#!/bin/csh

# In this step the user has to use nmrPipe to Fourier Transform the indirect dimensions
# Use this template to change the required file names
# and any other parameters to your liking.
# This script will be saved under standard file name 'proc_indirect.com'
# At this point you may also create your own script, as this is the final step.

nmrPipe -in ft/Cnoesy.ft1 -verb                      \
# Dimension X                                       \
| nmrPipe  -fn POLY -auto  -ord 1                   \
| nmrPipe  -fn TP                                   \
# Dimension Y                                       \
| nmrPipe  -fn LP  -pred 68 -ord 10                 \
| nmrPipe  -fn SP -off 0.5 -end 0.98 -pow 2 -c 0.5  \
| nmrPipe  -fn ZF -auto                             \
| nmrPipe  -fn FT -auto                             \
| nmrPipe  -fn PS -p0 -90 -p1 0 -di -sw             \
| nmrPipe  -fn ZTP                                  \
# Dimension Z                                       \
#| nmrPipe  -fn LP -fb -auto                        \
| nmrPipe  -fn SP -off 0.5 -end 0.99 -pow 2 -c 0.5  \
| nmrPipe  -fn ZF -auto                             \
| nmrPipe  -fn FT -auto                             \
| nmrPipe  -fn PS -p0 0 -p1 0 -di -sw               \
| nmrPipe  -fn CS -ls 0.7ppm -sw                    \
#| nmrPipe  -fn EXT -x1 10.5ppm -xn -0.5ppm  -sw     \
| nmrPipe -fn POLY -auto -ord 0                     \
| nmrPipe -fn TP -verb                              \
| nmrPipe -fn POLY -auto -ord 0                     \
| pipe2xyz -out ft/Cnoesy%03d.DAT -x -ov


xyz2pipe -in ft/Cnoesy%03d.DAT -y -verb \
 > NUS_Cnoesy_LP.ft3

# to match with varian data
# pipe2ucsf -213 NUS_Cnoesy_LP.ft3 NUS_Cnoesy_LP.ucsf