Residue-by-residue listing for refined_17 Page 1 ---------------------------------------- This listing highlights the residues in the structure which may need investigation. The ideal values and standard deviations against which the structure has been compared are shown in the following table: <------------------------------- I D E A L V A L U E S -------------------------------> Chi-1 dihedral Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality g(-) trans g(+) Chi-2 phi helix psi rt-hand lf-hand bond dihedral en. C-alpha ------------------------------------------------------------------------------------------ Ideal value 64.1 183.6 -66.7 177.4 -65.4 -65.3 -39.4 96.8 -85.8 2.0 180.0 -2.0 33.9 Standard deviation 15.7 16.8 15.0 18.5 11.2 11.9 11.3 14.8 10.7 .1 5.8 .8 3.5 ------------------------------------------------------------------------------------------ In the listing below, properties that deviate from these values are highlighted by asterisks and plus-signs. Each asterisk represents one standard deviation, and each plus-sign represents half a standard deviation. So, a highlight such as +***, indicates that the value of the parameter is between 3.5 and 4.0 standard deviations from the ideal value shown above. Where the deviation is greater than 4.5 standard deviations its numerical value is shown; for example, *5.5*. The final column gives the maximum deviation in each row, while the maximum column deviations are shown at the end of the listing. Also at the end are the keys to the codes used for the secondary structure and Ramachandran plot assignments. Full print-out. ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - - - -64.2 - - - - - - - 180.4 - 33.6 - 2 ALA 2 B - - - - - - - - - - 179.1 - 34.4 - 3 ASP 3 B - - -71.0 - - - - - - - 179.4 - 33.3 - 4 THR 4 A - - -49.8 - - - - - - - 180.6 -.6 35.4 - * +* +* 5 GLY 5 - - - - - - - - - - - 178.7 - - - 6 GLU 6 S B 65.1 - - - - - - - - - 182.9 - 31.6 - 7 VAL 7 E B - - -62.4 - - - - - - - 180.1 -2.5 32.4 - 8 GLN 8 E B 57.3 - - 185.3 - - - - - - 181.1 - 34.0 - 9 PHE 9 E B - 178.9 - - - - - - - - 178.8 -1.6 35.9 - 10 MET 10 E B 62.8 - - 177.9 - - - - - - 182.6 - 33.2 - 11 LYS 11 E B - 198.9 - - - - - - - - 182.6 -2.1 35.4 - 12 PRO 12 - - - - - -61.5 - - - - - 177.9 - 38.3 - * * 13 PHE 13 B - 182.4 - - - - - - - - 178.0 - 35.2 - 14 ILE 14 h B - - -55.7 176.9 - - - - - - 188.0 -.6 35.0 - * +* +* 15 SER 15 H A - 190.0 - - - -66.7 -11.5 - - - 175.5 - 33.0 - ** ** 16 GLU 16 H A - 182.9 - 179.9 - -61.2 -43.1 - - - 175.6 - 34.5 - 17 LYS 17 H a - - -73.6 - - -108.7 -40.3 - - - 187.7 -1.6 32.9 - +*** * +*** 18 SER 18 H A - - -53.1 - - -74.2 8.6 - - - 169.7 -3.2 31.8 - **** +* +* **** 19 SER 19 h A - 185.1 - - - - - - - - 178.9 -.5 34.3 - +* +* 20 LYS 20 T a - 188.9 - 180.0 - - - - - - 181.8 -2.6 33.5 - Residue-by-residue listing for refined_17 Page 2 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 21 SER 21 t B 56.7 - - - - - - - - - 178.5 -3.0 34.3 - * * 22 LEU 22 E B - - -66.6 179.8 - - - - - - 168.6 -2.7 32.0 - +* +* 23 GLU 23 E B - 177.3 - - - - - - - - 182.7 -.7 36.5 - +* +* 24 ILE 24 e B - - -59.3 178.6 - - - - - - 179.4 -1.3 33.9 - 25 PRO 25 h - - - - - -44.4 - - - - - 182.2 - 39.1 - +* * +* 26 LEU 26 H A - 184.8 - - - -61.8 -46.2 - - - 181.0 - 35.2 - 27 GLY 27 H - - - - - - -64.5 -32.7 - - - 180.7 - - - 28 PHE 28 H A - 182.6 - - - -76.8 -34.9 - - - 178.1 - 33.3 - 29 ASN 29 H A - 179.2 - - - -66.2 -44.6 - - - 181.4 -2.1 34.8 - 30 GLU 30 h A - 184.8 - 175.6 - - - - - - 176.8 -2.4 33.3 - 31 TYR 31 T A - 176.2 - - - - - - - - 178.5 - 33.8 - 32 PHE 32 t b 62.3 - - - - - - - - - 172.3 -2.2 30.4 - * * * 33 PRO 33 - - - - - -83.1 - - - - - 182.1 - 38.6 - +* * +* 34 ALA 34 B - - - - - - - - - - 169.8 - 35.2 - +* +* 35 PRO 35 - - - - - -61.9 - - - - - 185.9 - 38.4 - * * * 36 PHE 36 B 58.0 - - - - - - - - - 179.1 - 33.0 - 37 PRO 37 - - - - - -87.3 - - - - - 177.9 - 39.3 - +* +* +* 38 ILE 38 e A - - -57.2 - - - - - - - 178.3 - 33.5 - 39 THR 39 E B 50.6 - - - - - - - - - 176.4 - 33.4 - 40 VAL 40 E B - - -63.0 - - - - - - - 183.2 -3.5 33.3 - +* +* 41 ASP 41 E B - 186.5 - - - - - - - - 183.4 -1.5 33.3 - 42 LEU 42 E B - - -56.8 181.4 - - - - - - 179.4 -3.2 36.3 - +* +* 43 LEU 43 E B - - -64.3 - - - - - - - 178.8 -2.9 34.2 - * * 44 ASP 44 E B - 146.7 - - - - - - - - 183.8 -2.7 33.4 - ** ** 45 TYR 45 e A - 179.2 - - - - - - - - 179.9 -.8 34.4 - +* +* 46 SER 46 T A - - -44.3 - - - - - - - 178.2 - 35.0 - * * 47 GLY 47 t - - - - - - - - - - - 181.0 -.7 - - +* +* 48 ARG 48 e B - - -60.5 - - - - - - - 177.2 - 34.8 - 49 SER 49 E B 56.3 - - - - - - - - - 180.8 - 34.2 - 50 TRP 50 E B - - -67.1 - - - - - - - 174.0 -2.3 34.5 - * * 51 THR 51 E B - - -57.3 - - - - - - - 186.2 - 34.0 - * * 52 VAL 52 E B - - -61.1 - - - - - - - 182.4 -2.6 33.2 - 53 ARG 53 E B - 180.5 - 159.3 - - - - - - 180.1 - 35.5 - 54 MET 54 e B - 185.2 - 184.5 - - - - - - 180.9 -.9 34.9 - +* +* 55 LYS 55 E B - 192.9 - - - - - - - - 174.3 -2.8 35.2 - 56 LYS 56 E B - - -69.5 181.0 - - - - - - 180.4 - 34.6 - 57 ARG 57 E B - - -64.4 180.9 - - - - - - 181.4 -2.9 34.2 - * * Residue-by-residue listing for refined_17 Page 3 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 58 GLY 58 T - - - - - - - - - - - 177.9 - - - 59 GLU 59 T A - - -59.5 - - - - - - - 180.9 -.7 34.2 - +* +* 60 LYS 60 E B 61.3 - - 167.3 - - - - - - 171.0 -1.3 35.1 - +* * +* 61 VAL 61 E B - - -73.1 - - - - - - - 169.7 - 33.3 - +* +* 62 PHE 62 E B - - -63.9 - - - - - - - 173.1 -2.7 36.3 - * * 63 LEU 63 E B - 191.2 - 164.1 - - - - - - 191.1 -2.5 31.9 - +* +* 64 THR 64 t b 48.5 - - - - - - - - - 191.4 -1.3 31.2 - +* +* 65 VAL 65 T B - 186.4 - - - - - - - - 185.2 - 33.5 - 66 GLY 66 T - - - - - - - - - - - 173.8 -.7 - - * +* +* 67 TRP 67 h A - 170.2 - - - - - - - - 181.9 -1.6 35.9 - 68 GLU 68 H A - 183.9 - 191.0 - -56.5 -32.4 - - - 180.3 -.7 35.6 - +* +* 69 ASN 69 H A - - -60.3 - - -64.5 -35.9 - - - 180.4 -1.7 33.5 - 70 PHE 70 H A - 177.1 - - - -73.5 -50.0 - - - 184.4 -1.1 35.2 - * * 71 VAL 71 H A 73.6 - - - - -61.7 -47.5 - - - 178.7 -2.3 32.5 - 72 LYS 72 H A 66.7 - - 178.5 - -73.1 -30.9 - - - 182.6 -2.9 27.8 - * +* +* 73 ASP 73 H A - 185.6 - - - -73.2 -40.0 - - - 179.8 -1.7 33.3 - 74 ASN 74 H A - 189.0 - - - -87.3 -21.5 - - - 183.9 -2.5 35.3 - +* +* +* 75 ASN 75 h l - 189.7 - - - - - - - - 182.7 -1.3 31.7 - 76 LEU 76 t B 46.3 - - - - - - - - - 182.5 -1.1 30.0 - * * * * 77 GLU 77 t B 54.6 - - 174.6 - - - - - - 177.9 - 34.7 - 78 ASP 78 T B 61.3 - - - - - - - - - 183.8 - 32.3 - 79 GLY 79 T - - - - - - - - - - - 172.2 - - - * * 80 LYS 80 t B - - -62.9 187.7 - - - - - - 183.7 -1.4 33.5 - 81 TYR 81 e B - - -60.9 - - - - - - - 184.2 - 32.7 - 82 LEU 82 E B 43.7 - - - - - - - - - 176.4 -.8 31.5 - * +* +* 83 GLN 83 E B - - -74.6 184.8 - - - - - - 173.0 -2.8 35.0 - * * * 84 PHE 84 E B - - -65.3 - - - - - - - 176.0 -3.0 33.9 - * * 85 ILE 85 E B - - -48.2 179.6 - - - - - - 186.7 -2.8 34.6 - * * * * 86 TYR 86 E B - 174.2 - - - - - - - - 168.7 -3.2 34.9 - +* +* +* 87 ASP 87 e B - 184.1 - - - - - - - - 185.9 -.8 32.4 - * +* +* 88 ARG 88 S b - - -59.7 - - - - - - - 182.9 - 32.3 - 89 ASP 89 S ~b - 188.6 - - - - - - - - 178.6 -.9 35.7 - ** +* ** 90 ARG 90 e A - - -72.2 - - - - - - - 183.5 - 34.1 - 91 THR 91 E B - - -56.8 - - - - - - - 179.4 - 34.9 - 92 PHE 92 E B - - -62.7 - - - - - - - 174.6 -1.9 36.0 - 93 TYR 93 E B - - -53.7 - - - - - - - 181.3 -2.4 34.8 - Residue-by-residue listing for refined_17 Page 4 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 94 VAL 94 E B 59.3 - - - - - - - - - 177.3 -2.9 32.9 - * * 95 ILE 95 E B - 183.4 - 179.8 - - - - - - 182.0 -2.3 32.1 - 96 ILE 96 E B - 182.4 - 179.0 - - - - - - 176.3 - 34.4 - 97 TYR 97 e B - - -70.8 - - - - - - - 186.4 -2.9 33.3 - * * * 98 GLY 98 S - - - - - - - - - - - 174.2 -.8 - - * +* +* 99 HIS 99 b 65.2 - - - - - - - - - 177.8 - 32.0 - 100 ASN 100 B - 182.0 - - - - - - - - 179.7 - 34.5 - 101 MET 101 b - 180.2 - 179.7 - - - - - - 177.7 - 33.1 - 102 CYS 102 - - 186.0 - - - - - - - - - - 34.1 - ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: ** * ** * +* +*** **** +* +* +* **** ----------------------------------------------------------------------------------------------------------------------------------- Mean values: 58.3 182.8 -61.9 178.6 -67.6 -71.3 -33.5 - - - 179.7 -1.9 34.1 Standard deviations: 7.6 8.4 7.2 7.0 17.6 13.0 15.5 - - - 4.5 .9 1.8 Numbers of values: 18 35 35 24 5 15 15 0 0 0 101 58 95 0 KEY TO CODES: ------------ Regions of the Ramachandran plot Secondary structure (extended Kabsch/Sander) -------------------------------- -------------------------------------------- A - Core alpha B - residue in isolated beta-bridge a - Allowed alpha E - extended strand, participates in beta-ladder ~a - Generous alpha ** Generous G - 3-helix (3/10 helix) B - Core beta H - 4-helix (alpha-helix) b - Allowed beta I - 5-helix (pi-helix) ~b - Generous beta ** Generous S - bend L - Core left-handed alpha T - hydrogen-bonded turn l - Allowed left-handed alpha ~l - Generous left-handed alpha ** Generous e - extension of beta-strand p - Allowed epsilon g - extension of 3/10 helix ~p - Generous epsilon ** Generous h - extension of alpha-helix XX - Outside major areas **** Disallowed Residue-by-residue listing for refined_17 Page 5 ---------------------------------------- M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S ..................................... Small molecule data ......................................... <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N --------------------------------------------------------------------------------------------------- Any - 1.231 - - - - - - - - - - ( .020) Pro 1.341 - - - 1.466 122.60 116.90 - - 111.80 103.00 122.00 ( .016) ( .015) ( 5.00) ( 1.50) ( 2.50) ( 1.10) ( 1.40) Except Pro 1.329 - - - - - - - - - - 123.00 ( .014) ( 1.60) Gly - - 1.516 - 1.451 120.60 116.40 120.80 - 112.50 - - ( .018) ( .016) ( 1.70) ( 2.10) ( 2.10) ( 2.90) Except Gly - - 1.525 - - - - 120.80 - - - - ( .021) ( 1.70) Ala - - - 1.521 - - - - 110.50 - 110.40 - ( .033) ( 1.50) ( 1.50) Ile,Thr,Val - - - 1.540 - - - - 109.10 - 111.50 - ( .027) ( 2.20) ( 1.70) Except Gly,Pro - - - - 1.458 121.70 116.20 - - 111.20 - - ( .019) ( 1.80) ( 2.00) ( 2.80) The rest - - - 1.530 - - - - 110.10 - 110.50 - ( .020) ( 1.90) ( 1.70) Note. The table above shows the mean values obtained from small molecule data by Engh & Huber (1991). The values shown in brackets are standard deviations ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - 1.233 1.506 1.543 1.465 - 116.71 120.28 110.01 109.43 112.08 123.01 2 ALA 2 1.309 1.233 1.511 1.520 1.439 122.31 116.13 121.10 110.37 109.78 110.37 122.75 * * * 3 ASP 3 1.295 1.240 1.488 1.532 1.445 121.53 115.83 120.76 110.25 110.34 112.09 123.41 ** +* ** 4 THR 4 1.296 1.241 1.517 1.538 1.424 121.89 115.03 120.88 109.96 108.59 109.91 124.03 ** +* ** 5 GLY 5 1.319 1.246 1.507 - 1.442 121.85 116.45 120.52 - 111.56 - 123.02 6 GLU 6 1.307 1.242 1.519 1.562 1.434 120.80 116.10 121.22 112.66 109.40 112.66 122.67 +* +* * * * +* 7 VAL 7 1.304 1.227 1.505 1.560 1.428 120.77 115.99 121.15 110.77 110.45 113.04 122.85 +* +* +* 8 GLN 8 1.289 1.237 1.509 1.525 1.417 121.13 116.28 120.52 112.14 109.92 109.31 123.20 +** ** * +** 9 PHE 9 1.295 1.232 1.512 1.550 1.440 122.34 117.13 119.90 111.11 108.16 108.17 122.97 ** * * * ** 10 MET 10 1.308 1.238 1.499 1.543 1.447 120.68 116.68 120.55 110.46 108.94 112.53 122.77 * * * * 11 LYS 11 1.295 1.232 1.525 1.562 1.425 119.65 117.81 120.06 112.60 106.98 107.94 122.13 ** +* +* * * +* +* ** 12 PRO 12 1.345 1.247 1.526 1.540 1.467 122.54 115.83 121.43 110.41 112.89 103.86 122.73 Residue-by-residue listing for refined_17 Page 6 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 13 PHE 13 1.302 1.222 1.505 1.547 1.427 121.60 116.91 120.12 110.23 107.47 110.47 122.96 +* +* * +* 14 ILE 14 1.305 1.231 1.503 1.560 1.428 121.41 117.17 119.62 110.13 105.64 111.43 123.22 +* * +* +* +* 15 SER 15 1.320 1.222 1.543 1.543 1.455 122.41 116.04 121.36 112.16 111.36 110.10 122.60 * * 16 GLU 16 1.316 1.231 1.539 1.517 1.443 122.62 117.04 120.74 110.85 109.84 109.54 122.22 17 LYS 17 1.335 1.226 1.490 1.545 1.465 119.44 115.89 120.98 107.50 110.91 115.10 123.08 +* * * +** +** 18 SER 18 1.319 1.213 1.519 1.521 1.440 121.93 116.56 120.59 112.89 113.03 110.29 122.85 * * 19 SER 19 1.316 1.231 1.544 1.538 1.423 121.03 117.01 120.92 110.88 107.90 110.71 122.06 +* * +* 20 LYS 20 1.354 1.236 1.542 1.528 1.453 119.87 117.41 120.02 110.49 112.61 110.46 122.57 +* * +* 21 SER 21 1.327 1.225 1.551 1.541 1.460 121.35 118.14 120.95 110.80 111.35 109.47 120.90 * * * 22 LEU 22 1.309 1.225 1.485 1.523 1.452 119.55 114.46 121.33 108.15 113.45 114.66 124.21 * +* * * ** ** 23 GLU 23 1.291 1.260 1.541 1.542 1.428 122.73 117.25 119.73 110.74 105.24 108.14 122.85 +** * +* ** * +** 24 ILE 24 1.320 1.236 1.537 1.559 1.454 121.46 116.96 120.12 110.67 110.85 110.68 122.89 25 PRO 25 1.365 1.243 1.533 1.517 1.478 124.63 114.60 121.76 109.75 114.51 102.73 123.62 * +* * * +* 26 LEU 26 1.316 1.241 1.532 1.536 1.449 124.18 116.00 120.67 110.31 111.15 108.89 123.33 * * 27 GLY 27 