC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 8 '2D [1H,1H]-COSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_500 bmse000730 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Directory_path _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 1H text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 1 1H.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 2 HH_TOCSY text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 2 HH_TOCSY.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 3 13C text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 3 13C.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 4 DEPT_90 text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 4 DEPT_90.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 5 DEPT_135 text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 5 DEPT_135.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 6 1H_13C_HSQC text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 6 1H_13C_HSQC.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 7 1H_13C_HMBC text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 7 1H_13C_HMBC.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 8 HH_COSY text/directory nmr/set01/ 'NMR experiment directory' bmse000730 1 8 HH_COSY.png image/png nmr/set01/spectra 'Spectral image' bmse000730 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000730 _Chem_shift_reference.ID 1 loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID C 13 DSS 'methyl carbon' ppm 0.00 internal direct 1.000000000 bmse000730 1 H 1 DSS 'methyl protons' ppm 0.00 internal direct 1.000000000 bmse000730 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000730 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference loop_ _Chem_shift_experiment.Experiment_ID _Chem_shift_experiment.Experiment_name _Chem_shift_experiment.Sample_ID _Chem_shift_experiment.Sample_label _Chem_shift_experiment.Entry_ID _Chem_shift_experiment.Assigned_chem_shift_list_ID 1 '1D 1H' 1 $sample_1 bmse000730 1 2 '2D [1H,1H]-TOCSY' 1 $sample_1 bmse000730 1 3 '1D 13C' 1 $sample_1 bmse000730 1 4 '1D DEPT90' 1 $sample_1 bmse000730 1 5 '1D DEPT135' 1 $sample_1 bmse000730 1 6 '2D [1H,13C]-HSQC' 1 $sample_1 bmse000730 1 7 '2D [1H,13C]-HMBC' 1 $sample_1 bmse000730 1 8 '2D [1H,1H]-COSY' 1 $sample_1 bmse000730 1 stop_ loop_ _Chem_shift_software.Software_ID _Chem_shift_software.Software_label _Chem_shift_software.Entry_ID _Chem_shift_software.Assigned_chem_shift_list_ID 1 $software_1 bmse000730 1 stop_ loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 C6 C 13 44.708 1 C5 bmse000730 1 2 1 1 1 C3 C 13 50.847 1 C6 bmse000730 1 3 1 1 1 C1 C 13 27.974 1 C7 bmse000730 1 4 1 1 1 C2 C 13 27.974 1 C8 bmse000730 1 5 1 1 1 C5 C 13 189.856 1 C9 bmse000730 1 6 1 1 1 C4 C 13 184.015 1 C10 bmse000730 1 7 1 1 1 H17 H 1 2.379 1 H11 bmse000730 1 8 1 1 1 H18 H 1 2.379 1 H12 bmse000730 1 9 1 1 1 H12 H 1 1.152 1 H13 bmse000730 1 10 1 1 1 H11 H 1 1.152 1 H14 bmse000730 1 11 1 1 1 H13 H 1 1.152 1 H15 bmse000730 1 12 1 1 1 H15 H 1 1.152 1 H16 bmse000730 1 13 1 1 1 H14 H 1 1.152 1 H17 bmse000730 1 14 1 1 1 H16 H 1 1.152 1 H18 bmse000730 1 stop_ save_ ######################### # Spectral peak lists # ######################### save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000730 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 