data_bmse000864 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID bmse000864 _Entry.Title uridine _Entry.Version_type update _Entry.Submission_date 2011-11-08 _Entry.Accession_date 2011-11-14 _Entry.Last_release_date 2012-10-17 _Entry.Original_release_date 2011-11-14 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.21 _Entry.Original_NMR_STAR_version 3.1.1.7 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.DOI 10.13018/BMSE000864 _Entry.BMRB_internal_directory_name uridine loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Entry_ID 1 Francisca Jofre F. ? bmse000864 2 Mark Anderson M. E. bmse000864 3 John Markley J. L. bmse000864 stop_ loop_ _Entry_src.ID _Entry_src.Project_name _Entry_src.Organization_full_name _Entry_src.Organization_initials _Entry_src.Entry_ID 1 metabolomics 'Madison Metabolomics Consortium' MMC bmse000864 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID assigned_chemical_shifts 1 bmse000864 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID '13C chemical shifts' 15 bmse000864 '1H chemical shifts' 10 bmse000864 stop_ loop_ _Release.Release_number _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 2011-11-14 2011-11-08 original BMRB 'Original spectra from MMC' bmse000864 2 2011-12-14 2011-11-08 update BMRB 'Set Assembly.Name to match Chem_comp.name' bmse000864 3 2012-09-13 2011-11-08 update BMRB 'Added PubChem SID 126596904 to database loop' bmse000864 4 2012-09-18 2011-11-08 update BMRB 'Fixed bad reference concentrations in sample loops' bmse000864 5 2012-10-12 2011-11-08 update BMRB 'Set assigned_chemical_shifts with data from bmse000158' bmse000864 6 2012-10-17 2011-11-08 update BMRB 'Set all _Chem_comp_SMILES Types to lower case' bmse000864 7 2017-10-12 2017-10-12 update BMRB 'Remediated Experiment_file loop if present and standardized mol and png file tags.' bmse000864 8 2017-12-19 2017-10-12 update BMRB 'InChI numbering updated according to ALATIS' bmse000864 stop_ save_ ############### # Citations # ############### save_citation_1 _Citation.Sf_category citations _Citation.Sf_framecode citation_1 _Citation.Entry_ID bmse000864 _Citation.ID 1 _Citation.Class 'reference citation' _Citation.PubMed_ID 17170002 _Citation.Title 'Database resources of the National Center for Biotechnology Information.' _Citation.Status published _Citation.Type internet _Citation.WWW_URL http://pubchem.ncbi.nlm.nih.gov/ _Citation.Year 2006 loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Entry_ID _Citation_author.Citation_ID 1 D. Wheeler D. L. bmse000864 1 2 T. Barrett T. ? bmse000864 1 3 D. Benson D. A. bmse000864 1 4 S. Bryant S. H. bmse000864 1 5 K. Canese K. ? bmse000864 1 6 V. Chetvenin V. ? bmse000864 1 7 D. Church D. M. bmse000864 1 8 M. DiCuccio M. ? bmse000864 1 9 R. Edgar R. ? bmse000864 1 10 S. Federhen S. ? bmse000864 1 11 L. Geer L. Y. bmse000864 1 12 W. Helmberg W. ? bmse000864 1 13 Y. Kapustin Y. ? bmse000864 1 14 D. Kenton D. L. bmse000864 1 15 O. Khovayko O. ? bmse000864 1 16 D. Lipman D. J. bmse000864 1 17 T. Madden T. L. bmse000864 1 18 D. Maglott D. R. bmse000864 1 19 