1.327 1.236 1.514 - 1.449 121.13 116.29 120.70 - 112.75 - 123.01 28 PHE 28 1.315 1.214 1.516 1.539 1.449 121.22 116.51 120.60 111.34 109.98 111.00 122.87 * * 29 ASN 29 1.320 1.228 1.522 1.518 1.461 121.40 116.19 120.99 108.30 110.81 111.29 122.81 30 GLU 30 1.329 1.237 1.542 1.535 1.465 122.22 115.16 121.94 112.01 110.49 109.91 122.88 * * 31 TYR 31 1.312 1.235 1.544 1.540 1.430 122.78 117.43 120.50 112.26 110.37 109.30 122.05 * * * * 32 PHE 32 1.339 1.243 1.554 1.564 1.456 120.44 117.55 121.90 112.11 113.57 112.77 120.44 * +* * * +* +* 33 PRO 33 1.333 1.251 1.510 1.518 1.431 121.53 114.44 121.93 109.86 110.45 104.57 123.63 * ** +* * * ** 34 ALA 34 1.273 1.241 1.502 1.532 1.431 123.30 118.98 118.96 110.15 108.48 110.07 122.04 +*** * * * * +*** 35 PRO 35 1.334 1.245 1.531 1.538 1.451 121.19 117.56 119.85 110.77 107.78 104.31 122.60 * +* * +* 36 PHE 36 1.309 1.232 1.535 1.538 1.416 121.38 116.62 121.30 112.33 111.69 109.98 122.01 * ** * ** 37 PRO 37 1.334 1.251 1.520 1.529 1.442 122.75 116.32 121.05 110.42 111.14 102.73 122.61 +* +* 38 ILE 38 1.297 1.237 1.520 1.555 1.433 120.57 116.07 120.76 111.02 108.48 111.83 123.10 ** * ** 39 THR 39 1.311 1.235 1.515 1.555 1.435 121.84 115.46 120.91 109.99 111.12 112.07 123.62 * * * 40 VAL 40 1.301 1.236 1.517 1.568 1.440 123.87 118.04 119.93 110.72 107.23 112.86 122.02 +* * * * +* 41 ASP 41 1.291 1.245 1.513 1.539 1.449 119.72 116.06 120.56 112.32 109.69 110.15 123.37 +** * * +** Residue-by-residue listing for refined_17 Page 7 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 42 LEU 42 1.310 1.240 1.493 1.537 1.442 122.07 116.11 120.58 107.30 109.14 111.05 123.31 * +* * +* 43 LEU 43 1.298 1.223 1.500 1.543 1.431 120.95 115.67 120.78 109.29 110.07 111.99 123.54 ** * * ** 44 ASP 44 1.290 1.242 1.511 1.536 1.442 123.57 114.67 121.05 111.59 110.74 110.45 124.27 +** * +** 45 TYR 45 1.313 1.237 1.541 1.544 1.461 124.60 116.73 120.80 111.18 112.21 108.79 122.47 * +* * +* 46 SER 46 1.315 1.235 1.541 1.523 1.449 121.52 115.65 121.24 110.44 109.19 109.34 123.11 * * 47 GLY 47 1.327 1.227 1.511 - 1.447 121.52 115.89 120.97 - 111.96 - 123.14 48 ARG 48 1.314 1.240 1.527 1.528 1.451 123.08 116.60 120.72 110.45 110.29 109.54 122.61 * * 49 SER 49 1.304 1.239 1.517 1.529 1.441 121.87 116.79 120.11 110.82 109.45 110.30 123.09 +* +* 50 TRP 50 1.303 1.230 1.502 1.533 1.446 121.66 116.12 120.78 108.62 111.42 111.61 123.10 +* * +* 51 THR 51 1.295 1.240 1.530 1.531 1.422 121.22 115.49 121.31 111.19 107.90 110.91 123.19 ** +* * ** 52 VAL 52 1.298 1.224 1.518 1.553 1.438 123.03 116.46 121.00 110.47 110.64 112.07 122.52 ** * ** 53 ARG 53 1.289 1.199 1.515 1.530 1.436 121.75 117.20 119.98 111.25 109.11 108.26 122.79 +** +* * * +** 54 MET 54 1.318 1.238 1.510 1.538 1.463 121.73 118.09 119.64 109.39 108.15 111.12 122.25 * * 55 LYS 55 1.322 1.229 1.542 1.543 1.439 119.64 116.58 120.58 110.46 111.07 108.81 122.84 * * 56 LYS 56 1.329 1.227 1.506 1.539 1.447 121.71 115.83 120.61 108.16 107.86 112.94 123.54 * * * * 57 ARG 57 1.283 1.241 1.507 1.533 1.449 123.25 115.93 120.93 109.08 109.25 112.23 123.13 *** * *** 58 GLY 58 1.293 1.236 1.491 - 1.423 120.58 116.38 120.42 - 110.32 - 123.20 +** * +* +** 59 GLU 59 1.297 1.231 1.521 1.531 1.437 121.34 116.79 120.82 109.72 109.94 111.32 122.39 ** * ** 60 LYS 