Residue-by-residue listing for refined_15 Page 1 ---------------------------------------- This listing highlights the residues in the structure which may need investigation. The ideal values and standard deviations against which the structure has been compared are shown in the following table: <------------------------------- I D E A L V A L U E S -------------------------------> Chi-1 dihedral Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality g(-) trans g(+) Chi-2 phi helix psi rt-hand lf-hand bond dihedral en. C-alpha ------------------------------------------------------------------------------------------ Ideal value 64.1 183.6 -66.7 177.4 -65.4 -65.3 -39.4 96.8 -85.8 2.0 180.0 -2.0 33.9 Standard deviation 15.7 16.8 15.0 18.5 11.2 11.9 11.3 14.8 10.7 .1 5.8 .8 3.5 ------------------------------------------------------------------------------------------ In the listing below, properties that deviate from these values are highlighted by asterisks and plus-signs. Each asterisk represents one standard deviation, and each plus-sign represents half a standard deviation. So, a highlight such as +***, indicates that the value of the parameter is between 3.5 and 4.0 standard deviations from the ideal value shown above. Where the deviation is greater than 4.5 standard deviations its numerical value is shown; for example, *5.5*. The final column gives the maximum deviation in each row, while the maximum column deviations are shown at the end of the listing. Also at the end are the keys to the codes used for the secondary structure and Ramachandran plot assignments. Full print-out. ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - - 178.1 - 184.1 - - - - - - 178.7 - 33.7 - 2 ALA 2 b - - - - - - - - - - 179.2 - 33.5 - 3 ASP 3 b 68.5 - - - - - - - - - 178.6 - 34.1 - 4 THR 4 A - - -54.1 - - - - - - - 180.5 - 34.6 - 5 GLY 5 - - - - - - - - - - - 178.2 - - - 6 GLU 6 B 58.6 - - 186.5 - - - - - - 183.1 - 34.8 - 7 VAL 7 E B - - -64.7 - - - - - - - 172.7 -2.0 33.6 - * * 8 GLN 8 E B 70.2 - - - - - - - - - 178.4 - 34.5 - 9 PHE 9 E B 59.3 - - - - - - - - - 182.3 -2.4 32.0 - 10 MET 10 E B - 182.5 - - - - - - - - 179.5 - 35.5 - 11 LYS 11 E B 67.2 - - - - - - - - - 179.8 -1.5 33.2 - 12 PRO 12 E - - - - - -70.0 - - - - - 180.4 - 38.5 - * * 13 PHE 13 e B - - -85.7 - - - - - - - 184.3 -3.0 27.2 - * * +* +* 14 ILE 14 h B - - -56.9 176.0 - - - - - - 186.9 - 37.2 - * * 15 SER 15 H A - 185.7 - - - -58.5 -24.8 - - - 179.1 -.6 33.4 - * +* +* 16 GLU 16 H A - 183.9 - 182.1 - -60.5 -39.1 - - - 178.5 - 35.1 - 17 LYS 17 H A - - -101.7 - - -93.1 -41.8 - - - 187.9 -1.8 35.3 - ** ** * ** 18 SER 18 H A 57.6 - - - - -73.5 -5.5 - - - 177.4 -3.0 32.5 - +** * +** 19 SER 19 h A 48.3 - - - - - - - - - 179.1 -1.2 32.4 - * * * 20 LYS 20 T a 61.1 - - - - - - - - - 182.6 -1.9 31.5 - Residue-by-residue listing for refined_15 Page 2 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 21 SER 21 t B 52.9 - - - - - - - - - 176.1 -2.8 35.0 - * * 22 LEU 22 E B - 193.3 - 178.6 - - - - - - 179.1 -1.9 34.7 - 23 GLU 23 E B - 173.7 - 185.6 - - - - - - 173.4 -.7 35.0 - * +* +* 24 ILE 24 e B - - -63.1 182.7 - - - - - - 177.9 -1.0 34.0 - * * 25 PRO 25 h - - - - - -54.4 - - - - - 184.9 - 37.8 - * * 26 LEU 26 H A - 192.4 - 170.8 - -53.0 -33.6 - - - 181.0 - 34.2 - * * 27 GLY 27 H - - - - - - -60.8 -36.5 - - - 179.3 - - - 28 PHE 28 H A - - -62.1 - - -78.0 -36.9 - - - 174.7 -1.5 33.4 - * * 29 ASN 29 H A - 152.9 - - - -57.1 -39.5 - - - 179.5 -1.7 