J. Ostell J. ? bmse000864 1 20 K. Pruitt K. D. bmse000864 1 21 G. Schuler G. D. bmse000864 1 22 L. Schriml L. M. bmse000864 1 23 E. Sequeira E. ? bmse000864 1 24 S. Sherry S. T. bmse000864 1 25 K. Sirotkin K. ? bmse000864 1 26 A. Souvorov A. ? bmse000864 1 27 G. Starchenko G. ? bmse000864 1 28 T. Suzek T. O. bmse000864 1 29 R. Tatusov R. ? bmse000864 1 30 T. Tatusova T. A. bmse000864 1 31 L. Bagner L. ? bmse000864 1 32 E. Yaschenko E. ? bmse000864 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID bmse000864 _Assembly.ID 1 _Assembly.Name Uridine _Assembly.Number_of_components 1 _Assembly.Organic_ligands 0 _Assembly.Non_standard_bonds no _Assembly.Paramagnetic no _Assembly.Thiol_state 'not reported' loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 uridine 1 $uridine yes native no no bmse000864 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_uridine _Entity.Sf_category entity _Entity.Sf_framecode uridine _Entity.Entry_ID bmse000864 _Entity.ID 1 _Entity.Name Uridine _Entity.Type non-polymer _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' loop_ _Entity_comp_index.ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 1 $chem_comp_1 bmse000864 1 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID bmse000864 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $uridine n/a 'multiple natural sources' yes 'not applicable' n/a n/a n/a n/a n/a bmse000864 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID bmse000864 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Production_method _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $uridine 'chemical synthesis' bmse000864 1 stop_ save_ ################################# # Polymer residues and ligands # ################################# save_chem_comp_1 _Chem_comp.Sf_category chem_comp _Chem_comp.Sf_framecode chem_comp_1 _Chem_comp.Entry_ID bmse000864 _Chem_comp.ID 1 _Chem_comp.Provenance PubChem _Chem_comp.Name Uridine _Chem_comp.Type non-polymer _Chem_comp.InChI_code InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1 _Chem_comp.Paramagnetic no _Chem_comp.Aromatic yes _Chem_comp.Formula 'C9 H12 N2 O6' _Chem_comp.Formula_weight 244.2013800000 _Chem_comp.Formula_mono_iso_wt_nat 244.069536128 _Chem_comp.Formula_mono_iso_wt_13C 253.099729668 _Chem_comp.Formula_mono_iso_wt_15N 246.063605915 _Chem_comp.Formula_mono_iso_wt_13C_15N 255.0937994548 _Chem_comp.Image_file_name bmse000864.png _Chem_comp.Image_file_format png _Chem_comp.Struct_file_name bmse000864.mol _Chem_comp.Struct_file_format mol loop_ _Chem_comp_common_name.Name _Chem_comp_common_name.Type _Chem_comp_common_name.Entry_ID _Chem_comp_common_name.Comp_ID 'Uracil, 1-beta-D-ribofuranosyl-' synonym bmse000864 1 1-beta-D-Ribofuranosyluracil synonym bmse000864 1 URIDINE synonym bmse000864 1 Uridin synonym bmse000864 1 'Uracil riboside' synonym bmse000864 1 Uridine synonym bmse000864 1 Urd synonym bmse000864 1 stop_ loop_ _Chem_comp_descriptor.Descriptor _Chem_comp_descriptor.Type _Chem_comp_descriptor.Program _Chem_comp_descriptor.Program_version _Chem_comp_descriptor.Entry_ID _Chem_comp_descriptor.Comp_ID ; InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1 ; INCHI na na bmse000864 1 InChI=1S/C9H12N2O6/c12-3-4-6(14)7(15)8(17-4)11-2-1-5(13)10-9(11)16/h1-2,4,6-8,12,14-15H,3H2,(H,10,13,16)/t4-,6-,7-,8-/m1/s1 INCHI ALATIS 3.003 bmse000864 1 stop_ loop_ _Chem_comp_systematic_name.Name _Chem_comp_systematic_name.Naming_system _Chem_comp_systematic_name.Entry_ID _Chem_comp_systematic_name.Comp_ID 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione IUPAC bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-methylol-tetrahydrofuran-2-yl]pyrimidine-2,4-quinone IUPAC_TRADITIONAL bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione IUPAC_CAS bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl]pyrimidine-2,4-dione IUPAC_OPENEYE bmse000864 1 1-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione IUPAC_SYSTEMATIC bmse000864 1 stop_ loop_ _Chem_comp_SMILES.Type _Chem_comp_SMILES.String _Chem_comp_SMILES.Entry_ID _Chem_comp_SMILES.Comp_ID isomeric C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O bmse000864 1 canonical C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)O bmse000864 1 stop_ loop_ _Chem_comp_atom.Atom_ID _Chem_comp_atom.Type_symbol _Chem_comp_atom.Drawing_2D_coord_x _Chem_comp_atom.Drawing_2D_coord_y _Chem_comp_atom.PDBX_ordinal _Chem_comp_atom.Entry_ID _Chem_comp_atom.Comp_ID H18 H 5.6238 2.2671 1 bmse000864 1 H19 H 5.6238 0.6471 2 bmse000864 1 H23 H 3.1085 -1.9847 3 bmse000864 1 H24 H 2.9734 -1.5691 4 bmse000864 1 H22 H 5.3332 -1.9847 5 bmse000864 1 H25 H 3.6684 -0.2614 6 bmse000864 1 H20 H 4.7514 -3.1625 7 bmse000864 1 H21 H 5.4795 -3.4867 8 bmse000864 1 H26 H 2.8179 2.2671 9 bmse000864 1 H28 H 3.3852 -3.4571 10 bmse000864 1 H29 H 2.0000 -1.2365 11 bmse000864 1 H27 H 6.6676 -3.2878 12 bmse000864 1 C1 C 5.0868 1.9571 13 bmse000864 1 C2 C 5.0868 0.9571 14 bmse000864 1 C5 C 4.2208 2.4571 15 bmse000864 1 C9 C 3.3548 0.9571 16 bmse000864 1 C6 C 3.7208 -2.0817 17 bmse000864 1 C7 C 3.4118 -1.1307 18 bmse000864 1 C4 C 4.7208 -2.0817 19 bmse000864 1 C8 C 4.2208 -0.5429 20 bmse000864 1 C3 C 5.3086 -2.8907 21 bmse000864 1 N10 N 3.3548 1.9571 22 bmse000864 1 N11 N 4.2208 0.4571 23 bmse000864 1 O13 O 4.2208 3.4571 24 bmse000864 1 O16 O 2.4888 0.4571 25 bmse000864 1 O17 O 5.0298 -1.1307 26 bmse000864 1 O14 O 3.1330 -2.8907 27 bmse000864 1 O15 O 2.4607 -0.8216 28 bmse000864 1 O12 O 6.3031 -2.7862 29 bmse000864 1 stop_ loop_ _Atom_nomenclature.Atom_ID _Atom_nomenclature.Atom_name _Atom_nomenclature.Naming_system _Atom_nomenclature.Entry_ID _Atom_nomenclature.Comp_ID H18 H1 BMRB bmse000864 1 H19 H2 BMRB bmse000864 1 H23 H3 BMRB bmse000864 1 H24 H4 BMRB bmse000864 1 H22 H5 BMRB bmse000864 1 H25 H6 BMRB bmse000864 1 H20 H7 BMRB bmse000864 1 H21 H8 BMRB bmse000864 1 H26 H9 BMRB bmse000864 1 H28 H10 BMRB bmse000864 1 H29 H11 BMRB bmse000864 1 H27 H12 BMRB bmse000864 1 C1 C13 BMRB bmse000864 1 C2 C14 BMRB bmse000864 1 C5 C15 BMRB bmse000864 1 C9 C16 BMRB bmse000864 1 C6 C17 BMRB bmse000864 1 C7 C18 BMRB bmse000864 1 C4 C19 BMRB bmse000864 1 C8 C20 BMRB bmse000864 1 C3 C21 BMRB bmse000864 1 N10 N22 BMRB bmse000864 