60 1.319 1.236 1.520 1.529 1.436 121.08 115.17 121.49 108.01 111.27 111.37 123.33 * * * 61 VAL 61 1.301 1.238 1.485 1.556 1.424 122.43 114.60 121.52 107.79 110.46 114.77 123.86 +* +* +* +* +* 62 PHE 62 1.268 1.252 1.474 1.538 1.402 121.69 118.11 119.71 107.61 104.41 112.32 122.16 **** * ** +** * ** * **** 63 LEU 63 1.279 1.215 1.494 1.551 1.419 116.43 114.98 120.82 114.77 103.68 112.35 124.11 +*** * * ** +** ** +** * +*** 64 THR 64 1.303 1.247 1.548 1.537 1.419 123.61 115.20 121.86 113.54 115.79 109.31 122.94 +* * ** * ** +* * ** 65 VAL 65 1.322 1.226 1.506 1.550 1.431 122.86 114.30 121.28 110.96 110.36 111.36 124.41 * * 66 GLY 66 1.290 1.229 1.482 - 1.428 123.33 113.89 121.84 - 107.49 - 124.24 +** +* * +* * +* +** 67 TRP 67 1.337 1.237 1.518 1.532 1.460 123.98 114.61 121.71 109.51 109.91 108.93 123.64 * * 68 GLU 68 1.312 1.206 1.542 1.520 1.440 123.22 116.44 121.03 109.43 110.09 109.28 122.52 * * * 69 ASN 69 1.319 1.199 1.509 1.534 1.463 122.63 116.11 120.69 110.61 110.96 111.00 123.13 +* +* Residue-by-residue listing for refined_17 Page 8 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 70 PHE 70 1.306 1.243 1.499 1.548 1.444 122.87 114.95 121.10 109.73 108.98 110.37 123.93 +* * +* 71 VAL 71 1.328 1.218 1.517 1.574 1.434 121.67 116.55 120.38 111.29 110.45 112.53 123.07 * * * 72 LYS 72 1.321 1.229 1.535 1.555 1.444 120.54 118.13 119.87 113.42 113.90 114.49 121.99 * +* ** ** 73 ASP 73 1.352 1.230 1.504 1.526 1.492 119.23 116.25 120.88 109.09 111.59 112.40 122.86 +* +* * * +* 74 ASN 74 1.309 1.236 1.530 1.548 1.455 120.78 114.18 121.51 111.34 108.25 108.65 124.04 * * * * * 75 ASN 75 1.330 1.242 1.523 1.538 1.468 125.26 115.72 121.55 111.69 110.42 112.65 122.69 +* * +* 76 LEU 76 1.307 1.245 1.528 1.559 1.434 121.01 114.59 121.67 113.78 113.87 111.65 123.74 +* * * +* +* 77 GLU 77 1.305 1.244 1.503 1.526 1.439 124.43 116.25 119.99 109.35 109.15 111.21 123.74 +* * +* +* 78 ASP 78 1.328 1.232 1.517 1.543 1.457 121.51 115.19 121.48 111.39 109.94 112.35 123.30 * * 79 GLY 79 1.294 1.237 1.490 - 1.436 122.01 115.15 121.37 - 108.72 - 123.48 ** * * ** 80 LYS 80 1.317 1.238 1.508 1.535 1.435 121.25 117.76 119.69 110.41 107.09 112.68 122.55 * * * * 81 TYR 81 1.306 1.237 1.488 1.539 1.431 120.37 115.74 120.68 111.88 110.00 111.59 123.58 +* +* * +* 82 LEU 82 1.293 1.245 1.527 1.550 1.421 121.56 114.71 121.44 113.56 113.61 110.10 123.82 +** +* +* +** 83 GLN 83 1.304 1.233 1.496 1.530 1.441 123.63 115.42 120.66 107.61 110.40 112.21 123.92 +* * * * * +* 84 PHE 84 1.296 1.235 1.496 1.532 1.428 122.50 116.24 120.58 109.64 108.39 112.55 123.10 ** * +* * * ** 85 ILE 85 1.293 1.238 1.512 1.548 1.424 120.81 115.92 120.62 110.20 106.10 111.67 123.41 +** +* +* +** 86 TYR 86 1.298 1.236 1.516 1.549 1.435 122.29 115.12 121.40 110.23 112.79 109.25 123.47 ** * ** 87 ASP 87 1.300 1.220 1.501 1.538 1.435 122.28 117.80 118.80 111.22 105.66 114.07 123.40 ** * * * +* ** ** 88 ARG 88 1.305 1.242 1.523 1.562 1.450 122.59 114.76 120.77 111.84 110.19 112.07 124.37 +* +* +* 89 ASP 89 1.329 1.221 1.544 1.560 1.434 125.88 118.31 119.54 111.05 104.41 109.51 122.15 +* * ** * ** ** 90 ARG 90 1.298 1.236 1.519 1.557 1.472 123.10 115.36 121.46 109.35 109.12 112.21 123.15 ** * * ** 91 THR 91 1.307 1.234 1.537 1.544 1.432 122.14 116.10 120.76 110.71 