/* gc_co_nh.c 3D C(CO)NH (or CCH-TOCSY-NNH) gradient sensitivity enhanced version. Correlates all the aliphatic 13C resonances of a given amino acid directly with the amide of the next residue. Uses isotropic 13C mixing and 15N constant time evolution. Standard features include maintaining the 13C carrier in the CaCb region throughout using off-res SLP pulses; full power square pulses on 13C initially when 13CO excitation is irrelevant; square pulses on the Ca and CaCb with first null at 13CO; one lobe sinc pulses on 13CO with first null at Ca; shaka6 composite 180 pulse to simultaneously refocus Ca and invert CO; optional 2H decoupling when CaCb magnetization is transverse for 4 channel spectrometers. Magic-angle option for coherence transfer gradients. TROSY option for N15/H1 evolution/detection. pulse sequence: J Magn. Reson. B 101, 114-119 (1993) see also: J Magn. Reson. B 101, 206-209(1993) SLP pulses: J Magn. Reson. 96, 94-102 (1992) shaka6 composite: Chem. Phys. Lett. 120, 201 (1985) TROSY: JACS, 120, 10778 (1998) (comments such as "point g" refer to pulse sequence diagram in reference) Written by M Robin Bendall, Varian, March 94 and 95. Revised and improved to a standard format by MRB, BKJ and GG for the BioPack, January 1997. TROSY added Dec 98, based on similar addition to gNhsqc. (Version Dec 1998). Modified for enterable 1H decoupling strength (NM jan03). CHOICE OF DECOUPLING AND 2D MODES Set dm = 'nnn', dmm = 'ccc' Set dm2 = 'nny', dmm2 = 'ccg' (or 'ccw', or 'ccp') for 15N decoupling. Set dm3 = 'nnn' for no 2H decoupling, or 'nyn' and dmm3 = 'cwc' for 2H decoupling. Must set phase = 1,2 and phase2 = 1,2 for States-TPPI acquisition in t1 [13C] and t2 [15N]. The flag f1180/f2180 should be set to 'y' if t1/t2 is to be started at halfdwell time. This will give 90, -180 phasing in f1/f2. If it is set to 'n' the phasing should be 0,0 and will still give a perfect baseline. Thus, set f1180='n' for (0,0) in 13C and f2180='n' for (0,0) in 15N. f1180='y' is ignored if ni=0, and f2180='y' is ignored if ni2=0. DETAILED INSTRUCTIONS FOR USE OF gc_co_nh 1. Obtain a printout of the Philosopy behind the BioPack development, and General Instructions using the macro: "printon man('BioPack') printoff". These Detailed Instructions for gc_co_nh may be printed using: "printon man('gc_co_nh') printoff". 2. Apply the setup macro "gc_co_nh". This loads the relevant parameter set and also sets ni=ni2=0 and phase=phase2=1 ready for a 1D spectral check. 3. The parameter ncyc corresponds to the number of cycles of DIPSI-3 mixing. Use ncyc = 2 or 3 usually. This corresponds to a total mixing time of (2 or 3)*6.07*600/sfrq ms. A DIPSI rf field of 9 kHz for a 600Mhz spectrometer is sufficient to cover 14.4 kHz of spectral width (96 ppm) and is more than adequate for the CC J's. Cange the value spinlock if a different rf strength is required. 