1 N11 N23 BMRB bmse000864 1 O13 O24 BMRB bmse000864 1 O16 O25 BMRB bmse000864 1 O17 O26 BMRB bmse000864 1 O14 O27 BMRB bmse000864 1 O15 O28 BMRB bmse000864 1 O12 O29 BMRB bmse000864 1 H18 H18 ALATIS bmse000864 1 H19 H19 ALATIS bmse000864 1 H23 H23 ALATIS bmse000864 1 H24 H24 ALATIS bmse000864 1 H22 H22 ALATIS bmse000864 1 H25 H25 ALATIS bmse000864 1 H20 H20 ALATIS bmse000864 1 H21 H21 ALATIS bmse000864 1 H26 H26 ALATIS bmse000864 1 H28 H28 ALATIS bmse000864 1 H29 H29 ALATIS bmse000864 1 H27 H27 ALATIS bmse000864 1 C1 C1 ALATIS bmse000864 1 C2 C2 ALATIS bmse000864 1 C5 C5 ALATIS bmse000864 1 C9 C9 ALATIS bmse000864 1 C6 C6 ALATIS bmse000864 1 C7 C7 ALATIS bmse000864 1 C4 C4 ALATIS bmse000864 1 C8 C8 ALATIS bmse000864 1 C3 C3 ALATIS bmse000864 1 N10 N10 ALATIS bmse000864 1 N11 N11 ALATIS bmse000864 1 O13 O13 ALATIS bmse000864 1 O16 O16 ALATIS bmse000864 1 O17 O17 ALATIS bmse000864 1 O14 O14 ALATIS bmse000864 1 O15 O15 ALATIS bmse000864 1 O12 O12 ALATIS bmse000864 1 stop_ loop_ _Chem_comp_bond.ID _Chem_comp_bond.Type _Chem_comp_bond.Value_order _Chem_comp_bond.Atom_ID_1 _Chem_comp_bond.Atom_ID_2 _Chem_comp_bond.Entry_ID _Chem_comp_bond.Comp_ID 1 covalent SING H18 C1 bmse000864 1 2 covalent SING H19 C2 bmse000864 1 3 covalent SING H23 C6 bmse000864 1 4 covalent SING H24 C7 bmse000864 1 5 covalent SING H22 C4 bmse000864 1 6 covalent SING H25 C8 bmse000864 1 7 covalent SING H20 C3 bmse000864 1 8 covalent SING H21 C3 bmse000864 1 9 covalent SING H26 N10 bmse000864 1 10 covalent SING H28 O14 bmse000864 1 11 covalent SING H29 O15 bmse000864 1 12 covalent SING H27 O12 bmse000864 1 13 covalent DOUB C1 C2 bmse000864 1 14 covalent SING C1 C5 bmse000864 1 15 covalent SING C2 N11 bmse000864 1 16 covalent SING C5 N10 bmse000864 1 17 covalent DOUB C5 O13 bmse000864 1 18 covalent SING C9 N10 bmse000864 1 19 covalent SING C9 N11 bmse000864 1 20 covalent DOUB C9 O16 bmse000864 1 21 covalent SING C6 C7 bmse000864 1 22 covalent SING C6 C4 bmse000864 1 23 covalent SING C6 O14 bmse000864 1 24 covalent SING C7 C8 bmse000864 1 25 covalent SING C7 O15 bmse000864 1 26 covalent SING C4 C3 bmse000864 1 27 covalent SING C4 O17 bmse000864 1 28 covalent SING C8 N11 bmse000864 1 29 covalent SING C8 O17 bmse000864 1 30 covalent SING C3 O12 bmse000864 1 stop_ loop_ _Chem_comp_db_link.Author_supplied _Chem_comp_db_link.Database_code _Chem_comp_db_link.Accession_code _Chem_comp_db_link.Accession_code_type _Chem_comp_db_link.Entry_mol_name _Chem_comp_db_link.Entry_relation_type _Chem_comp_db_link.Entry_ID _Chem_comp_db_link.Comp_ID no PubChem 126596904 sid Uridine 'matching entry' bmse000864 1 no PubChem 148890 sid Uridine 'matching entry' bmse000864 1 no PubChem 6029 cid Uridine 'matching entry' bmse000864 1 no PubChem 3593 sid Uridine 'matching entry' bmse000864 1 no KEGG C00299 'compound ID' Uridine 'matching entry' bmse000864 1 no 'CAS Registry' 12693-39-9 'registry number' Uridine 'matching entry' bmse000864 1 no 'CAS Registry' 58-96-8 'registry number' Uridine 'matching entry' bmse000864 1 no 'CAS Registry' 68184-15-6 'registry number' Uridine 'matching