34.7 - +* +* 30 GLU 30 H A - 183.0 - - - -72.8 -35.2 - - - 184.4 -2.4 35.9 - 31 TYR 31 H A - 178.9 - - - -77.0 -28.7 - - - 177.4 -1.4 33.4 - 32 PHE 32 h b 58.9 - - - - - - - - - 173.7 -2.1 28.7 - * * * 33 PRO 33 - - - - - -79.9 - - - - - 183.0 - 38.4 - * * * 34 ALA 34 B - - - - - - - - - - 173.7 - 36.0 - * * 35 PRO 35 - - - - - -60.9 - - - - - 186.4 - 38.9 - * * * 36 PHE 36 B 55.2 - - - - - - - - - 177.7 - 32.0 - 37 PRO 37 - - - - - -83.1 - - - - - 177.7 - 39.0 - +* * +* 38 ILE 38 e A - - -56.4 - - - - - - - 180.7 - 33.3 - 39 THR 39 E B 47.8 - - - - - - - - - 178.5 - 32.8 - * * 40 VAL 40 E B - - -63.7 - - - - - - - 180.3 -3.5 34.0 - ** ** 41 ASP 41 E B - - -65.3 - - - - - - - 177.9 -2.5 32.7 - 42 LEU 42 E B - - -58.1 183.2 - - - - - - 182.5 -3.0 35.4 - * * 43 LEU 43 E B - - -62.6 - - - - - - - 177.4 -3.2 33.7 - +* +* 44 ASP 44 e B - 158.9 - - - - - - - - 183.9 -2.8 35.1 - * * 45 TYR 45 T A - 186.3 - - - - - - - - 180.5 - 34.5 - 46 SER 46 T A - - -53.7 - - - - - - - 177.3 - 34.5 - 47 GLY 47 t - - - - - - - - - - - 178.3 -.7 - - +* +* 48 ARG 48 e B - - -55.8 180.0 - - - - - - 175.8 - 34.8 - 49 SER 49 E B 54.6 - - - - - - - - - 179.9 - 33.5 - 50 TRP 50 E B - - -60.1 - - - - - - - 174.8 -2.6 34.7 - 51 THR 51 E B - - -57.0 - - - - - - - 185.0 - 34.2 - 52 VAL 52 E B - 177.1 - - - - - - - - 179.8 -3.0 34.8 - * * 53 ARG 53 E B - - -65.3 182.7 - - - - - - 181.1 - 34.2 - 54 MET 54 e B - 176.2 - 182.1 - - - - - - 178.5 -.7 35.6 - +* +* 55 LYS 55 E B - 184.7 - - - - - - - - 174.0 -1.2 33.7 - * * * 56 LYS 56 E B - 178.1 - 168.9 - - - - - - 182.0 - 32.1 - Residue-by-residue listing for refined_15 Page 3 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 57 ARG 57 E b - 189.6 - - - - - - - - 178.5 -2.9 34.3 - * * 58 GLY 58 T - - - - - - - - - - - 186.4 -.5 - - * ** ** 59 GLU 59 T A - - -60.9 - - - - - - - 180.2 - 33.6 - 60 LYS 60 E B 58.5 - - - - - - - - - 175.0 -2.0 32.1 - 61 VAL 61 E B - 178.2 - - - - - - - - 174.8 - 34.6 - 62 PHE 62 E B - - -67.7 - - - - - - - 175.6 -2.3 34.8 - 63 LEU 63 E B - - -68.3 - - - - - - - 184.9 -2.5 30.7 - 64 THR 64 t b 49.9 - - - - - - - - - 186.1 -.7 34.2 - * +* +* 65 VAL 65 T B - 178.1 - - - - - - - - 186.9 - 32.5 - * * 66 GLY 66 h - - - - - - - - - - - 171.6 - - - * * 67 TRP 67 H A - 162.4 - - - -58.4 -24.1 - - - 182.8 -1.7 36.0 - * * * 68 GLU 68 H A - 182.1 - 181.6 - -58.0 -34.9 - - - 178.5 - 34.8 - 69 ASN 69 H A - - -62.7 - - -57.9 -46.2 - - - 182.2 -1.5 34.0 - 70 PHE 70 H A - 177.5 - - - -73.6 -43.4 - - - 182.4 -.6 33.1 - +* +* 71 VAL 71 H A 77.1 - - - - -63.4 -39.8 - - - 177.1 -2.5 33.1 - 72 LYS 72 H A - 178.5 - 173.0 - -71.6 -48.0 - - - 186.6 -2.6 34.3 - * * 73 ASP 73 H A - 184.6 - - - -76.6 -33.3 - - - 176.8 -3.0 31.8 - * * 74 ASN 74 H A - 189.8 - - - -87.7 -20.6 - - - 183.4 -3.1 34.4 - +* +* * +* 75 ASN 75 h l - 180.2 - - - - - - - - 181.8 -.6 30.5 - +* +* 76 LEU 76 t B - - -62.0 176.9 - - - - - - 182.5 -2.0 34.2 - 77 GLU 77 t B - - -58.4 182.0 - - - - - - 174.9 - 35.9 - 78 ASP 78 T B - 180.7 - - - - - - - - 178.5 - 35.6 - 79 GLY 79 T - - - - - - - - - - - 177.5 -3.0 - - * * 80 LYS 80 e B - - -55.8 - - - - - - - 181.9 -1.6 34.2 - 81 TYR 81 E B - - -58.3 - - - - - - - 180.9 -1.8 35.2 - 82 LEU 82 E B - - -58.0 180.1 - - - - - - 174.2 -1.4 35.0 - * * 83 GLN 83 E B - 180.9 - 181.2 - - - - - - 181.7 -2.6 34.6 - 84 PHE 84 E B - - -60.9 - - - - - - - 175.0 -3.5 35.6 - +* +* 85 ILE 85 E B - - -56.8 177.7 - - - - - - 181.7 -3.0 34.8 - * * 86 TYR 86 E B - 181.3 - - - - - - - - 