data_17055 ####################### # Entry information # ####################### save_entry_information _Entry.Sf_category entry_information _Entry.Sf_framecode entry_information _Entry.ID 17055 _Entry.Title ; Binding Site Structure of One LRP-RAP Complex Implications for a Common Ligand-Receptor Binding Motif ; _Entry.Type macromolecule _Entry.Version_type original _Entry.Submission_date 2010-07-13 _Entry.Accession_date 2010-07-13 _Entry.Last_release_date 2010-09-08 _Entry.Original_release_date 2010-09-08 _Entry.Origination author _Entry.NMR_STAR_version 3.1.1.61 _Entry.Original_NMR_STAR_version 3.0.9.13 _Entry.Experimental_method NMR _Entry.Experimental_method_subtype solution _Entry.Details . _Entry.BMRB_internal_directory_name . loop_ _Entry_author.Ordinal _Entry_author.Given_name _Entry_author.Family_name _Entry_author.First_initial _Entry_author.Middle_initials _Entry_author.Family_title _Entry_author.Entry_ID 1 Gitte Jensen . A. . 17055 2 Olav Andersen . M. . 17055 3 Alexandre Bonvin . M.J.J. . 17055 4 Ida Bjerrum-Bohr . . . 17055 5 Michael Etzerodt . . . 17055 6 Hans Thogersen . C. . 17055 7 Charlotte O'Shea . . . 17055 8 Flemming Poulsen . M. . 17055 9 Birthe Kragelund . B. . 17055 stop_ loop_ _Data_set.Type _Data_set.Count _Data_set.Entry_ID binding_constants 1 17055 stop_ loop_ _Datum.Type _Datum.Count _Datum.Entry_ID 'binding constants' 1 17055 stop_ loop_ _Release.Release_number _Release.Format_type _Release.Format_version _Release.Date _Release.Submission_date _Release.Type _Release.Author _Release.Detail _Release.Entry_ID 1 . . 2010-09-08 2010-07-13 original author . 17055 stop_ save_ ############### # Citations # ############### save_entry_citation _Citation.Sf_category citations _Citation.Sf_framecode entry_citation _Citation.Entry_ID 17055 _Citation.ID 1 _Citation.Class 'entry citation' _Citation.CAS_abstract_code . _Citation.MEDLINE_UI_code . _Citation.DOI . _Citation.PubMed_ID 16938309 _Citation.Full_citation . _Citation.Title 'Binding Site Structure of One LRP-RAP Complex: Implications for a Common Ligand-Receptor Binding Motif' _Citation.Status published _Citation.Type journal _Citation.Journal_abbrev 'J. Mol. Biol.' _Citation.Journal_name_full . _Citation.Journal_volume 362 _Citation.Journal_issue 4 _Citation.Journal_ASTM . _Citation.Journal_ISSN . _Citation.Journal_CSD . _Citation.Book_title . _Citation.Book_chapter_title . _Citation.Book_volume . _Citation.Book_series . _Citation.Book_publisher . _Citation.Book_publisher_city . _Citation.Book_ISBN . _Citation.Conference_title . _Citation.Conference_site . _Citation.Conference_state_province . _Citation.Conference_country . _Citation.Conference_start_date . _Citation.Conference_end_date . _Citation.Conference_abstract_number . _Citation.Thesis_institution . _Citation.Thesis_institution_city . _Citation.Thesis_institution_country . _Citation.WWW_URL . _Citation.Page_first 700 _Citation.Page_last 716 _Citation.Year 2006 _Citation.Details . loop_ _Citation_author.Ordinal _Citation_author.Given_name _Citation_author.Family_name _Citation_author.First_initial _Citation_author.Middle_initials _Citation_author.Family_title _Citation_author.Entry_ID _Citation_author.Citation_ID 1 Gitte Jensen . A. . 