entry' bmse000864 1 no CHEBI 16704 ? Uridine 'matching entry' bmse000864 1 no EINECS 200-407-5 ? Uridine 'matching entry' bmse000864 1 no NSC 20256 ? Uridine 'matching entry' bmse000864 1 no PDB URI 'Chemical Component' Uridine 'matching entry' bmse000864 1 stop_ loop_ _Chem_comp_citation.Citation_ID _Chem_comp_citation.Citation_label _Chem_comp_citation.Entry_ID _Chem_comp_citation.Comp_ID 1 $citation_1 bmse000864 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID bmse000864 _Sample.ID 1 _Sample.Type solution loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_units _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Entry_ID _Sample_component.Sample_ID 1 Uridine 'natural abundance' 1 $uridine Solute 100 mM sigma Uridine bmse000864 1 2 D2O ? ? ? Solvent 100 % ? ? bmse000864 1 3 'sodium phosphate' ? ? ? Buffer 50 mM ? ? bmse000864 1 4 'sodium azide' ? ? ? Cytocide 500 uM ? ? bmse000864 1 5 DSS ? ? ? Reference 500 uM ? ? bmse000864 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID bmse000864 _Sample_condition_list.ID 1 loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.4 pH bmse000864 1 temperature 298 K bmse000864 1 stop_ save_ ############################ # Computer software used # ############################ save_software_1 _Software.Sf_category software _Software.Sf_framecode software_1 _Software.Entry_ID bmse000864 _Software.ID 1 _Software.Name TopSpin _Software.Version 2.1 loop_ _Vendor.Name _Vendor.Entry_ID _Vendor.Software_ID 'Bruker Biospin' bmse000864 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID Collection bmse000864 1 Processing bmse000864 1 'Data analysis' bmse000864 1 'Peak picking' bmse000864 1 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_Bruker_DMX_600 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode Bruker_DMX_600 _NMR_spectrometer.Entry_ID bmse000864 _NMR_spectrometer.ID 1 _NMR_spectrometer.Manufacturer Bruker _NMR_spectrometer.Model DMX _NMR_spectrometer.Field_strength 600 save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID bmse000864 _Experiment_list.ID 1 loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '1D 1H' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 2 '2D [1H,1H]-TOCSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 3 '1D DEPT90' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 4 '1D DEPT135' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 5 '2D [1H,13C]-HSQC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 6 '2D [1H,13C]-HMBC' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 7 '2D [1H,1H]-COSY' yes 1 $sample_1 isotropic 1 $sample_conditions_1 1 $Bruker_DMX_600 bmse000864 1 stop_ loop_ _Experiment_file.Experiment_ID _Experiment_file.Name _Experiment_file.Type _Experiment_file.Directory_path _Experiment_file.Details _Experiment_file.Entry_ID _Experiment_file.Experiment_list_ID 1 1H text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 1 00.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000864 1 1 01.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000864 1 1 02.png image/png nmr/set01/spectra/1H 'Spectral image' bmse000864 1 2 HH_TOCSY text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 2 00.