110.71 109.22 123.13 +* * * +* 92 PHE 92 1.323 1.236 1.516 1.539 1.452 122.42 117.00 120.48 107.36 109.31 111.19 122.52 * * 93 TYR 93 1.300 1.224 1.515 1.530 1.445 120.52 117.03 120.14 108.96 107.59 111.74 122.82 ** * ** 94 VAL 94 1.300 1.234 1.529 1.572 1.441 121.52 116.47 120.83 111.07 110.43 112.01 122.64 ** * ** 95 ILE 95 1.302 1.230 1.529 1.568 1.440 121.27 115.72 121.10 111.37 110.01 112.97 123.14 +* * * +* 96 ILE 96 1.298 1.246 1.530 1.572 1.455 123.22 116.37 120.66 110.53 110.35 110.41 122.95 ** * ** Residue-by-residue listing for refined_17 Page 9 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 97 TYR 97 1.322 1.238 1.507 1.534 1.442 121.21 114.02 122.00 110.44 108.67 112.32 123.97 * * * 98 GLY 98 1.290 1.238 1.488 - 1.421 123.26 117.33 119.16 - 106.87 - 123.49 +** +* +* +* +* +** 99 HIS 99 1.317 1.223 1.520 1.560 1.459 122.36 116.60 120.59 110.95 110.51 113.19 122.80 +* +* +* 100 ASN 100 1.301 1.238 1.521 1.544 1.455 121.62 117.14 119.97 110.65 108.68 110.34 122.86 +* +* 101 MET 101 1.318 1.237 1.523 1.541 1.451 121.82 115.34 120.77 110.55 111.01 111.66 123.84 102 CYS 102 1.316 - 1.518 1.542 1.451 124.21 - - 110.40 107.35 111.69 - * * * ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: **** +* ** +* +** +** +* * ** +** +** +* **** ----------------------------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_17 Page 10 ---------------------------------------- A N A L Y S I S O F M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S +------------------+ | BOND LENGTHS | +------------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Bond X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- C-N C-NH1 (except Pro) 1.329 .014 96 1.268 1.354 1.309 .015 **** +* * C-N (Pro) 1.341 .016 5 1.333 1.365 1.342 .012 * C-O C-O 1.231 .020 101 1.199 1.260 1.234 .010 +* * CA-C CH1E-C (except Gly) 1.525 .021 95 1.474 1.554 1.518 .017 ** * CH2G*-C (Gly) 1.516 .018 7 1.482 1.514 1.497 .012 +* * CA-CB CH1E-CH3E (Ala) 1.521 .033 2 1.520 1.532 1.526 .006 CH1E-CH1E (Ile,Thr,Val) 1.540 .027 18 1.531 1.574 1.555 .012 * CH1E-CH2E (the rest) 1.530 .020 75 1.517 1.564 1.539 .011 +* N-CA NH1-CH1E (except Gly,Pro)1.458 .019 90 1.402 1.492 1.442 .015 +** +* NH1-CH2G* (Gly) 1.451 .016 7 1.421 1.449 1.435 .011 +* N-CH1E (Pro) 1.466 .015 5 1.431 1.478 1.454 .017 ** ------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_17 Page 11 ---------------------------------------- +-----------------+ | BOND ANGLES | +-----------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Angle X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- CA-C-N CH1E-C-NH1 (except Gly,Pro)116.2 2.0 89 114.02 118.98 116.24 1.05 * * CH2G*-C-NH1 (Gly) 116.4 2.1 7 113.89 117.33 115.91 1.02 * CH1E-C-N (Pro) 116.9 1.5 5 114.44 117.56 115.75 1.15 +* O-C-N O-C-NH1 (except Pro) 123.0 1.6 96 120.44 124.41 123.04 .68 +* O-C-N (Pro) 122.0 1.4 5 122.60 123.63 123.04 .48 * C-N-CA C-NH1-CH1E (except Gly,Pro)121.7 1.8 89 116.43 125.88 121.87 1.42 +** ** C-NH1-CH2G* (Gly) 120.6 1.7 7 120.58 123.33 121.95 .95 +* C-N-CH1E (Pro) 122.6 5.0 5 121.19 124.63 122.53 1.20 CA-C-O CH1E-C-O (except Gly) 120.8 1.7 94 118.80 122.00 120.75 .65 * CH2G*-C-O (Gly) 120.8 2.1 7 119.16 121.84 120.71 .79 CB-CA-C CH3E-CH1E-C (Ala) 110.5 1.5 2 110.15 110.37 110.26 .11 