#!/bin/csh

# Use this script to process the directly detected dimension of the spectrum
# and to extract the region of interest for further processing
# Make sure to cut out water in 13C-aliphatic spectra
# Use the phase corrections from the previous step
# Adjust the file names, phases, apodization parameters and region limits
# Save and execute the script
# The script will be saved under standard name 'proc1d.com'

# Make sure not to change the output mode. I.e. DO NOT use pipe2xyz!

xyz2pipe -in  ./data/test%03d.fid -verb            \
# DO NOT DELETE OR MODIFY THIS COMMENT: BEGIN 1D     \
#| nmrPipe  -fn SOL                                  \
| nmrPipe  -fn POLY -time                           \
| nmrPipe  -fn SP -off 0.35 -end 0.98 -pow 2 -c 1.0  \
   | nmrPipe  -fn SP -size 512 -off 0.35 -end 1.00 -pow 2 -c 1.0  \
| nmrPipe  -fn ZF -auto                              \
| nmrPipe  -fn FT                                    \
| nmrPipe  -fn PS -p0 -119 -p1 0 -di -sw                \
| nmrPipe  -fn EXT -x1 11.0ppm -xn 5.7ppm -sw       \
#| nmrPipe  -fn EXT -x1 10.5ppm -xn 6.0ppm  -sw      \
   | nmrPipe  -fn POLY -auto -ord 0                               \
# DO NOT DELETE OR MODIFY THIS COMMENT: END 1D        \
> ft/test_nus1.dat -verb