181.9 -3.1 35.6 - * * 87 ASP 87 e A 63.7 - - - - - - - - - 179.9 -1.0 34.1 - * * 88 ARG 88 S ~l - 186.7 - 177.7 - - - - - - 177.7 - 30.2 - ** * ** 89 ASP 89 S XX - 184.0 - - - - - - - - 169.5 - 32.9 - **** +* **** 90 ARG 90 e a 75.4 - - 180.1 - - - - - - 188.0 - 34.1 - * * 91 THR 91 E B 40.8 - - - - - - - - - 177.3 - 34.5 - * * 92 PHE 92 E B - - -60.1 - - - - - - - 176.0 -2.5 36.0 - Residue-by-residue listing for refined_15 Page 4 ---------------------------------------- ................................................................................................................................... Residue Kabsch Region --------- Sander of No. Type Seq sec Ramch. Chi-1 dihedral Chi-2 Proline Phi Helix Chi-3 Chi-3 Disulph Omega H-bond Chirality Bad Max Chain no. struc plot g(-) trans g(+) trans phi helix psi rt-hand lf-hand bond dihedral en. C-alpha contacts dev ----------------------------------------------------------------------------------------------------------------------------------- 93 TYR 93 E B - - -65.3 - - - - - - - 187.4 -3.2 33.6 - * +* +* 94 VAL 94 E B - 187.9 - - - - - - - - 173.8 -2.8 34.6 - * * 95 ILE 95 E B - - -65.1 - - - - - - - 182.2 -3.2 33.6 - * * 96 ILE 96 E B - - -53.9 - - - - - - - 172.9 -.6 35.9 - * +* +* 97 TYR 97 E B 69.1 - - - - - - - - - 186.6 -2.6 29.6 - * * * 98 GLY 98 S - - - - - - - - - - - 178.5 - - - 99 HIS 99 S b - 177.1 - - - - - - - - 175.7 - 34.2 - 100 ASN 100 B - - -66.3 - - - - - - - 179.3 - 34.1 - 101 MET 101 B - - -76.0 - - - - - - - 182.1 - 33.0 - 102 CYS 102 - - 186.0 - - - - - - - - - -.6 34.1 - +* +* ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: **** * +* ** +* ** +** +* ** +* **** ----------------------------------------------------------------------------------------------------------------------------------- Mean values: 59.7 180.3 -63.0 179.7 -69.7 -68.4 -34.0 - - - 179.6 -2.0 34.1 Standard deviations: 9.5 8.6 9.4 4.5 12.2 11.4 10.3 - - - 4.0 .9 1.9 Numbers of values: 20 34 34 22 5 18 18 0 0 0 101 59 95 0 KEY TO CODES: ------------ Regions of the Ramachandran plot Secondary structure (extended Kabsch/Sander) -------------------------------- -------------------------------------------- A - Core alpha B - residue in isolated beta-bridge a - Allowed alpha E - extended strand, participates in beta-ladder ~a - Generous alpha ** Generous G - 3-helix (3/10 helix) B - Core beta H - 4-helix (alpha-helix) b - Allowed beta I - 5-helix (pi-helix) ~b - Generous beta ** Generous S - bend L - Core left-handed alpha T - hydrogen-bonded turn l - Allowed left-handed alpha ~l - Generous left-handed alpha ** Generous e - extension of beta-strand p - Allowed epsilon g - extension of 3/10 helix ~p - Generous epsilon ** Generous h - extension of alpha-helix XX - Outside major areas **** Disallowed Residue-by-residue listing for refined_15 Page 5 ---------------------------------------- M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S ..................................... Small molecule data ......................................... <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N --------------------------------------------------------------------------------------------------- Any - 1.231 - - - - - - - - - - ( .020) Pro 1.341 - - - 1.466 122.60 116.90 - - 111.80 103.00 122.00 ( .016) ( .015) ( 5.00) ( 1.50) ( 2.50) ( 1.10) ( 1.40) Except Pro 1.329 - - - - - - - - - - 123.00 ( .014) ( 1.60) Gly - - 1.516 - 1.451 120.60 116.40 120.80 - 112.50 - - ( .018) ( .016) ( 1.70) ( 2.10) ( 2.10) ( 2.90) Except Gly - - 1.525 - - - - 120.80 - - - - ( .021) ( 1.70) Ala - - - 1.521 - - - - 110.50 - 110.40 - ( .033) ( 1.50) ( 1.50) Ile,Thr,Val - - - 1.540 - - - - 109.10 - 111.50 - ( .027) ( 2.20) ( 1.70) Except Gly,Pro - - - - 1.458 121.70 116.20 - - 111.20 - - ( .019) ( 1.80) ( 2.00) ( 2.80) The rest - - - 1.530 - - - - 110.10 - 110.50 - ( .020) ( 1.90) ( 1.70) Note. The table above shows the mean values obtained from small molecule data by Engh & Huber (1991). The values shown in brackets are standard deviations ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 1 MET 1 - 1.230 1.515 1.543 1.465 - 116.40 120.58 110.56 109.69 111.27 123.00 2 ALA 2 1.318 1.231 1.506 1.526 1.435 122.51 115.75 120.95 110.73 109.16 111.65 123.21 * * 3 ASP 3 1.293 1.235 1.519 1.554 1.446 122.22 117.83 119.58 111.32 107.66 110.77 122.58 +** * * +** 4 THR 4 1.314 1.244 1.538 1.538 1.453 121.33 114.85 121.66 110.05 110.24 110.22 123.43 * * 5 GLY 5 1.300 1.240 1.503 - 1.428 122.35 115.23 121.12 - 112.72 - 123.65 ** * * ** 6 GLU 6 1.299 1.244 1.515 1.533 1.438 122.87 117.33 120.41 111.17 107.92 109.66 122.25 ** * * ** 7 VAL 7 1.297 1.228 1.507 1.577 1.446 120.47 115.96 121.06 109.06 111.44 112.86 122.95 ** * ** 8 GLN 8 1.293 1.236 1.510 1.554 1.388 122.25 117.37 120.07 110.30 106.90 111.99 122.55 +** * +*** +* +*** 9 PHE 9 1.288 1.220 1.498 1.551 1.436 120.77 116.09 120.63 112.12 110.26 112.20 123.28 +** * * * * * +** 10 MET 10 1.292 1.232 1.495 1.548 1.434 122.48 116.85 120.05 111.44 107.68 108.75 123.08 +** * * * * +** 11 LYS 11 1.301 1.242 1.538 1.558 1.428 120.77 118.43 119.69 113.48 109.58 109.44 121.85 +* * +* * +* +* 12 PRO 12 1.349 1.250 1.525 1.540 1.463 122.50 116.42 121.19 110.16 111.57 104.09 122.39 Residue-by-residue listing for refined_15 Page 6 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 13 PHE 13 1.304 1.234 1.490 1.515 1.427 120.87 113.41 121.96 114.35 114.98 113.57 124.63 +* +* +* * ** * +* * ** 14 ILE 14 1.309 1.242 1.501 1.562 1.425 124.83 116.93 119.25 108.93 105.91 109.30 123.82 * * +* +* +* * +* 15 SER 15 1.325 1.218 1.530 1.533 1.467 122.60 116.06 121.00 110.49 111.64 110.90 122.92 16 GLU 16 1.314 1.227 1.529 1.513 1.443 122.57 116.18 121.20 109.98 109.95 109.51 122.61 * * 17 LYS 17 1.316 1.240 1.496 1.530 1.451 121.02 115.80 120.44 107.87 111.25 111.27 123.65 * * * 18 SER 18 1.315 1.219 1.508 1.522 1.437 122.10 116.61 120.49 112.35 112.84 109.98 122.89 * * * 19 SER 19 1.309 1.237 1.533 1.528 1.432 120.65 117.34 120.42 112.31 111.69 110.65 122.24 * * * * 20 LYS 20 1.340 1.227 1.528 1.541 1.440 119.83 116.47 120.52 113.15 113.65 110.22 123.01 * +* +* 21 SER 21 1.306 1.230 1.529 1.528 1.463 121.32 116.34 121.00 109.68 112.84 109.11 122.66 +* +* 22 LEU 22 1.315 1.243 1.512 1.554 1.450 120.96 115.77 120.68 110.03 106.62 111.55 123.54 * +* +* 23 GLU 23 1.296 1.241 1.523 1.532 1.435 122.09 116.50 120.44 109.52 110.69 110.12 123.03 ** * ** 24 ILE 24 1.311 1.238 1.517 1.565 1.441 121.11 118.15 119.66 109.69 107.67 112.80 122.11 * * * 25 PRO 25 1.344 1.253 1.535 1.527 1.457 122.37 115.16 120.90 111.27 111.32 103.91 123.94 * * * * 26 LEU 26 1.323 1.231 1.539 1.562 1.459 124.72 116.57 120.37 112.41 111.24 108.36 123.01 +* +* * * +* 27 GLY 27 1.326 1.234 1.525 - 1.451 121.65 117.09 120.39 - 113.55 - 122.49 28 PHE 28 1.328 1.223 1.510 1.526 1.454 121.07 114.82 121.38 111.16 109.34 111.09 123.77 29 ASN 29 1.312 1.234 1.533 1.538 1.461 