17055 1 2 Olav Andersen . M. . 17055 1 3 Alexandre Bonvin . M.J.J. . 17055 1 4 Ida Bjerrum-Bohr . . . 17055 1 5 Michael Etzerodt . . . 17055 1 6 Hans Thogersen . C. . 17055 1 7 Charlotte O'Shea . . . 17055 1 8 Flemming Poulsen . M. . 17055 1 9 Birthe Kragelund . . . 17055 1 stop_ save_ ############################################# # Molecular system (assembly) description # ############################################# save_assembly _Assembly.Sf_category assembly _Assembly.Sf_framecode assembly _Assembly.Entry_ID 17055 _Assembly.ID 1 _Assembly.Name 'CR56/RAPd1 complex' _Assembly.BMRB_code . _Assembly.Number_of_components 2 _Assembly.Organic_ligands . _Assembly.Metal_ions . _Assembly.Non_standard_bonds no _Assembly.Ambiguous_conformational_states . _Assembly.Ambiguous_chem_comp_sites . _Assembly.Molecules_in_chemical_exchange . _Assembly.Paramagnetic no _Assembly.Thiol_state . _Assembly.Molecular_mass . _Assembly.Enzyme_commission_number . _Assembly.Details . _Assembly.DB_query_date . _Assembly.DB_query_revised_last_date . loop_ _Entity_assembly.ID _Entity_assembly.Entity_assembly_name _Entity_assembly.Entity_ID _Entity_assembly.Entity_label _Entity_assembly.Asym_ID _Entity_assembly.PDB_chain_ID _Entity_assembly.Experimental_data_reported _Entity_assembly.Physical_state _Entity_assembly.Conformational_isomer _Entity_assembly.Chemical_exchange_state _Entity_assembly.Magnetic_equivalence_group_code _Entity_assembly.Role _Entity_assembly.Details _Entity_assembly.Entry_ID _Entity_assembly.Assembly_ID 1 CR56 1 $CR56 A . yes native no no . . . 17055 1 2 RAPd1 2 $RAPd1 B . yes native no no . . . 17055 1 stop_ save_ #################################### # Biological polymers and ligands # #################################### save_CR56 _Entity.Sf_category entity _Entity.Sf_framecode CR56 _Entity.Entry_ID 17055 _Entity.ID 1 _Entity.BMRB_code . _Entity.Name CR56 _Entity.Type polymer _Entity.Polymer_common_type . _Entity.Polymer_type polypeptide(L) _Entity.Polymer_type_details . _Entity.Polymer_strand_ID . _Entity.Polymer_seq_one_letter_code_can . _Entity.Polymer_seq_one_letter_code ; SARTCPPNQFSCASGRCIPI SWTCDLDDDCGDRSDESASC AYPTCFPLTQFTCNNGRCIN INWRCDNDNDCGDNSDEAGC SH ; _Entity.Target_identifier . _Entity.Polymer_author_defined_seq . _Entity.Polymer_author_seq_details . _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID . _Entity.Nonpolymer_comp_label . _Entity.Number_of_monomers 82 _Entity.Number_of_nonpolymer_components . _Entity.Paramagnetic no _Entity.Thiol_state 'not reported' _Entity.Src_method . _Entity.Parent_entity_ID . _Entity.Fragment . _Entity.Mutation . _Entity.EC_number . _Entity.Calc_isoelectric_point . _Entity.Formula_weight . _Entity.Formula_weight_exptl . _Entity.Formula_weight_exptl_meth . _Entity.Details . _Entity.DB_query_date . _Entity.DB_query_revised_last_date 2015-11-25 loop_ _Entity_db_link.Ordinal _Entity_db_link.Author_supplied _Entity_db_link.Database_code _Entity_db_link.Accession_code _Entity_db_link.Entry_mol_code _Entity_db_link.Entry_mol_name _Entity_db_link.Entry_experimental_method _Entity_db_link.Entry_structure_resolution _Entity_db_link.Entry_relation_type _Entity_db_link.Entry_details _Entity_db_link.Chimera_segment_ID _Entity_db_link.Seq_query_to_submitted_percent _Entity_db_link.Seq_subject_length _Entity_db_link.Seq_identity _Entity_db_link.Seq_positive _Entity_db_link.Seq_homology_expectation_val _Entity_db_link.Seq_align_begin _Entity_db_link.Seq_align_end _Entity_db_link.Seq_difference_details _Entity_db_link.Seq_alignment_details _Entity_db_link.Entry_ID _Entity_db_link.Entity_ID 1 no PDB 2FYJ . "Nmr Solution Structure Of Calcium-Loaded Lrp Double Module" . . . . . 100.00 82 100.00 100.00 7.27e-50 . . . . 17055 1 2 no PDB 2FYL . "Haddock Model Of The Complex Between Double Module Of Lrp, Cr56, And First Domain Of Receptor Associated Protein, Rap- D1" . . . . . 100.00 82 100.00 100.00 7.27e-50 . . . . 17055 1 stop_ loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . SER . 17055 1 2 . ALA . 17055 1 3 . ARG . 17055 1 4 . THR . 17055 1 5 . CYS . 17055 1 6 . PRO . 17055 1 7 . PRO . 17055 1 8 . ASN . 17055 1 9 . GLN . 17055 1 10 . PHE . 17055 1 11 . SER . 17055 1 12 . CYS . 17055 1 13 . ALA . 17055 1 14 . SER . 17055 1 15 . GLY . 17055 1 16 . ARG . 17055 1 17 . CYS . 17055 1 18 . ILE . 17055 1 19 . PRO . 17055 1 20 . ILE . 17055 1 21 . SER . 17055 1 22 . TRP . 17055 1 23 . THR . 17055 1 24 . CYS . 17055 1 25 . ASP . 17055 1 26 . LEU . 17055 1 27 . ASP . 17055 1 28 . ASP . 17055 1 29 . ASP . 17055 1 30 . CYS . 17055 1 31 . GLY . 17055 1 32 . ASP . 17055 1 33 . ARG . 17055 1 34 . SER . 17055 1 35 . ASP . 17055 1 36 . GLU . 17055 1 37 . SER . 17055 1 38 . ALA . 17055 1 39 . SER . 17055 1 40 . CYS . 17055 1 41 . ALA . 17055 1 42 . TYR . 17055 1 43 . PRO . 17055 1 44 . THR . 17055 1 45 . CYS . 17055 1 46 . PHE . 17055 1 47 . PRO . 17055 1 48 . LEU . 17055 1 49 . THR . 17055 1 50 . GLN . 17055 1 51 . PHE . 17055 1 52 . THR . 17055 1 53 . CYS . 17055 1 54 . ASN . 17055 1 55 . ASN . 17055 1 56 . GLY . 17055 1 57 . ARG . 17055 1 58 . CYS . 17055 1 59 . ILE . 17055 1 60 . ASN . 17055 1 61 . ILE . 17055 1 62 . ASN . 17055 1 63 . TRP . 17055 1 64 . ARG . 17055 1 65 . CYS . 17055 1 66 . ASP . 17055 1 67 . ASN . 17055 1 68 . ASP . 17055 1 69 . ASN . 17055 1 70 . ASP . 17055 1 71 . CYS . 17055 1 72 . GLY . 17055 1 73 . ASP . 17055 1 74 . ASN . 17055 1 75 . SER . 17055 1 76 . ASP . 