4. The two C13 180 degree pulses after the DIPSI-3 decoupling have been replaced by a single 6-pulse composite dubbed "shaka6" which povides near perfect refocusing with no phase roll over the Cab region and near perfect inversion over the CO region 18kHz off-resonance provided pwC < 20 us in a 600 MHz system. 5. Centre H1 frequency on H2O (4.7ppm), C13 frequency on 46ppm, and N15 frequency on the amide region (120 ppm). The C13 frequency remains at 46ppm, ie at CaCb throughout the sequence. 6. The H1 frequency is NOT shifted to the amide region during the sequence. H1 DIPSI2 decoupling can be adjusted (waltzB1). 7. The parameter phi7cal (listed in dg and dg2) is provided to adjust the phase of the last 90 degree C13 pulse, which is phase-shifted by the prior 180 degree pulse on the Ca region and by the use of SLP pulses on the CO region. The experimentally determined value of this phase is also very sensitive to small timing differences (microseconds) between the two theta delays. Check this phase via 1D spectra - maximise signal, or for greater accuracy obtain the value for a null and then add or subtract 90 degrees. The value must be a positive number. It needs to be calibrated once only for each spectrometer and the gc_co_nh and gcbca_co_nh pulse sequences if you forget to do so. 8. tauCH (1.7 ms) and timeTN (14 ms) were determined for alphalytic protease and are listed in dg2 for possible readjustment by the user. 9. The coherence-transfer gradients using power levels gzlvl1 and gzlvl2 may be either z or magic-angle gradients. For the latter, a proper /vnmr/imaging/gradtable entry must be present and syscoil must contain the value of this entry (name of gradtable). The amplitude of the gzlvl1 and gzlvl2 should be lower than for a z axis probe to have the x and y gradient levels within the 32k range. For any value, a dps display (using power display) shows the x,y and z dac values. These must be <=32k. 10. TROSY: Set TROSY='y' and dm2='nnn' for a TROSY spectrum of the bottom right peak of the 2D coupled NH quartet (high-field H1, low-field N15). The TROSY spectrum gives 50% S/N compared to the decoupled spectrum for a small peptide. To select any of the other three peaks of the 2D coupled quartet, in a clockwise direction from bottom right, change t4/t10 from x/y to x/-y to -x/-y to -x/y. NOTE, the phases of the SE train are almost the same as those determined for the gNhsqc sequence. The major difference is that kappa is eliminated compared to normal gc_co_nh so the N15 magnetization has not evolved with respect to the attached H's. I.e. the N15 state would be Ix rather than IySz if there was no coherence gradient - this imparts a 90 degree shift so t8 is changed to y (from x in the normal spectrum). Also gzlvl1 is after the 180 N15 pulse rather than before as in gNhsqc, so the sign of icosel and the t4/t10 phase2 increments are also swapped compared to gNhsqc. */ #include #include static int /* T is for TROSY='y', phx etc also enable TROSY phase changes */ phx[1]={0}, phy[1]={1}, phi5[2] = {0,2}, phi6[2] = {2,0}, phi9[8] = {0,0,1,1,2,2,3,3}, rec[4] = {0,2,2,0}, recT[2] = {3,1}; static