123.44 115.28 121.23 111.15 111.30 108.60 123.50 * * * 30 GLU 30 1.315 1.239 1.537 1.541 1.444 123.01 115.52 121.13 110.15 109.76 108.45 123.31 * * * 31 TYR 31 1.329 1.234 1.538 1.546 1.455 122.56 118.01 120.04 111.53 112.78 109.65 121.93 32 PHE 32 1.320 1.229 1.531 1.569 1.452 119.61 117.19 121.62 112.96 113.80 114.05 121.12 +* * +* ** * ** 33 PRO 33 1.334 1.243 1.513 1.529 1.434 122.18 115.63 121.45 110.17 110.61 104.68 122.91 ** +* ** 34 ALA 34 1.277 1.238 1.495 1.524 1.424 122.20 118.26 119.14 109.68 108.30 109.30 122.57 +*** * +* * * +*** 35 PRO 35 1.345 1.237 1.512 1.529 1.452 121.60 117.21 119.93 110.03 107.98 104.23 122.86 +* * +* 36 PHE 36 1.296 1.231 1.537 1.528 1.403 121.90 116.18 121.32 112.81 113.51 110.06 122.48 ** +** * +** 37 PRO 37 1.341 1.232 1.519 1.527 1.451 123.62 117.17 120.46 110.56 110.36 103.19 122.26 38 ILE 38 1.295 1.240 1.536 1.554 1.439 120.45 116.35 120.87 110.71 109.73 111.85 122.74 ** ** 39 THR 39 1.320 1.236 1.536 1.556 1.450 121.91 114.77 121.37 110.08 112.83 112.03 123.86 40 VAL 40 1.318 1.231 1.523 1.560 1.455 125.55 118.03 119.62 109.46 107.86 112.66 122.30 ** * ** 41 ASP 41 1.301 1.241 1.507 1.551 1.459 120.42 115.72 120.97 110.06 111.01 112.97 123.31 ** * * ** 42 LEU 42 1.307 1.234 1.502 1.536 1.443 122.29 116.32 120.43 108.38 107.82 111.63 123.25 +* * * +* Residue-by-residue listing for refined_15 Page 7 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 43 LEU 43 1.297 1.242 1.511 1.547 1.430 121.53 114.25 121.41 109.46 111.57 112.10 124.34 ** * ** 44 ASP 44 1.297 1.237 1.519 1.526 1.449 124.62 115.22 120.96 110.65 110.65 108.75 123.81 ** +* * ** 45 TYR 45 1.315 1.227 1.542 1.541 1.456 124.04 117.30 120.52 110.60 111.72 109.38 122.17 * * 46 SER 46 1.322 1.243 1.532 1.521 1.450 121.27 116.07 121.11 110.20 110.21 110.05 122.82 47 GLY 47 1.321 1.237 1.512 - 1.437 120.65 117.45 120.10 - 113.50 - 122.44 48 ARG 48 1.325 1.237 1.523 1.535 1.461 120.34 116.63 120.62 108.18 109.40 112.06 122.75 * * 49 SER 49 1.302 1.240 1.517 1.541 1.432 121.70 116.48 120.32 111.89 109.54 110.54 123.16 +* * +* 50 TRP 50 1.307 1.227 1.506 1.534 1.463 121.56 116.53 120.36 108.25 110.80 111.69 123.10 +* +* 51 THR 51 1.303 1.240 1.534 1.527 1.429 121.32 114.72 121.69 110.76 108.95 110.62 123.59 +* +* +* 52 VAL 52 1.293 1.220 1.525 1.569 1.437 123.98 116.77 120.64 110.93 109.35 109.83 122.58 +** * * * +** 53 ARG 53 1.295 1.209 1.508 1.527 1.430 122.11 115.93 120.71 112.05 109.47 109.30 123.30 ** * * * ** 54 MET 54 1.306 1.215 1.502 1.537 1.457 123.01 118.29 119.26 109.83 108.28 109.66 122.42 +* * * * +* 55 LYS 55 1.323 1.234 1.521 1.535 1.436 119.42 115.48 121.14 111.06 112.07 110.11 123.38 * * * 56 LYS 56 1.306 1.234 1.477 1.528 1.442 122.43 114.44 121.36 110.87 108.57 113.85 124.17 +* ** +* ** 57 ARG 57 1.253 1.220 1.499 1.562 1.423 122.46 115.83 120.33 112.13 107.09 110.23 123.73 *5.5* * +* +* * * *5.5* 58 GLY 58 1.306 1.228 1.508 - 1.435 121.54 115.76 120.89 - 113.28 - 123.21 +* +* 59 GLU 59 1.311 1.219 1.528 1.550 1.444 121.82 118.94 119.36 108.63 112.96 112.30 121.69 * * * * 60 LYS 60 1.326 1.242 1.529 1.539 1.445 119.70 114.98 121.23 109.76 114.04 112.69 123.78 * * * * 61 VAL 61 1.333 1.241 1.521 1.564 1.457 123.91 115.64 120.85 107.14 109.63 113.59 123.50 * * * 62 PHE 62 1.298 1.241 1.490 1.543 1.437 123.27 117.16 120.18 108.86 107.68 112.33 122.62 ** +* * * * ** 63 LEU 63 1.291 1.223 1.486 1.544 1.435 118.96 115.19 120.49 112.00 108.54 114.85 124.30 +** +* * +* +** +** 