17055 1 77 . GLU . 17055 1 78 . ALA . 17055 1 79 . GLY . 17055 1 80 . CYS . 17055 1 81 . SER . 17055 1 82 . HIS . 17055 1 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . SER 1 1 17055 1 . ALA 2 2 17055 1 . ARG 3 3 17055 1 . THR 4 4 17055 1 . CYS 5 5 17055 1 . PRO 6 6 17055 1 . PRO 7 7 17055 1 . ASN 8 8 17055 1 . GLN 9 9 17055 1 . PHE 10 10 17055 1 . SER 11 11 17055 1 . CYS 12 12 17055 1 . ALA 13 13 17055 1 . SER 14 14 17055 1 . GLY 15 15 17055 1 . ARG 16 16 17055 1 . CYS 17 17 17055 1 . ILE 18 18 17055 1 . PRO 19 19 17055 1 . ILE 20 20 17055 1 . SER 21 21 17055 1 . TRP 22 22 17055 1 . THR 23 23 17055 1 . CYS 24 24 17055 1 . ASP 25 25 17055 1 . LEU 26 26 17055 1 . ASP 27 27 17055 1 . ASP 28 28 17055 1 . ASP 29 29 17055 1 . CYS 30 30 17055 1 . GLY 31 31 17055 1 . ASP 32 32 17055 1 . ARG 33 33 17055 1 . SER 34 34 17055 1 . ASP 35 35 17055 1 . GLU 36 36 17055 1 . SER 37 37 17055 1 . ALA 38 38 17055 1 . SER 39 39 17055 1 . CYS 40 40 17055 1 . ALA 41 41 17055 1 . TYR 42 42 17055 1 . PRO 43 43 17055 1 . THR 44 44 17055 1 . CYS 45 45 17055 1 . PHE 46 46 17055 1 . PRO 47 47 17055 1 . LEU 48 48 17055 1 . THR 49 49 17055 1 . GLN 50 50 17055 1 . PHE 51 51 17055 1 . THR 52 52 17055 1 . CYS 53 53 17055 1 . ASN 54 54 17055 1 . ASN 55 55 17055 1 . GLY 56 56 17055 1 . ARG 57 57 17055 1 . CYS 58 58 17055 1 . ILE 59 59 17055 1 . ASN 60 60 17055 1 . ILE 61 61 17055 1 . ASN 62 62 17055 1 . TRP 63 63 17055 1 . ARG 64 64 17055 1 . CYS 65 65 17055 1 . ASP 66 66 17055 1 . ASN 67 67 17055 1 . ASP 68 68 17055 1 . ASN 69 69 17055 1 . ASP 70 70 17055 1 . CYS 71 71 17055 1 . GLY 72 72 17055 1 . ASP 73 73 17055 1 . ASN 74 74 17055 1 . SER 75 75 17055 1 . ASP 76 76 17055 1 . GLU 77 77 17055 1 . ALA 78 78 17055 1 . GLY 79 79 17055 1 . CYS 80 80 17055 1 . SER 81 81 17055 1 . HIS 82 82 17055 1 stop_ save_ save_RAPd1 _Entity.Sf_category entity _Entity.Sf_framecode RAPd1 _Entity.Entry_ID 17055 _Entity.ID 2 _Entity.BMRB_code . _Entity.Name RAPd1 _Entity.Type polymer _Entity.Polymer_common_type . _Entity.Polymer_type polypeptide(L) _Entity.Polymer_type_details . _Entity.Polymer_strand_ID . _Entity.Polymer_seq_one_letter_code_can . _Entity.Polymer_seq_one_letter_code ; GEEFRMEKLNQLWEKAQRLH LPPVRLAELHADLKIQERDE LAWKKLKLDGLDEDGEKEAR LIRNLNVILAKYGLDGKKDA R ; _Entity.Target_identifier . _Entity.Polymer_author_defined_seq . _Entity.Polymer_author_seq_details . _Entity.Ambiguous_conformational_states no _Entity.Ambiguous_chem_comp_sites no _Entity.Nstd_monomer no _Entity.Nstd_chirality no _Entity.Nstd_linkage no _Entity.Nonpolymer_comp_ID . _Entity.Nonpolymer_comp_label . _Entity.Number_of_monomers 81 _Entity.Number_of_nonpolymer_components . _Entity.Paramagnetic no _Entity.Thiol_state 'not present' _Entity.Src_method . _Entity.Parent_entity_ID . _Entity.Fragment . _Entity.Mutation . _Entity.EC_number . _Entity.Calc_isoelectric_point . _Entity.Formula_weight . _Entity.Formula_weight_exptl . _Entity.Formula_weight_exptl_meth . _Entity.Details . _Entity.DB_query_date . _Entity.DB_query_revised_last_date 2015-01-30 loop_ _Entity_db_link.Ordinal _Entity_db_link.Author_supplied _Entity_db_link.Database_code _Entity_db_link.Accession_code _Entity_db_link.Entry_mol_code _Entity_db_link.Entry_mol_name _Entity_db_link.Entry_experimental_method _Entity_db_link.Entry_structure_resolution _Entity_db_link.Entry_relation_type _Entity_db_link.Entry_details _Entity_db_link.Chimera_segment_ID _Entity_db_link.Seq_query_to_submitted_percent _Entity_db_link.Seq_subject_length _Entity_db_link.Seq_identity _Entity_db_link.Seq_positive _Entity_db_link.Seq_homology_expectation_val _Entity_db_link.Seq_align_begin _Entity_db_link.Seq_align_end _Entity_db_link.Seq_difference_details _Entity_db_link.Seq_alignment_details _Entity_db_link.Entry_ID _Entity_db_link.Entity_ID 1 no BMRB 16454 . RBD . . . . . 100.00 357 98.77 98.77 1.92e-44 . . . . 17055 2 2 no BMRB 5598 . Domain_1_of_RAP . . . . . 100.00 102 100.00 100.00 4.18e-48 . . . . 17055 2 3 no PDB 1LRE . "Receptor Associated Protein (Rap) Domain 1, Nmr, 20 Structures" . . . . . 100.00 81 100.00 100.00 1.76e-47 . . . . 17055 2 4 no PDB 1NRE . "Receptor Associated Protein (Rap) Domain 1, Nmr, Minimized Average Structure" . . . . . 100.00 81 100.00 100.00 1.76e-47 . . . . 17055 2 5 no PDB 1OP1 . "Solution Nmr Structure Of Domain 1 Of Receptor Associated Protein" . . . . . 100.00 82 100.00 100.00 1.41e-47 . . . . 17055 2 6 no PDB 1OV2 . "Ensemble Of The Solution Structures Of Domain One Of Receptor Associated Protein" . . . . . 100.00 99 100.00 100.00 5.91e-48 . . . . 17055 2 7 no PDB 2FYL . "Haddock Model Of The Complex Between Double Module Of Lrp, Cr56, And First Domain Of Receptor Associated Protein, Rap- D1" . . . . . 100.00 81 100.00 100.00 1.76e-47 . . . . 17055 2 8 no PDB 2P01 . "The Structure Of Receptor-Associated Protein(Rap)" . . . . . 100.00 323 100.00 100.00 2.57e-46 . . . . 17055 2 9 no PDB 2P03 . "The Structure Of Receptor-Associated Protein(Rap)" . . . . . 100.00 323 100.00 100.00 2.57e-46 . . . . 17055 2 10 no DBJ BAD96224 . "low density lipoprotein receptor-related protein associated protein 1 variant [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 1.05e-45 . . . . 17055 2 11 no DBJ BAD96247 . "low density lipoprotein receptor-related protein associated protein 1 variant [Homo sapiens]" . . . . . 100.00 357 98.77 98.77 1.54e-44 . . . . 17055 2 12 no DBJ BAE01566 . "unnamed protein product [Macaca fascicularis]" . . . . . 100.00 194 97.53 100.00 9.30e-46 . . . . 17055 2 13 no DBJ BAE87201 . "unnamed protein product [Macaca fascicularis]" . . . . . 100.00 358 97.53 100.00 2.09e-44 . . . . 17055 2 14 no DBJ BAF85010 . "unnamed protein product [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 1.10e-45 . . . . 17055 2 15 no EMBL CAH90295 . "hypothetical protein [Pongo abelii]" . . . . . 