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000864 1 2 01.png image/png nmr/set01/spectra/HH_TOCSY 'Spectral image' bmse000864 1 3 DEPT_90 text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 3 00.png image/png nmr/set01/spectra/DEPT_90 'Spectral image' bmse000864 1 3 01.png image/png nmr/set01/spectra/DEPT_90 'Spectral image' bmse000864 1 4 DEPT_135 text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 4 00.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000864 1 4 01.png image/png nmr/set01/spectra/DEPT_135 'Spectral image' bmse000864 1 5 1H_13C_HSQC text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 5 00.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000864 1 5 01.png image/png nmr/set01/spectra/1H_13C_HSQC 'Spectral image' bmse000864 1 6 1H_13C_HMBC text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 6 00.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000864 1 6 01.png image/png nmr/set01/spectra/1H_13C_HMBC 'Spectral image' bmse000864 1 7 HH_COSY text/directory nmr/set01/ 'NMR experiment directory' bmse000864 1 7 00.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000864 1 7 01.png image/png nmr/set01/spectra/HH_COSY 'Spectral image' bmse000864 1 stop_ save_ #################### # NMR parameters # #################### ############################## # Assigned chemical shifts # ############################## ################################ # Chemical shift referencing # ################################ save_chem_shift_reference _Chem_shift_reference.Sf_category chem_shift_reference _Chem_shift_reference.Sf_framecode chem_shift_reference _Chem_shift_reference.Entry_ID bmse000864 _Chem_shift_reference.ID 1 loop_ _Chem_shift_ref.Atom_type _Chem_shift_ref.Atom_isotope_number _Chem_shift_ref.Mol_common_name _Chem_shift_ref.Atom_group _Chem_shift_ref.Chem_shift_units _Chem_shift_ref.Chem_shift_val _Chem_shift_ref.Ref_method _Chem_shift_ref.Ref_type _Chem_shift_ref.Indirect_shift_ratio _Chem_shift_ref.Entry_ID _Chem_shift_ref.Chem_shift_reference_ID H 1 DSS 'methyl protons' ppm 0.00 internal direct 1.000000000 bmse000864 1 C 13 DSS 'methyl carbons' ppm 0.00 internal direct 1.000000000 bmse000864 1 stop_ save_ ################################### # Assigned chemical shift lists # ################################### ################################################################### # Chemical Shift Ambiguity Index Value Definitions # # # # The values other than 1 are used for those atoms with different # # chemical shifts that cannot be assigned to stereospecific atoms # # or to specific residues or chains. # # # # Index Value Definition # # # # 1 Unique (including isolated methyl protons, # # geminal atoms, and geminal methyl # # groups with identical chemical shifts) # # (e.g. ILE HD11, HD12, HD13 protons) # # 2 Ambiguity of geminal atoms or geminal methyl # # proton groups (e.g. ASP HB2 and HB3 # # protons, LEU CD1 and CD2 carbons, or # # LEU HD11, HD12, HD13 and HD21, HD22, # # HD23 methyl