double d2_init=0.0, d3_init=0.0; pulsesequence() { /* DECLARE AND LOAD VARIABLES */ char f1180[MAXSTR], /* Flag to start t1 @ halfdwell */ f2180[MAXSTR], /* Flag to start t2 @ halfdwell */ mag_flg[MAXSTR], /* magic-angle coherence transfer gradients */ TROSY[MAXSTR]; /* do TROSY on N15 and H1 */ int icosel, /* used to get n and p type */ t1_counter, /* used for states tppi in t1 */ t2_counter, /* used for states tppi in t2 */ ni = getval("ni"), ni2 = getval("ni2"); double tau1, /* t1 delay */ tau2, /* t2 delay */ t1a, /* time increments for first dimension */ BPdpwrspinlock, /* user-defined upper limit for spinlock(Hz) */ BPpwrlimits, /* =0 for no limit, =1 for limit */ t1b, t1c, tauCH = getval("tauCH"), /* 1/4J delay for CH */ timeTN = getval("timeTN"), /* constant time for 15N evolution */ epsilon = 1.05e-3, /* other delays */ zeta = 3.0e-3, eta = 4.6e-3, theta = 14.0e-3, kappa = 5.4e-3, lambda = 2.4e-3, sheila, /* to transfer J evolution time hyperbolically into tau1 */ pwClvl = getval("pwClvl"), /* coarse power for C13 pulse */ pwC = getval("pwC"), /* C13 90 degree pulse length at pwClvl */ rf0, /* maximum fine power when using pwC pulses */ /* 90 degree pulse at Cab(46ppm), first off-resonance null at CO (174ppm) */ pwC1, /* 90 degree pulse length on C13 at rf1 */ rf1, /* fine power for 5.1 kHz rf for 600MHz magnet */ /* 180 degree pulse at Cab(46ppm), first off-resonance null at CO(174ppm) */ pwC2, /* 180 degree pulse length at rf2 */ rf2, /* fine power for 11.4 kHz rf for 600MHz magnet */ /* p_d is used to calculate the selective decoupling on the Cab region */ p_d, /* 50 degree pulse for DIPSI-3 at rfd */ rfd, /* fine power for DIPSI-3 spinlock */ spinlock = getval("spinlock"), /* DIPSI-3 filed strength */ ncyc = getval("ncyc"), /* no. of cycles of DIPSI-3 */ /* the following pulse lengths for SLP pulses are automatically calculated */ /* by the macro "proteincal". SLP pulse shapes, "offC4" etc are called */ /* directly from your shapelib. */ pwC4 = getval("pwC4"), /*180 degree pulse at Ca(56ppm) null at CO(174ppm) */ pwC5 = getval("pwC5"), /* 90 degree selective sinc pulse on CO(174ppm) */ pwC7 = getval("pwC7"), /* 180 degree selective sinc pulse on CO(174ppm) */ rf4, /* fine power for the pwC4 ("offC4") pulse */ rf5, /* fine power for the pwC5 ("offC5") pulse */ rf7, /* fine power for the pwC7 ("offC7") pulse */ compH = getval("compH"), /* adjustment for C13 amplifier compression */ compC = getval("compC"), /* adjustment for C13 amplifier compression */ phi7cal = getval("phi7cal"), /* phase in degrees of the last C13 90 pulse */ pwH, /* H1 90 degree pulse length at tpwr1 */ tpwr1, /* rf for DIPSI-2 */ DIPSI2time, /* total length of DIPSI-2 decoupling */ waltzB1 = getval("waltzB1"), /*Dipsi-2 decoupling field strength (Hz) */ ncyc_dec, pwNlvl = getval("pwNlvl"), /* power for N15 pulses */ pwN = getval("pwN"), /* N15 90 degree pulse length at pwNlvl */ sw1 = getval("sw1"), sw2 = getval("sw2"), gt1 = getval("gt1"), /* coherence pathway gradients */ gzcal = getval("gzcal"), /* g/cm to DAC conversion factor */ gzlvl1 = getval("gzlvl1"), gzlvl2 = getval("gzlvl2"), gt0 = getval("gt0"), /* other gradients */ gt3 = getval("gt3"), gt4 = getval("gt4"), gt5 = getval("gt5"), gstab = getval("gstab"), gzlvl0 = getval("gzlvl0"), gzlvl3 = getval("gzlvl3"), gzlvl4 = getval("gzlvl4"), gzlvl5 = getval("gzlvl5"), gzlvl6 = getval("gzlvl6"); getstr("f1180",f1180); getstr("f2180",f2180); getstr("mag_flg",mag_flg); getstr("TROSY",TROSY); /* LOAD PHASE TABLE */ settable(t3,1,phx); settable(t4,1,phx); settable(t5,2,phi5); settable(t6,2,phi6); if (TROSY[A]=='y') {settable(t8,1,phy); settable(t9,1,phx); settable(t10,1,phy); settable(t11,1,phx); settable(t12,2,recT);} else {settable(t8,1,phx); settable(t9,8,phi9); settable(t10,1,phx); settable(t11,1,phy); settable(t12,4,rec);} /* INITIALIZE VARIABLES */ P_getreal(GLOBAL,"BPpwrlimits",&BPpwrlimits,1); P_getreal(GLOBAL,"BPdpwrspinlock",&BPdpwrspinlock,1); if (BPpwrlimits > 0.5) { if (spinlock > BPdpwrspinlock) { spinlock = BPdpwrspinlock; printf("spinlock too large, reset to user-defined limit (BPdpwrspinlock)"); psg_abort(1); } } if( dpwrf < 4095 ) { printf("reset dpwrf=4095 and recalibrate C13 90 degree pulse"); psg_abort(1); } if( pwC > 24.0*600.0/sfrq ) { printf("increase pwClvl so that pwC < 24*600/sfrq"); psg_abort(1); } /* maximum fine power for pwC pulses */ rf0 = 4095.0; /* 90 degree pulse on Cab, null at CO 128ppm away */ pwC1 = sqrt(15.0)/(4.0*128.0*dfrq); rf1 = (compC*4095.0*pwC)/pwC1; rf1 = (int) (rf1 + 0.5); /* 180 degree pulse on Cab, null at CO 128ppm away */ pwC2 = sqrt(3.0)/(2.0*128.0*dfrq); rf2 = (4095.0*compC*pwC*2.0)/pwC2; rf2 = (int) (rf2 + 0.5); /* 180 degree pulse on Ca, null at CO 118ppm away */ rf4 = (compC*4095.0*pwC*2.0)/pwC4; rf4 = (int) (rf4 + 0.5); /* 90 degree one-lobe sinc pulse on CO, null at Ca 118ppm away */ rf5 = (compC*4095.0*pwC*1.69)/pwC5; /* needs 1.69 times more */ rf5 = (int) (rf5 + 0.5); /* power than a square pulse */ /* 180 degree one-lobe sinc pulse on CO, null at Ca 118ppm away */ rf7 = (compC*4095.0*pwC*2.0*1.65)/pwC7; /* needs 1.65 times more */ rf7 = (int) (rf7 + 0.5); /* power than a square pulse */ /* power level and pulse times for DIPSI 1H decoupling */ DIPSI2time = 2.0*3.0e-3 + 2.0*14.0e-3 + 2.0*timeTN - 5.4e-3 + 0.5*pwC1 + 2.0*pwC5 + 5.0*pwN + 2*gt3 + 1.0e-4 + 4.0*GRADIENT_DELAY + 2.0* POWER_DELAY + 8.0*PRG_START_DELAY; pwH = 1.0/(4.0*waltzB1); ncyc_dec = DIPSI2time*90/(pwH*2590*4.0); ncyc_dec = (int) (ncyc_dec + 0.5); pwH = (DIPSI2time*90.0)/(ncyc_dec*2590*4.0); /* fine correction of pwH based of ncyc_dec */ tpwr1 = 4095.0*(compH*pw/pwH); tpwr1 = (int) (2.0*tpwr1 + 0.5); /* x2 because obs atten will be reduced by 6dB */ if (ix == 1) { fprintf(stdout, "\nNo of DIPSI-2 cycles = %4.1f\n",ncyc_dec); fprintf(stdout, "\nfine power for DIPSI-2 pulse =%6.1f\n",tpwr1); } /* dipsi-3 decoupling on CbCa */ p_d = (5.0)/(9.0*4.0*spinlock); /* DIPSI-3 spinlock*/ rfd = (compC*4095.0*pwC*5.0)/(p_d*9.0); rfd = (int) (rfd + 0.5); ncyc = (int) (ncyc + 0.5); ncyc = (int) (ncyc + 0.5); /* CHECK VALIDITY OF PARAMETER RANGES */ if ( 0.5*ni2*1/(sw2) > timeTN - WFG3_START_DELAY) { printf(" ni2 is too big. Make ni2 equal to %d or less.