100.00 358 98.77 98.77 6.73e-45 . . . . 17055 2 16 no GB AAA51553 . "alpha-2-macroglobulin receptor-associated protein [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 17 no GB AAC67373 . "lipoprotein receptor associated protein [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 18 no GB AAI05075 . "Low density lipoprotein receptor-related protein associated protein 1 [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 19 no GB AAI12068 . "Low density lipoprotein receptor-related protein associated protein 1 [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 20 no GB AAY18903 . "lipoprotein receptor associated protein; alpha-2-macroglobulin receptor-associated protein [synthetic construct]" . . . . . 100.00 381 100.00 100.00 1.15e-45 . . . . 17055 2 21 no REF NP_001125136 . "alpha-2-macroglobulin receptor-associated protein precursor [Pongo abelii]" . . . . . 100.00 358 98.77 98.77 6.73e-45 . . . . 17055 2 22 no REF NP_001233320 . "alpha-2-macroglobulin receptor-associated protein precursor [Pan troglodytes]" . . . . . 100.00 357 100.00 100.00 8.61e-46 . . . . 17055 2 23 no REF NP_002328 . "alpha-2-macroglobulin receptor-associated protein precursor [Homo sapiens]" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 24 no REF XP_001085674 . "PREDICTED: alpha-2-macroglobulin receptor-associated protein [Macaca mulatta]" . . . . . 100.00 358 97.53 100.00 2.13e-44 . . . . 17055 2 25 no REF XP_003279069 . "PREDICTED: alpha-2-macroglobulin receptor-associated protein [Nomascus leucogenys]" . . . . . 100.00 460 98.77 100.00 3.35e-44 . . . . 17055 2 26 no SP P30533 . "RecName: Full=Alpha-2-macroglobulin receptor-associated protein; Short=Alpha-2-MRAP; AltName: Full=Low density lipoprotein rece" . . . . . 100.00 357 100.00 100.00 9.99e-46 . . . . 17055 2 stop_ loop_ _Entity_comp_index.ID _Entity_comp_index.Auth_seq_ID _Entity_comp_index.Comp_ID _Entity_comp_index.Comp_label _Entity_comp_index.Entry_ID _Entity_comp_index.Entity_ID 1 . GLY . 17055 2 2 . GLU . 17055 2 3 . GLU . 17055 2 4 . PHE . 17055 2 5 . ARG . 17055 2 6 . MET . 17055 2 7 . GLU . 17055 2 8 . LYS . 17055 2 9 . LEU . 17055 2 10 . ASN . 17055 2 11 . GLN . 17055 2 12 . LEU . 17055 2 13 . TRP . 17055 2 14 . GLU . 17055 2 15 . LYS . 17055 2 16 . ALA . 17055 2 17 . GLN . 17055 2 18 . ARG . 17055 2 19 . LEU . 17055 2 20 . HIS . 17055 2 21 . LEU . 17055 2 22 . PRO . 17055 2 23 . PRO . 17055 2 24 . VAL . 17055 2 25 . ARG . 17055 2 26 . LEU . 17055 2 27 . ALA . 17055 2 28 . GLU . 17055 2 29 . LEU . 17055 2 30 . HIS . 17055 2 31 . ALA . 17055 2 32 . ASP . 17055 2 33 . LEU . 17055 2 34 . LYS . 17055 2 35 . ILE . 17055 2 36 . GLN . 17055 2 37 . GLU . 17055 2 38 . ARG . 17055 2 39 . ASP . 17055 2 40 . GLU . 17055 2 41 . LEU . 17055 2 42 . ALA . 17055 2 43 . TRP . 17055 2 44 . LYS . 17055 2 45 . LYS . 17055 2 46 . LEU . 17055 2 47 . LYS . 