protons) # # 3 Aromatic atoms on opposite sides of # # symmetrical rings (e.g. TYR HE1 and HE2 # # protons) # # 4 Intraresidue ambiguities (e.g. LYS HG and # # HD protons or TRP HZ2 and HZ3 protons) # # 5 Interresidue ambiguities (LYS 12 vs. LYS 27) # # 6 Intermolecular ambiguities (e.g. ASP 31 CA # # in monomer 1 and ASP 31 CA in monomer 2 # # of an asymmetrical homodimer, duplex # # DNA assignments, or other assignments # # that may apply to atoms in one or more # # molecule in the molecular assembly) # # 9 Ambiguous, specific ambiguity not defined # # # ################################################################### save_assigned_chemical_shifts _Assigned_chem_shift_list.Sf_category assigned_chemical_shifts _Assigned_chem_shift_list.Sf_framecode assigned_chemical_shifts _Assigned_chem_shift_list.Entry_ID bmse000864 _Assigned_chem_shift_list.ID 1 _Assigned_chem_shift_list.Sample_condition_list_ID 1 _Assigned_chem_shift_list.Sample_condition_list_label $sample_conditions_1 _Assigned_chem_shift_list.Chem_shift_reference_ID 1 _Assigned_chem_shift_list.Chem_shift_reference_label $chem_shift_reference _Assigned_chem_shift_list.Details 'The chemical shift assignments have been taken from BMRB entry bmse000158' loop_ _Atom_chem_shift.ID _Atom_chem_shift.Entity_ID _Atom_chem_shift.Comp_index_ID _Atom_chem_shift.Comp_ID _Atom_chem_shift.Atom_ID _Atom_chem_shift.Atom_type _Atom_chem_shift.Atom_isotope_number _Atom_chem_shift.Val _Atom_chem_shift.Ambiguity_code _Atom_chem_shift.Auth_atom_ID _Atom_chem_shift.Entry_ID _Atom_chem_shift.Assigned_chem_shift_list_ID 1 1 1 1 H18 H 1 5.887 1 H1 bmse000864 1 2 1 1 1 H19 H 1 7.878 1 H2 bmse000864 1 3 1 1 1 H23 H 1 4.222 1 H3 bmse000864 1 4 1 1 1 H24 H 1 4.344 1 H4 bmse000864 1 5 1 1 1 H22 H 1 4.126 1 H5 bmse000864 1 6 1 1 1 H25 H 1 5.908 1 H6 bmse000864 1 7 1 1 1 H20 H 1 3.907 2 H7 bmse000864 1 8 1 1 1 H20 H 1 3.800 2 H7 bmse000864 1 9 1 1 1 H21 H 1 3.907 2 H8 bmse000864 1 10 1 1 1 H21 H 1 3.800 2 H8 bmse000864 1 11 1 1 1 C1 C 13 105.006 1 C13 bmse000864 1 12 1 1 1 C1 C 13 104.980 1 C13 bmse000864 1 13 1 1 1 C2 C 13 144.56 1 C14 bmse000864 1 14 1 1 1 C5 C 13 169.069 1 C15 bmse000864 1 15 1 1 1 C9 C 13 154.475 1 C16 bmse000864 1 16 1 1 1 C6 C 13 72.124 1 C17 bmse000864 1 17 1 1 1 C6 C 13 72.092 1 C17 bmse000864 1 18 1 1 1 C7 C 13 76.443 1 C18 bmse000864 1 19 1 1 1 C7 C 13 76.382 1 C18 bmse000864 1 20 1 1 1 C4 C 13 86.957 1 C19 bmse000864 1 21 1 1 1 C4 C 13 86.895 1 C19 bmse000864 1 22 1 1 1 C8 C 13 92.072 1 C20 bmse000864 1 23 1 1 1 C8 C 13 92.036 1 C20 bmse000864 1 24 1 1 1 C3 C 13 63.476 1 C21 bmse000864 1 25 1 1 1 C3 C 13 63.432 1 C21 bmse000864 1 stop_ loop_ _Ambiguous_atom_chem_shift.Ambiguous_shift_set_ID _Ambiguous_atom_chem_shift.Atom_chem_shift_ID _Ambiguous_atom_chem_shift.Entry_ID _Ambiguous_atom_chem_shift.Assigned_chem_shift_list_ID 1 7 bmse000864 1 1 9 bmse000864 1 2 8 bmse000864 1 2 10 bmse000864 1 stop_ save_ ######################### # Spectral peak lists # ######################### save_spectral_peak_1H _Spectral_peak_list.Sf_category spectral_peak_list _Spectral_peak_list.Sf_framecode