64 THR 64 1.298 1.254 1.545 1.538 1.426 124.00 115.86 121.53 111.70 112.91 108.46 122.62 ** * +* * * +* ** 65 VAL 65 1.324 1.223 1.517 1.553 1.440 121.74 114.24 121.57 111.90 110.22 111.71 124.18 * * 66 GLY 66 1.292 1.224 1.482 - 1.431 123.25 113.92 121.91 - 107.52 - 124.15 +** +* * +* * +* +** 67 TRP 67 1.337 1.245 1.516 1.543 1.463 123.71 113.51 122.22 109.91 109.16 108.69 124.21 * * * * 68 GLU 68 1.303 1.207 1.536 1.518 1.427 123.98 116.83 120.37 111.19 110.54 108.66 122.77 +* * +* * * +* 69 ASN 69 1.327 1.200 1.507 1.544 1.463 122.66 116.27 120.66 108.90 110.73 112.17 123.02 +* +* 70 PHE 70 1.303 1.231 1.511 1.535 1.439 122.43 116.90 120.07 110.86 111.34 111.37 123.01 +* * +* Residue-by-residue listing for refined_15 Page 8 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 71 VAL 71 1.333 1.224 1.520 1.573 1.460 120.41 114.47 121.63 110.53 109.11 112.66 123.90 * * 72 LYS 72 1.305 1.235 1.539 1.531 1.416 124.07 117.09 120.59 111.74 112.15 108.53 122.31 +* ** * * ** 73 ASP 73 1.325 1.222 1.515 1.521 1.474 120.85 117.68 120.57 111.09 113.47 111.77 121.76 74 ASN 74 1.306 1.229 1.519 1.535 1.455 119.24 114.29 121.30 109.98 108.19 111.25 124.23 +* * * +* 75 ASN 75 1.333 1.240 1.521 1.531 1.460 125.44 114.99 121.86 112.51 111.60 112.97 123.11 ** * * ** 76 LEU 76 1.310 1.243 1.503 1.518 1.437 122.40 114.83 121.26 110.02 110.97 110.68 123.91 * * * * 77 GLU 77 1.300 1.245 1.510 1.526 1.437 123.90 116.20 120.23 108.79 108.80 110.07 123.55 ** * * ** 78 ASP 78 1.312 1.232 1.514 1.529 1.459 122.19 116.69 120.38 108.66 109.58 110.31 122.91 * * 79 GLY 79 1.303 1.230 1.505 - 1.436 119.95 117.11 120.25 - 113.05 - 122.63 +* +* 80 LYS 80 1.327 1.244 1.527 1.537 1.459 120.65 117.53 120.08 109.34 108.51 112.02 122.39 81 TYR 81 1.319 1.240 1.495 1.522 1.442 120.53 116.46 120.55 108.83 109.34 110.95 122.99 * * 82 LEU 82 1.296 1.241 1.494 1.522 1.428 120.68 115.55 120.80 108.78 110.44 111.15 123.63 ** * +* ** 83 GLN 83 1.294 1.228 1.517 1.534 1.423 121.77 116.41 120.33 110.66 107.26 110.78 123.25 ** +* * ** 84 PHE 84 1.292 1.228 1.496 1.534 1.437 122.26 116.42 120.15 108.57 109.81 110.70 123.41 +** * * +** 85 ILE 85 1.296 1.233 1.507 1.544 1.436 121.37 116.21 120.68 109.12 107.35 112.10 123.08 ** * * ** 86 TYR 86 1.288 1.235 1.521 1.541 1.423 121.81 116.22 120.65 112.07 108.83 107.49 123.13 +** +* * +* +** 87 ASP 87 1.326 1.228 1.514 1.537 1.477 122.24 114.56 121.26 109.61 110.57 111.20 124.17 88 ARG 88 1.312 1.240 1.529 1.532 1.445 124.73 114.34 121.78 112.26 112.69 113.14 123.86 * +* * +* +* 89 ASP 89 1.317 1.224 1.530 1.553 1.461 125.13 117.45 120.15 111.46 107.02 112.43 122.40 * +* * * +* 90 ARG 90 1.316 1.227 1.534 1.538 1.456 121.63 115.39 121.59 109.96 108.46 111.63 123.01 91 THR 91 1.311 1.235 1.525 1.533 1.434 122.76 115.20 121.30 110.77 113.82 108.68 123.50 * * +* +* 92 PHE 92 1.321 1.228 1.522 1.540 1.450 122.90 117.28 120.21 107.60 108.72 111.15 122.50 * * 93 TYR 93 1.301 1.232 1.504 1.535 1.456 121.45 116.48 120.34 111.21 108.24 111.24 123.17 +* * +* 94 VAL 94 1.306 1.230 1.524 1.552 1.444 121.12 115.70 121.25 108.75 111.96 111.31 123.03 +* +* 95 ILE 95 1.306 1.242 1.523 1.582 1.441 122.38 116.15 120.51 109.58 107.61 113.57 123.33 +* +* * * +* 96 ILE 96 1.307 1.238 1.508 1.589 1.449 122.44 117.18 119.83 106.73 108.49 112.87 122.97 +* +* * +* 97 TYR 97 1.312 1.242 1.511 1.551 1.432 119.88 116.51 120.66 113.65 109.02 114.43 122.81 * * * * +* ** ** 98 GLY 98 1.303 1.229 1.512 - 1.442 120.48 114.65 