\n", ((int)((timeTN - WFG3_START_DELAY)*2.0*sw2))); psg_abort(1);} if ( dm[A] == 'y' || dm[B] == 'y' || dm[C] == 'y' ) { printf("incorrect dec1 decoupler flags! Should be 'nnn' "); psg_abort(1);} if ( dm2[A] == 'y' || dm2[B] == 'y' ) { printf("incorrect dec2 decoupler flags! Should be 'nny' "); psg_abort(1);} if ( dm3[A] == 'y' || dm3[C] == 'y' ) { printf("incorrect dec3 decoupler flags! Should be 'nyn' or 'nnn' "); psg_abort(1);} if ( dpwr2 > 50 ) { printf("dpwr2 too large! recheck value "); psg_abort(1);} if ( pw > 20.0e-6 ) { printf(" pw too long ! recheck value "); psg_abort(1);} if ( pwN > 100.0e-6 ) { printf(" pwN too long! recheck value "); psg_abort(1);} if ( TROSY[A]=='y' && dm2[C] == 'y' ) { text_error("Choose either TROSY='n' or dm2='n' ! "); psg_abort(1);} /* PHASES AND INCREMENTED TIMES */ /* Phase incrementation for hypercomplex 2D data, States-Haberkorn element */ if (phase1 == 2) tsadd(t3,1,4); if (TROSY[A]=='y') { if (phase2 == 2) icosel = +1; else {tsadd(t4,2,4); tsadd(t10,2,4); icosel = -1;} } else { if (phase2 == 2) {tsadd(t10,2,4); icosel = +1;} else icosel = -1; } /* C13 TIME INCREMENTATION and set up f1180 */ /* Set up f1180 */ tau1 = d2; if((f1180[A] == 'y') && (ni > 1.0)) { tau1 += ( 1.0 / (2.0*sw1) ); if(tau1 < 0.2e-6) tau1 = 0.0; } tau1 = tau1/2.0; /* Hyperbolic sheila seems superior to original zeta approach */ /* subtract unavoidable delays from epsilon */ epsilon = epsilon -pwC7 -WFG_START_DELAY -gt4 -2.0*GRADIENT_DELAY -5.0e-5; if ((ni-1)/(2.0*sw1) > 2.0*epsilon) { if (tau1 > 2.0*epsilon) sheila = epsilon; else if (tau1 > 0) sheila = 1.0/(1.0/tau1+1.0/epsilon-1.0/(2.0*epsilon)); else sheila = 0.0; } else { if (tau1 > 0) sheila = 1.0/(1.0/tau1 + 1.0/epsilon - 2.0*sw1/(ni-1)); else sheila = 0.0; } t1a = tau1; t1b = tau1 - sheila; t1c = epsilon - sheila; /* Set up f2180 */ tau2 = d3; if((f2180[A] == 'y') && (ni2 > 1.0)) { tau2 += ( 1.0 / (2.0*sw2) ); if(tau2 < 0.2e-6) tau2 = 0.0; } tau2 = tau2/2.0; /* Calculate modifications to phases for States-TPPI acquisition */ if( ix == 1) d2_init = d2; t1_counter = (int) ( (d2-d2_init)*sw1 + 0.5 ); if(t1_counter % 2) { tsadd(t3,2,4); tsadd(t12,2,4); } if( ix == 1) d3_init = d3; t2_counter = (int) ( (d3-d3_init)*sw2 + 0.5 ); if(t2_counter % 2) { tsadd(t8,2,4); tsadd(t12,2,4); } /* BEGIN PULSE SEQUENCE */ status(A); if (dm3[B]=='y') lk_sample(); delay(d1); if ((ni/sw1-d2)>0) delay(ni/sw1-d2); /*decreases as t1 increases for const.heating*/ if ((ni2/sw2-d3)>0) delay(ni2/sw2-d3); /*decreases as t2 increases for const.heating*/ if ( dm3[B] == 'y' ) { lk_hold(); lk_sampling_off();} /*freezes z0 correction, stops lock pulsing*/ rcvroff(); obspower(tpwr); decpower(pwClvl); dec2power(pwNlvl); decpwrf(rf0); obsoffset(tof); txphase(one); delay(1.0e-5); if (TROSY[A] == 'n') dec2rgpulse(pwN, zero, 0.0, 0.0); /*destroy X magnetization*/ decrgpulse(pwC, zero, 0.0, 0.0); zgradpulse(gzlvl0, 0.5e-3); delay(1.0e-4); if (TROSY[A] == 'n') dec2rgpulse(pwN, one, 0.0, 0.0); decrgpulse(pwC, zero, 0.0, 0.0); zgradpulse(0.7*gzlvl0, 0.5e-3); delay(5.0e-4); rgpulse(pw, one, 0.0, 0.0); /* 1H pulse excitation */ /* point a */ txphase(zero); decphase(zero); zgradpulse(gzlvl0, gt0); delay(tauCH - gt0); simpulse(2*pw, 2.0*pwC, zero, zero, 0.0, 0.0); decphase(t3); zgradpulse(gzlvl0, gt0); delay(tauCH - gt0); /* point b */ rgpulse(pw, zero, 0.0, 0.0); zgradpulse(gzlvl3, gt3); delay(2.0e-4); if ( dm3[B] == 'y' ) /* begins optional 2H decoupling */ { gt4=0.0; /* no gradients during 2H decoupling */ dec3rgpulse(1/dmf3,one,10.0e-6,2.0e-6); dec3unblank(); dec3phase(zero); delay(2.0e-6); setstatus(DEC3ch, TRUE, 'w', FALSE, dmf3); } decrgpulse(pwC, t3, 0.0, 0.0); /* point c */ decphase(zero); decpwrf(rf7); delay(t1a); decshaped_pulse("offC7", pwC7, zero, 0.0, 0.0); decpwrf(rf2); zgradpulse(gzlvl4, gt4); /* 2.0*GRADIENT_DELAY */ delay(5.0e-5); delay(epsilon - 2.0*pw); rgpulse(2.0*pw, zero, 0.0, 0.0); delay(t1b); decrgpulse(pwC2, zero, 0.0, 0.0); zgradpulse(gzlvl4, gt4); /* 2.0*GRADIENT_DELAY */ delay(5.0e-5); decpwrf(rf7); delay(t1c); decshaped_pulse("offC7", pwC7, zero, 0.0, 0.0); decpwrf(rfd); /* point d */ decrgpulse(1.0e-3, zero, 2.0e-6, 0.0); initval(ncyc, v2); starthardloop(v2); decrgpulse(4.9*p_d,one,0.0,0.0); decrgpulse(7.9*p_d,three,0.0,0.0); decrgpulse(5.0*p_d,one,0.0,0.0); decrgpulse(5.5*p_d,three,0.0,0.0); decrgpulse(0.6*p_d,one,0.0,0.0); decrgpulse(4.6*p_d,three,0.0,0.0); decrgpulse(7.2*p_d,one,0.0,0.0); decrgpulse(4.9*p_d,three,0.0,0.0); decrgpulse(7.4*p_d,one,0.0,0.0); decrgpulse(6.8*p_d,three,0.0,0.0); decrgpulse(7.0*p_d,one,0.0,0.0); decrgpulse(5.2*p_d,three,0.0,0.0); decrgpulse(5.4*p_d,one,0.0,0.0); decrgpulse(0.6*p_d,three,0.0,0.0); decrgpulse(4.5*p_d,one,0.0,0.0); decrgpulse(7.3*p_d,three,0.0,0.0); decrgpulse(5.1*p_d,one,0.0,0.0); decrgpulse(7.9*p_d,three,0.0,0.0); decrgpulse(4.9*p_d,three,0.0,0.0); decrgpulse(7.9*p_d,one,0.0,0.0); decrgpulse(5.0*p_d,three,0.0,0.0); decrgpulse(5.5*p_d,one,0.0,0.0); decrgpulse(0.6*p_d,three,0.0,0.0); decrgpulse(4.6*p_d,one,0.0,0.0); decrgpulse(7.2*p_d,three,0.0,0.0); decrgpulse(4.9*p_d,one,0.0,0.0); decrgpulse(7.4*p_d,three,0.0,0.0); decrgpulse(6.8*p_d,one,0.0,0.0); decrgpulse(7.0*p_d,three,0.0,0.0); decrgpulse(5.2*p_d,one,0.0,0.0); decrgpulse(5.4*p_d,three,0.0,0.0); decrgpulse(0.6*p_d,one,0.0,0.0); decrgpulse(4.5*p_d,three,0.0,0.0); decrgpulse(7.3*p_d,one,0.0,0.0); decrgpulse(5.1*p_d,three,0.0,0.0); decrgpulse(7.9*p_d,one,0.0,0.0); decrgpulse(4.9*p_d,three,0.0,0.0); decrgpulse(7.9*p_d,one,0.0,0.0); decrgpulse(5.0*p_d,three,0.0,0.0); decrgpulse(5.5*p_d,one,0.0,0.0); decrgpulse(0.6*p_d,three,0.0,0.0); decrgpulse(4.6*p_d,one,0.0,0.0); decrgpulse(7.2*p_d,three,0.0,0.0); decrgpulse(4.9*p_d,one,0.0,0.0); decrgpulse(7.4*p_d,three,0.0,0.0); decrgpulse(6.8*p_d,one,0.0,0.0); decrgpulse(7.0*p_d,three,0.0,0.0); decrgpulse(5.2*p_d,one,0.0,0.0); decrgpulse(5.4*p_d,three,0.0,0.0); decrgpulse(0.6*p_d,one,0.0,0.0); decrgpulse(4.5*p_d,three,0.0,0.0); decrgpulse(7.3*p_d,one,0.0,0.0); decrgpulse(5.1*p_d,three,0.0,0.0); decrgpulse(7.9*p_d,one,0.0,0.0); decrgpulse(4.9*p_d,one,0.0,0.0); decrgpulse(7.9*p_d,three,0.0,0.0); decrgpulse(5.0*p_d,one,0.0,0.0); decrgpulse(5.5*p_d,three,0.0,0.0); decrgpulse(0.6*p_d,one,0.0,0.0); decrgpulse(4.6*p_d,three,0.0,0.0); decrgpulse(7.2*p_d,one,0.0,0.0); decrgpulse(4.9*p_d,three,0.0,0.0); decrgpulse(7.4*p_d,one,0.0,0.0); decrgpulse(6.8*p_d,three,0.0,0.0); decrgpulse(7.0*p_d,one,0.0,0.0); decrgpulse(5.2*p_d,three,0.0,0.0); decrgpulse(5.4*p_d,one,0.0,0.0); decrgpulse(0.6*p_d,three,0.0,0.0); decrgpulse(4.5*p_d,one,0.0,0.0); decrgpulse(7.3*p_d,three,0.0,0.0); decrgpulse(5.1*p_d,one,0.0,0.0); decrgpulse(7.9*p_d,three,0.0,0.0); endhardloop(); /* point e */ obspwrf(tpwr1); obspower(tpwr-6); obsprgon("dipsi2", pwH, 5.0); /* PRG_START_DELAY */ xmtron(); decpwrf(rf0); decphase(t5); delay(zeta - 2.0*POWER_DELAY - PRG_START_DELAY - 0.5*10.933*pwC); decrgpulse(pwC*158.0/90.0, t5, 0.0, 0.0); decrgpulse(pwC*171.2/90.0, t6, 0.0, 0.0); decrgpulse(pwC*342.8/90.0, t5, 0.0, 0.0); /* Shaka composite */ decrgpulse(pwC*145.5/90.0, t6, 0.0, 0.0); decrgpulse(pwC*81.2/90.0, t5, 0.0, 0.0); decrgpulse(pwC*85.3/90.0, t6, 0.0, 0.0); decpwrf(rf1); decphase(zero); delay(zeta - 0.5*10.933*pwC - 0.5*pwC1); /* point f */ decrgpulse(pwC1, zero, 0.0, 0.0); decphase(t5); decpwrf(rf5); if ( dm3[B] == 'y' ) /* turns off 2H decoupling */ { setstatus(DEC3ch, FALSE, 'c', FALSE, dmf3); dec3rgpulse(1/dmf3,three,2.0e-6,2.0e-6); dec3blank(); lk_autotrig(); /* resumes lock pulsing */ } zgradpulse(gzlvl3, gt3); delay(2.0e-4); decshaped_pulse("offC5", pwC5, t5, 0.0, 0.0); /* point g */ decpwrf(rf4); decphase(zero); delay(eta); decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); decpwrf(rf7); dec2phase(zero); delay(theta - eta - pwC4 - WFG3_START_DELAY); /* WFG3_START_DELAY */ sim3shaped_pulse("", "offC7", "", 0.0, pwC7, 2.0*pwN, zero, zero, zero, 0.0, 0.0); decpwrf(rf5); decpwrf(rf5); initval(phi7cal, v7); decstepsize(1.0); dcplrphase(v7); /* SAPS_DELAY */ dec2phase(t8); delay(theta - SAPS_DELAY); /* point h */ decshaped_pulse("offC5", pwC5, zero, 0.0, 0.0); /* xxxxxxxxxxxxxxxxxx OPTIONS FOR N15 EVOLUTION xxxxxxxxxxxxxxxxxxxxx */ zgradpulse(gzlvl3, gt3); if (TROSY[A]=='y') { xmtroff(); obsprgoff(); } delay(2.0e-4); dcplrphase(zero); dec2rgpulse(pwN, t8, 0.0, 0.0); /* point i */ decpwrf(rf7); decphase(zero); dec2phase(t9); delay(timeTN - WFG3_START_DELAY - tau2); /* WFG3_START_DELAY */ sim3shaped_pulse("", "offC7", "", 0.0, pwC7, 2.0*pwN, zero, zero, t9, 0.0, 0.0); dec2phase(t10); decpwrf(rf4); if (TROSY[A]=='y') { if (tau2 > gt1 + 2.0*GRADIENT_DELAY + 1.0e-4) { txphase(t4); delay(timeTN - pwC4 - WFG_START_DELAY); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(tau2 - gt1 - 2.0*GRADIENT_DELAY - 