'Full H' 6493.50649350649 bmse000730 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000730 1 2 $software_2 bmse000730 1 3 $software_3 bmse000730 1 stop_ loop_ _Peak.ID _Peak.Entry_ID _Peak.Spectral_peak_list_ID 1 bmse000730 1 2 bmse000730 1 stop_ loop_ _Peak_general_char.Peak_ID _Peak_general_char.Intensity_val _Peak_general_char.Intensity_val_err _Peak_general_char.Measurement_method _Peak_general_char.Entry_ID _Peak_general_char.Spectral_peak_list_ID 1 2 0.5 integration bmse000730 1 2 6 0.5 integration bmse000730 1 stop_ loop_ _Peak_char.Peak_ID _Peak_char.Spectral_dim_ID _Peak_char.Chem_shift_val _Peak_char.Coupling_pattern _Peak_char.Entry_ID _Peak_char.Spectral_peak_list_ID 1 1 2.379 s bmse000730 1 2 1 1.152 s bmse000730 1 stop_ loop_ _Assigned_peak_chem_shift.Peak_ID _Assigned_peak_chem_shift.Spectral_dim_ID _Assigned_peak_chem_shift.Val _Assigned_peak_chem_shift.Entity_assembly_ID _Assigned_peak_chem_shift.Entity_ID _Assigned_peak_chem_shift.Comp_index_ID _Assigned_peak_chem_shift.Comp_ID _Assigned_peak_chem_shift.Atom_ID _Assigned_peak_chem_shift.Entry_ID _Assigned_peak_chem_shift.Spectral_peak_list_ID 1 1 2.379 1 1 1 1 H17 bmse000730 1 1 1 2.379 1 1 1 1 H18 bmse000730 1 2 1 1.152 1 1 1 1 H11 bmse000730 1 2 1 1.152 1 1 1 1 H12 bmse000730 1 2 1 1.152 1 1 1 1 H13 bmse000730 1 2 1 1.152 1 1 1 1 H14 bmse000730 1 2 1 1.152 1 1 1 1 H15 bmse000730 1 2 1 1.152 1 1 1 1 H16 bmse000730 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse000730 1 2 bmse000730 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 34.911 Height bmse000730 1 2 102.366 Height bmse000730 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 2.379 bmse000730 1 2 1 1.151 bmse000730 1 stop_ save_ save_spectral_peak_13C _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_13C _Spectral_peak_list.Entry_ID bmse000730 _Spectral_peak_list.ID 2 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 3 _Spectral_peak_list.Experiment_name '1D 13C' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 C 13 'Full C' 29761.9047619048 bmse000730 2 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000730 2 2 $software_2 bmse000730 2 3 $software_3 bmse000730 2 stop_ loop_ _Peak.ID _Peak.Entry_ID _Peak.Spectral_peak_list_ID 1 bmse000730 2 2 bmse000730 2 3 bmse000730 2 4 bmse000730 2 5 bmse000730 2 stop_ loop_ _Peak_char.Peak_ID _Peak_char.Spectral_dim_ID _Peak_char.Chem_shift_val _Peak_char.Entry_ID _Peak_char.Spectral_peak_list_ID 1 1 189.856 bmse000730 2 2 1 184.015 bmse000730 2 3 1 50.847 bmse000730 2 4 1 44.708 bmse000730 2 5 1 27.974 bmse000730 2 stop_ loop_ _Assigned_peak_chem_shift.Peak_ID _Assigned_peak_chem_shift.Spectral_dim_ID _Assigned_peak_chem_shift.Val _Assigned_peak_chem_shift.Entity_assembly_ID _Assigned_peak_chem_shift.Entity_ID _Assigned_peak_chem_shift.Comp_index_ID _Assigned_peak_chem_shift.Comp_ID _Assigned_peak_chem_shift.Atom_ID _Assigned_peak_chem_shift.Entry_ID _Assigned_peak_chem_shift.Spectral_peak_list_ID 1 1 189.856 1 1 1 1 C5 bmse000730 2 2 1 184.015 1 1 1 1 C4 bmse000730 2 3 1 50.847 1 1 1 1 C3 bmse000730 2 4 1 44.708 1 1 1 1 C6 bmse000730 2 5 1 27.974 1 1 1 1 C1 bmse000730 2 5 1 27.974 1 1 1 1 C2 bmse000730 2 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse000730 2 2 bmse000730 2 3 bmse000730 2 4 bmse000730 2 5 bmse000730 2 