121.59 - 109.33 - 123.73 +* * +* 99 HIS 99 1.326 1.221 1.507 1.550 1.443 124.51 116.30 120.54 109.79 108.87 111.77 123.14 +* +* Residue-by-residue listing for refined_15 Page 9 ---------------------------------------- ................................................................................................................................... Residue ------------- <---------- Bond lengths ----------> <---------------------- Bond angles ----------------------> No. Type Seq Max Chain no. C-N C-O CA-C CA-CB N-CA C-N-CA CA-C-N CA-C-O CB-CA-C N-CA-C N-CA-CB O-C-N dev ----------------------------------------------------------------------------------------------------------------------------------- 100 ASN 100 1.289 1.236 1.504 1.540 1.440 121.68 117.12 119.92 110.38 108.02 111.58 122.92 +** * +** 101 MET 101 1.319 1.235 1.511 1.548 1.449 120.93 116.29 120.85 110.22 109.50 112.91 122.85 * * 102 CYS 102 1.294 - 1.510 1.543 1.425 121.62 - - 111.54 108.27 110.44 - ** +* * ** ----------------------------------------------------------------------------------------------------------------------------------- Max deviations: *5.5* +* ** +* +*** ** * ** +* +** * *5.5* ----------------------------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_15 Page 10 ---------------------------------------- A N A L Y S I S O F M A I N C H A I N B O N D L E N G T H S A N D B O N D A N G L E S +------------------+ | BOND LENGTHS | +------------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Bond X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- C-N C-NH1 (except Pro) 1.329 .014 96 1.253 1.340 1.309 .014 *5.5* * C-N (Pro) 1.341 .016 5 1.334 1.349 1.343 .005 C-O C-O 1.231 .020 101 1.200 1.254 1.233 .009 +* * CA-C CH1E-C (except Gly) 1.525 .021 95 1.477 1.545 1.517 .014 ** CH2G*-C (Gly) 1.516 .018 7 1.482 1.525 1.507 .012 +* CA-CB CH1E-CH3E (Ala) 1.521 .033 2 1.524 1.526 1.525 .001 CH1E-CH1E (Ile,Thr,Val) 1.540 .027 18 1.527 1.589 1.558 .017 +* CH1E-CH2E (the rest) 1.530 .020 75 1.513 1.569 1.537 .011 +* N-CA NH1-CH1E (except Gly,Pro)1.458 .019 90 1.388 1.477 1.443 .015 +*** NH1-CH2G* (Gly) 1.451 .016 7 1.428 1.451 1.437 .007 * N-CH1E (Pro) 1.466 .015 5 1.434 1.463 1.451 .010 ** ------------------------------------------------------------------------------------------------------------- Residue-by-residue listing for refined_15 Page 11 ---------------------------------------- +-----------------+ | BOND ANGLES | +-----------------+ ------------------------------------------------------------------------------------------------------------- (Small molecule data) Number of Min Max Mean Standard Angle X-PLOR labelling Mean St. dev values value value value deviation ------------------------------------------------------------------------------------------------------------- CA-C-N CH1E-C-NH1 (except Gly,Pro)116.2 2.0 89 113.41 118.94 116.20 1.13 * * CH2G*-C-NH1 (Gly) 116.4 2.1 7 113.92 117.45 115.89 1.27 * CH1E-C-N (Pro) 116.9 1.5 5 115.16 117.21 116.32 .82 * O-C-N O-C-NH1 (except Pro) 123.0 1.6 96 121.12 124.63 123.09 .66 * * O-C-N (Pro) 122.0 1.4 5 122.26 123.94 122.87 .59 * C-N-CA C-NH1-CH1E (except Gly,Pro)121.7 1.8 89 118.96 125.55 122.06 1.46 +* ** C-NH1-CH2G* (Gly) 120.6 1.7 7 119.95 123.25 121.41 1.06 +* C-N-CH1E (Pro) 122.6 5.0 5 121.60 123.62 122.45 .66 CA-C-O CH1E-C-O (except Gly) 120.8 1.7 94 119.14 122.22 120.70 .64 CH2G*-C-O (Gly) 120.8 2.1 7 120.10 121.91 120.89 .64 CB-CA-C CH3E-CH1E-C (Ala) 