1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); } else { txphase(t4); delay(timeTN -pwC4 -WFG_START_DELAY -gt1 -2.0*GRADIENT_DELAY -1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(tau2); } } else { if (tau2 > kappa) { delay(timeTN - pwC4 - WFG_START_DELAY); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(tau2 - kappa - PRG_STOP_DELAY); xmtroff(); obsprgoff(); /* PRG_STOP_DELAY */ txphase(t4); delay(kappa - gt1 - 2.0*GRADIENT_DELAY - 1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); /* WFG_START_DELAY */ } else if (tau2 > (kappa - pwC4 - WFG_START_DELAY)) { delay(timeTN + tau2 - kappa - PRG_STOP_DELAY); xmtroff(); obsprgoff(); /* PRG_STOP_DELAY */ txphase(t4); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(kappa -pwC4 -WFG_START_DELAY -gt1 -2.0*GRADIENT_DELAY -1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); /* WFG_START_DELAY */ } else if (tau2 > gt1 + 2.0*GRADIENT_DELAY + 1.0e-4) { delay(timeTN + tau2 - kappa - PRG_STOP_DELAY); xmtroff(); obsprgoff(); /* PRG_STOP_DELAY */ txphase(t4); delay(kappa - tau2 - pwC4 - WFG_START_DELAY); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(tau2 - gt1 - 2.0*GRADIENT_DELAY - 1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); /* WFG_START_DELAY */ } else { delay(timeTN + tau2 - kappa - PRG_STOP_DELAY); xmtroff(); obsprgoff(); /* PRG_STOP_DELAY */ txphase(t4); delay(kappa-tau2-pwC4-WFG_START_DELAY-gt1-2.0*GRADIENT_DELAY-1.0e-4); if (mag_flg[A]=='y') magradpulse(gzcal*gzlvl1, gt1); else zgradpulse(gzlvl1, gt1); /* 2.0*GRADIENT_DELAY */ obspower(tpwr); obspwrf(4095.0); /* POWER_DELAY */ delay(1.0e-4 - 2.0*POWER_DELAY); /* WFG_START_DELAY */ decshaped_pulse("offC4", pwC4, zero, 0.0, 0.0); delay(tau2); } } /* point j */ /* xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx */ if (TROSY[A]=='y') rgpulse(pw, t4, 0.0, 0.0); else sim3pulse(pw, 0.0, pwN, t4, zero, t10, 0.0, 0.0); txphase(zero); dec2phase(zero); zgradpulse(gzlvl5, gt5); if (TROSY[A]=='y') delay(lambda - 0.65*(pw + pwN) - gt5); else delay(lambda - 1.3*pwN - gt5); sim3pulse(2.0*pw, 0.0, 2.0*pwN, zero, zero, zero, 0.0, 0.0); zgradpulse(gzlvl5, gt5); txphase(one); dec2phase(t11); delay(lambda - 1.3*pwN - gt5); sim3pulse(pw, 0.0, pwN, one, zero, t11, 0.0, 0.0); txphase(zero); dec2phase(zero); zgradpulse(gzlvl6, gt5); delay(lambda - 1.3*pwN - gt5); sim3pulse(2.0*pw, 0.0, 2.0*pwN, zero, zero, zero, 0.0, 0.0); dec2phase(t10); zgradpulse(gzlvl6, gt5); if (TROSY[A]=='y') delay(lambda - 1.6*pwN - gt5); else delay(lambda - 0.65*pwN - gt5); if (TROSY[A]=='y') dec2rgpulse(pwN, t10, 0.0, 0.0); else rgpulse(pw, zero, 0.0, 0.0); delay((gt1/10.0) + 1.0e-4 +gstab - 0.5*pw + 2.0*GRADIENT_DELAY + POWER_DELAY); rgpulse(2.0*pw, zero, 0.0, rof1); dec2power(dpwr2); /* POWER_DELAY */ if (mag_flg[A] == 'y') magradpulse(icosel*gzcal*gzlvl2, gt1/10.0); else zgradpulse(icosel*gzlvl2, gt1/10.0); /* 2.0*GRADIENT_DELAY */ delay(gstab); rcvron(); statusdelay(C,1.0e-4 - rof1); if (dm3[B]=='y') lk_sample(); setreceiver(t12); }