CH1E-CH1E-C (Ile,Thr,Val) 109.1 2.2 18 107.79 113.54 110.69 1.04 ** CH2E-CH1E-C (the rest) 110.1 1.9 75 107.30 114.77 110.53 1.56 * ** N-CA-C NH1-CH1E-C (except Gly,Pro)111.2 2.8 90 103.68 115.79 109.74 2.15 +** +* NH1-CH2G*-C (Gly) 112.5 2.9 7 106.87 112.75 109.95 2.13 +* N-CH1E-C (Pro) 111.8 2.5 5 107.78 114.51 111.35 2.28 +* * N-CA-CB NH1-CH1E-CH3E (Ala) 110.4 1.5 2 110.07 110.37 110.22 .15 NH1-CH1E-CH1E (Ile,Thr,Val) 111.5 1.7 18 109.22 114.77 111.61 1.37 * +* N-CH1E-CH2E (Pro) 103.0 1.1 5 102.73 104.57 103.64 .77 * NH1-CH1E-CH2E (the rest) 110.5 1.7 70 107.94 115.10 111.03 1.63 +* +** ------------------------------------------------------------------------------------------------------------- The small molecule data used in the above analysis is from Engh & Huber (1991). The atom labelling follows that used in the X-PLOR dictionary, with some additional atoms (marked with an asterisk) as defined by Engh & Huber. Residue-by-residue listing for refined_17 Page 12 ---------------------------------------- R A M A C H A N D R A N P L O T S T A T I S T I C S Residues in most favoured regions [A,B,L] 79 89.8% Residues in additional allowed regions [a,b,l,p] 8 9.1% Residues in generously allowed regions [~a,~b,~l,~p] 1 1.1% Residues in disallowed regions [XX] 0 .0% ---- ------ Number of non-glycine and non-proline residues 88 100.0% Number of end-residues (excl. Gly and Pro) 2 Number of glycine residues 7 Number of proline residues 5 ---- Total number of residues 102 Based on the analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20%, a good quality model would be expected to have over 90% in the most favoured regions [E,H,L]. S T E R E O C H E M I S T R Y O F M A I N - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. %-tage residues in A, B, L 88 89.8 83.8 10.0 .6 Inside b. Omega angle st dev 101 4.5 6.0 3.0 -.5 Inside c. Bad contacts / 100 residues 0 .0 4.2 10.0 -.4 Inside d. Zeta angle st dev 95 1.8 3.1 1.6 -.8 Inside e. H-bond energy st dev 58 .9 .8 .2 .4 Inside f. Overall G-factor 102 -.1 -.4 .3 .9 Inside S T E R E O C H E M I S T R Y O F S I D E - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. Chi-1 gauche minus st dev 18 7.6 18.1 6.5 -1.6 BETTER b. Chi-1 trans st dev 35 8.4 19.0 5.3 -2.0 BETTER c. Chi-1 gauche plus st dev 35 7.2 17.5 4.9 -2.1 BETTER d. Chi-1 pooled st dev 88 8.8 18.2 4.8 -1.9 BETTER e. Chi-2 trans st dev 24 7.0 20.4 5.0 -2.7 BETTER M O R R I S E T A L . C L A S S I F I C A T I O N Mean St.dev Classification Parameter m s 1 2 3 4 Value Class --------- ---- --- ------------------------------------ ----- ----- Phi-psi distribution - - >75.0% >65.0% >55.0% <55.0% 89.8 1 Chi-1 st.dev. 18.2 6.2 <12.0 <18.2 <24.4 >24.4 8.7 1 H-bond energy st dev .87 .24 < .63 < .87 <1.11 >1.11 .90 3 Residue-by-residue listing for refined_17 Page 13 ---------------------------------------- G - F A C T O R S Average Parameter Score Score --------- ----- ----- Dihedral angles:- Phi-psi distribution -.61 Chi1-chi2 distribution -.22 Chi1 only -.39 Chi3 & chi4 .38 Omega -.19 ------ -.27 ===== Main-chain covalent forces:- Main-chain bond lengths -.15 Main-chain bond angles .33 ------ .12 ===== OVERALL AVERAGE -.13 ===== Ideally, scores should be above -0.5. Values below -1.0 may need investigation.