110.5 1.5 2 109.68 110.73 110.20 .52 CH1E-CH1E-C (Ile,Thr,Val) 109.1 2.2 18 106.73 111.90 109.77 1.34 * * CH2E-CH1E-C (the rest) 110.1 1.9 75 107.60 114.35 110.63 1.44 * ** N-CA-C NH1-CH1E-C (except Gly,Pro)111.2 2.8 90 105.91 114.98 110.02 1.99 +* * NH1-CH2G*-C (Gly) 112.5 2.9 7 107.52 113.55 111.85 2.23 +* N-CH1E-C (Pro) 111.8 2.5 5 107.98 111.57 110.37 1.27 +* N-CA-CB NH1-CH1E-CH3E (Ala) 110.4 1.5 2 109.30 111.65 110.48 1.18 NH1-CH1E-CH1E (Ile,Thr,Val) 111.5 1.7 18 108.46 113.59 111.51 1.58 +* * N-CH1E-CH2E (Pro) 103.0 1.1 5 103.19 104.68 104.02 .49 +* NH1-CH1E-CH2E (the rest) 110.5 1.7 70 107.49 114.85 110.96 1.56 +* +** ------------------------------------------------------------------------------------------------------------- The small molecule data used in the above analysis is from Engh & Huber (1991). The atom labelling follows that used in the X-PLOR dictionary, with some additional atoms (marked with an asterisk) as defined by Engh & Huber. Residue-by-residue listing for refined_15 Page 12 ---------------------------------------- R A M A C H A N D R A N P L O T S T A T I S T I C S Residues in most favoured regions [A,B,L] 77 87.5% Residues in additional allowed regions [a,b,l,p] 9 10.2% Residues in generously allowed regions [~a,~b,~l,~p] 1 1.1% Residues in disallowed regions [XX] 1 1.1% ---- ------ Number of non-glycine and non-proline residues 88 100.0% Number of end-residues (excl. Gly and Pro) 2 Number of glycine residues 7 Number of proline residues 5 ---- Total number of residues 102 Based on the analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20%, a good quality model would be expected to have over 90% in the most favoured regions [E,H,L]. S T E R E O C H E M I S T R Y O F M A I N - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. %-tage residues in A, B, L 88 87.5 83.8 10.0 .4 Inside b. Omega angle st dev 101 4.0 6.0 3.0 -.7 Inside c. Bad contacts / 100 residues 0 .0 4.2 10.0 -.4 Inside d. Zeta angle st dev 95 1.9 3.1 1.6 -.8 Inside e. H-bond energy st dev 59 .9 .8 .2 .5 Inside f. Overall G-factor 102 -.1 -.4 .3 1.1 BETTER S T E R E O C H E M I S T R Y O F S I D E - C H A I N Comparison values No. of No. of Parameter Typical Band band widths Stereochemical parameter data pts value value width from mean ------------------------ -------- ----- ----- ----- --------- a. Chi-1 gauche minus st dev 20 9.5 18.1 6.5 -1.3 BETTER b. Chi-1 trans st dev 34 8.6 19.0 5.3 -2.0 BETTER c. Chi-1 gauche plus st dev 34 9.4 17.5 4.9 -1.7 BETTER d. Chi-1 pooled st dev 88 9.8 18.2 4.8 -1.7 BETTER e. Chi-2 trans st dev 22 4.5 20.4 5.0 -3.2 BETTER M O R R I S E T A L . C L A S S I F I C A T I O N Mean St.dev Classification Parameter m s 1 2 3 4 Value Class --------- ---- --- ------------------------------------ ----- ----- Phi-psi distribution - - >75.0% >65.0% >55.0% <55.0% 87.5 1 Chi-1 st.dev. 18.2 6.2 <12.0 <18.2 <24.4 >24.4 10.1 1 H-bond energy st dev .87 .24 < .63 < .87 <1.11 >1.11 .90 3 Residue-by-residue listing for refined_15 Page 13 ---------------------------------------- G - F A C T O R S Average Parameter Score Score --------- ----- ----- Dihedral angles:- Phi-psi distribution -.38 Chi1-chi2 distribution -.47 Chi1 only .20 Chi3 & chi4 .42 Omega -.18 ------ -.21 ===== Main-chain covalent forces:- Main-chain bond lengths -.07 Main-chain bond angles .35 ------ .18 ===== OVERALL AVERAGE -.07 ===== Ideally, scores should be above -0.5. Values below -1.0 may need investigation.