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 10.373 Height bmse000730 2 2 16.992 Height bmse000730 2 3 41.830 Height bmse000730 2 4 36.953 Height bmse000730 2 5 102.827 Height bmse000730 2 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 189.874 bmse000730 2 2 1 184.025 bmse000730 2 3 1 50.860 bmse000730 2 4 1 44.723 bmse000730 2 5 1 27.988 bmse000730 2 stop_ save_ save_spectral_peak_DEPT_135 _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_DEPT_135 _Spectral_peak_list.Entry_ID bmse000730 _Spectral_peak_list.ID 3 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 5 _Spectral_peak_list.Experiment_name '1D DEPT135' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 C 13 'Full C' 29761.9047619048 bmse000730 3 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000730 3 2 $software_2 bmse000730 3 stop_ loop_ _Peak.ID _Peak.Entry_ID _Peak.Spectral_peak_list_ID 1 bmse000730 3 2 bmse000730 3 stop_ loop_ _Peak_char.Peak_ID _Peak_char.Spectral_dim_ID _Peak_char.Chem_shift_val _Peak_char.Phase_val _Peak_char.Entry_ID _Peak_char.Spectral_peak_list_ID 1 1 50.851 negative bmse000730 3 2 1 27.971 positive bmse000730 3 stop_ loop_ _Assigned_peak_chem_shift.Peak_ID _Assigned_peak_chem_shift.Spectral_dim_ID _Assigned_peak_chem_shift.Val _Assigned_peak_chem_shift.Entity_assembly_ID _Assigned_peak_chem_shift.Entity_ID _Assigned_peak_chem_shift.Comp_index_ID _Assigned_peak_chem_shift.Comp_ID _Assigned_peak_chem_shift.Atom_ID _Assigned_peak_chem_shift.Entry_ID _Assigned_peak_chem_shift.Spectral_peak_list_ID 1 1 50.851 1 1 1 1 C3 bmse000730 3 2 1 27.971 1 1 1 1 C1 bmse000730 3 2 1 27.971 1 1 1 1 C2 bmse000730 3 stop_ save_ save_spectral_peak_1H_13C_HSQC _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H_13C_HSQC _Spectral_peak_list.Entry_ID bmse000730 _Spectral_peak_list.ID 4 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 6 _Spectral_peak_list.Experiment_name '2D [1H,13C]-HSQC' _Spectral_peak_list.Number_of_spectral_dimensions 2 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 'Full H' 6493.50649350649 bmse000730 4 2 C 13 'Full C' 18854.049891114 bmse000730 4 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000730 4 stop_ loop_ _Peak.ID _Peak.Entry_ID _Peak.Spectral_peak_list_ID 1 bmse000730 4 2 bmse000730 4 stop_ loop_ _Peak_char.Peak_ID _Peak_char.Spectral_dim_ID _Peak_char.Chem_shift_val _Peak_char.Coupling_pattern _Peak_char.Entry_ID _Peak_char.Spectral_peak_list_ID 1 1 2.381 1JCH bmse000730 4 1 2 50.860 1JCH bmse000730 4 2 1 1.154 1JCH bmse000730 4 2 2 27.983 1JCH bmse000730 4 stop_ loop_ _Assigned_peak_chem_shift.Peak_ID _Assigned_peak_chem_shift.Spectral_dim_ID _Assigned_peak_chem_shift.Val _Assigned_peak_chem_shift.Entity_assembly_ID _Assigned_peak_chem_shift.Entity_ID _Assigned_peak_chem_shift.Comp_index_ID _Assigned_peak_chem_shift.Comp_ID _Assigned_peak_chem_shift.Atom_ID _Assigned_peak_chem_shift.Entry_ID _Assigned_peak_chem_shift.Spectral_peak_list_ID 1 1 2.381 1 1 1 1 H17 bmse000730 4 1 1 2.381 1 1 1 1 H18 bmse000730 4 1 2 50.860 1 1 1 1 C3 bmse000730 4 2 1 1.154 1 1 1 1 H11 bmse000730 4 2 1 1.154 1 1 1 1 H12 bmse000730 4 2 1 1.154 1 1 1 1 H13 bmse000730 4 2 1 1.154 1 1 1 1 H14 bmse000730 4 2 1 1.154 1 1 1 1 H15 bmse000730 4 2 1 1.154 1 1 1 1 H16 bmse000730 4 2 2 27.983 1 1 1 1 C1 bmse000730 4 2 2 27.983 1 1 1 1 C2 bmse000730 4 stop_ save_