spectral_peak_1H _Spectral_peak_list.Entry_ID bmse000864 _Spectral_peak_list.ID 1 _Spectral_peak_list.Sample_ID 1 _Spectral_peak_list.Sample_label $sample_1 _Spectral_peak_list.Sample_condition_list_ID 1 _Spectral_peak_list.Sample_condition_list_label $sample_conditions_1 _Spectral_peak_list.Experiment_ID 1 _Spectral_peak_list.Experiment_name '1D 1H' _Spectral_peak_list.Number_of_spectral_dimensions 1 loop_ _Spectral_dim.ID _Spectral_dim.Atom_type _Spectral_dim.Atom_isotope_number _Spectral_dim.Spectral_region _Spectral_dim.Sweep_width _Spectral_dim.Entry_ID _Spectral_dim.Spectral_peak_list_ID 1 H 1 'Full H' 9615.38461538462 bmse000864 1 stop_ loop_ _Spectral_peak_software.Software_ID _Spectral_peak_software.Software_label _Spectral_peak_software.Entry_ID _Spectral_peak_software.Spectral_peak_list_ID 1 $software_1 bmse000864 1 stop_ loop_ _Spectral_transition.ID _Spectral_transition.Entry_ID _Spectral_transition.Spectral_peak_list_ID 1 bmse000864 1 2 bmse000864 1 3 bmse000864 1 4 bmse000864 1 5 bmse000864 1 6 bmse000864 1 7 bmse000864 1 8 bmse000864 1 9 bmse000864 1 10 bmse000864 1 11 bmse000864 1 12 bmse000864 1 13 bmse000864 1 14 bmse000864 1 15 bmse000864 1 16 bmse000864 1 17 bmse000864 1 18 bmse000864 1 19 bmse000864 1 20 bmse000864 1 21 bmse000864 1 22 bmse000864 1 23 bmse000864 1 24 bmse000864 1 stop_ loop_ _Spectral_transition_general_char.Spectral_transition_ID _Spectral_transition_general_char.Intensity_val _Spectral_transition_general_char.Measurement_method _Spectral_transition_general_char.Entry_ID _Spectral_transition_general_char.Spectral_peak_list_ID 1 4.96 Height bmse000864 1 2 5.17 Height bmse000864 1 3 3.40 Height bmse000864 1 4 3.60 Height bmse000864 1 5 3.53 Height bmse000864 1 6 3.49 Height bmse000864 1 7 2.19 Height bmse000864 1 8 4.16 Height bmse000864 1 9 2.67 Height bmse000864 1 10 2.24 Height bmse000864 1 11 4.45 Height bmse000864 1 12 2.49 Height bmse000864 1 13 1.25 Height bmse000864 1 14 2.41 Height bmse000864 1 15 2.40 Height bmse000864 1 16 1.27 Height bmse000864 1 17 2.11 Height bmse000864 1 18 2.23 Height bmse000864 1 19 3.27 Height bmse000864 1 20 3.28 Height bmse000864 1 21 2.98 Height bmse000864 1 22 3.04 Height bmse000864 1 23 2.16 Height bmse000864 1 24 2.11 Height bmse000864 1 stop_ loop_ _Spectral_transition_char.Spectral_transition_ID _Spectral_transition_char.Spectral_dim_ID _Spectral_transition_char.Chem_shift_val _Spectral_transition_char.Entry_ID _Spectral_transition_char.Spectral_peak_list_ID 1 1 7.8856 bmse000864 1 2 1 7.8721 bmse000864 1 3 1 5.9112 bmse000864 1 4 1 5.9038 bmse000864 1 5 1 5.8934 bmse000864 1 6 1 5.8799 bmse000864 1 7 1 4.3520 bmse000864 1 8 1 4.3437 bmse000864 1 9 1 4.3358 bmse000864 1 10 1 4.2310 bmse000864 1 11 1 4.2219 bmse000864 1 12 1 4.2130 bmse000864 1 13 1 4.1354 bmse000864 1 14 1 4.1280 bmse000864 1 15 1 4.1227 bmse000864 1 16 1 4.1148 bmse000864 1 17 1 3.9191 bmse000864 1 18 1 3.9145 bmse000864 1 19 1 3.8977 bmse000864 1 20 1 3.8932 bmse000864 1 21 1 3.8152 bmse000864 1 22 1 3.8080 bmse000864 1 23 1 3.7939 bmse000864 1 24 1 3.7867 bmse000864 1 stop_ save_