17055 2 48 . LEU . 17055 2 49 . ASP . 17055 2 50 . GLY . 17055 2 51 . LEU . 17055 2 52 . ASP . 17055 2 53 . GLU . 17055 2 54 . ASP . 17055 2 55 . GLY . 17055 2 56 . GLU . 17055 2 57 . LYS . 17055 2 58 . GLU . 17055 2 59 . ALA . 17055 2 60 . ARG . 17055 2 61 . LEU . 17055 2 62 . ILE . 17055 2 63 . ARG . 17055 2 64 . ASN . 17055 2 65 . LEU . 17055 2 66 . ASN . 17055 2 67 . VAL . 17055 2 68 . ILE . 17055 2 69 . LEU . 17055 2 70 . ALA . 17055 2 71 . LYS . 17055 2 72 . TYR . 17055 2 73 . GLY . 17055 2 74 . LEU . 17055 2 75 . ASP . 17055 2 76 . GLY . 17055 2 77 . LYS . 17055 2 78 . LYS . 17055 2 79 . ASP . 17055 2 80 . ALA . 17055 2 81 . ARG . 17055 2 stop_ loop_ _Entity_poly_seq.Hetero _Entity_poly_seq.Mon_ID _Entity_poly_seq.Num _Entity_poly_seq.Comp_index_ID _Entity_poly_seq.Entry_ID _Entity_poly_seq.Entity_ID . GLY 1 1 17055 2 . GLU 2 2 17055 2 . GLU 3 3 17055 2 . PHE 4 4 17055 2 . ARG 5 5 17055 2 . MET 6 6 17055 2 . GLU 7 7 17055 2 . LYS 8 8 17055 2 . LEU 9 9 17055 2 . ASN 10 10 17055 2 . GLN 11 11 17055 2 . LEU 12 12 17055 2 . TRP 13 13 17055 2 . GLU 14 14 17055 2 . LYS 15 15 17055 2 . ALA 16 16 17055 2 . GLN 17 17 17055 2 . ARG 18 18 17055 2 . LEU 19 19 17055 2 . HIS 20 20 17055 2 . LEU 21 21 17055 2 . PRO 22 22 17055 2 . PRO 23 23 17055 2 . VAL 24 24 17055 2 . ARG 25 25 17055 2 . LEU 26 26 17055 2 . ALA 27 27 17055 2 . GLU 28 28 17055 2 . LEU 29 29 17055 2 . HIS 30 30 17055 2 . ALA 31 31 17055 2 . ASP 32 32 17055 2 . LEU 33 33 17055 2 . LYS 34 34 17055 2 . ILE 35 35 17055 2 . GLN 36 36 17055 2 . GLU 37 37 17055 2 . ARG 38 38 17055 2 . ASP 39 39 17055 2 . GLU 40 40 17055 2 . LEU 41 41 17055 2 . ALA 42 42 17055 2 . TRP 43 43 17055 2 . LYS 44 44 17055 2 . LYS 45 45 17055 2 . LEU 46 46 17055 2 . LYS 47 47 17055 2 . LEU 48 48 17055 2 . ASP 49 49 17055 2 . GLY 50 50 17055 2 . LEU 51 51 17055 2 . ASP 52 52 17055 2 . GLU 53 53 17055 2 . ASP 54 54 17055 2 . GLY 55 55 17055 2 . GLU 56 56 17055 2 . LYS 57 57 17055 2 . GLU 58 58 17055 2 . ALA 59 59 17055 2 . ARG 60 60 17055 2 . LEU 61 61 17055 2 . ILE 62 62 17055 2 . ARG 63 63 17055 2 . ASN 64 64 17055 2 . LEU 65 65 17055 2 . ASN 66 66 17055 2 . VAL 67 67 17055 2 . ILE 68 68 17055 2 . LEU 69 69 17055 2 . ALA 70 70 17055 2 . LYS 71 71 17055 2 . TYR 72 72 17055 2 . GLY 73 73 17055 2 . LEU 74 74 17055 2 . ASP 75 75 17055 2 . GLY 76 76 17055 2 . LYS 77 77 17055 2 . LYS 78 78 17055 2 . ASP 79 79 17055 2 . ALA 80 80 17055 2 . ARG 81 81 17055 2 stop_ save_ #################### # Natural source # #################### save_natural_source _Entity_natural_src_list.Sf_category natural_source _Entity_natural_src_list.Sf_framecode natural_source _Entity_natural_src_list.Entry_ID 17055 _Entity_natural_src_list.ID 1 loop_ _Entity_natural_src.ID _Entity_natural_src.Entity_ID _Entity_natural_src.Entity_label _Entity_natural_src.Entity_chimera_segment_ID _Entity_natural_src.NCBI_taxonomy_ID _Entity_natural_src.Type _Entity_natural_src.Common _Entity_natural_src.Organism_name_scientific _Entity_natural_src.Organism_name_common _Entity_natural_src.Organism_acronym _Entity_natural_src.ICTVdb_decimal_code _Entity_natural_src.Superkingdom _Entity_natural_src.Kingdom _Entity_natural_src.Genus _Entity_natural_src.Species _Entity_natural_src.Strain _Entity_natural_src.Variant _Entity_natural_src.Subvariant _Entity_natural_src.Organ _Entity_natural_src.Tissue _Entity_natural_src.Tissue_fraction _Entity_natural_src.Cell_line _Entity_natural_src.Cell_type _Entity_natural_src.ATCC_number _Entity_natural_src.Organelle _Entity_natural_src.Cellular_location _Entity_natural_src.Fragment _Entity_natural_src.Fraction _Entity_natural_src.Secretion _Entity_natural_src.Plasmid _Entity_natural_src.Plasmid_details _Entity_natural_src.Gene_mnemonic _Entity_natural_src.Dev_stage _Entity_natural_src.Details _Entity_natural_src.Citation_ID _Entity_natural_src.Citation_label _Entity_natural_src.Entry_ID _Entity_natural_src.Entity_natural_src_list_ID 1 1 $CR56 . 9606 organism . 'Homo sapiens' Human . . Eukaryota Metazoa Homo sapiens . . . . . . . . . . . . . . . . . . . . . 17055 1 2 2 $RAPd1 . 9606 organism . 'Homo sapiens' Human . . Eukaryota Metazoa Homo sapiens . . . . . . . . . . . . . . . . . . . . . 17055 1 stop_ save_ ######################### # Experimental source # ######################### save_experimental_source _Entity_experimental_src_list.Sf_category experimental_source _Entity_experimental_src_list.Sf_framecode experimental_source _Entity_experimental_src_list.Entry_ID 17055 _Entity_experimental_src_list.ID 1 loop_ _Entity_experimental_src.ID _Entity_experimental_src.Entity_ID _Entity_experimental_src.Entity_label _Entity_experimental_src.Entity_chimera_segment_ID _Entity_experimental_src.Production_method _Entity_experimental_src.Host_org_scientific_name _Entity_experimental_src.Host_org_name_common _Entity_experimental_src.Host_org_details _Entity_experimental_src.Host_org_NCBI_taxonomy_ID _Entity_experimental_src.Host_org_genus _Entity_experimental_src.Host_org_species _Entity_experimental_src.Host_org_strain _Entity_experimental_src.Host_org_variant _Entity_experimental_src.Host_org_subvariant _Entity_experimental_src.Host_org_organ _Entity_experimental_src.Host_org_tissue _Entity_experimental_src.Host_org_tissue_fraction _Entity_experimental_src.Host_org_cell_line _Entity_experimental_src.Host_org_cell_type _Entity_experimental_src.Host_org_cellular_location _Entity_experimental_src.Host_org_organelle _Entity_experimental_src.Host_org_gene _Entity_experimental_src.Host_org_culture_collection _Entity_experimental_src.Host_org_ATCC_number _Entity_experimental_src.Vector_type _Entity_experimental_src.PDBview_host_org_vector_name _Entity_experimental_src.PDBview_plasmid_name _Entity_experimental_src.Vector_name _Entity_experimental_src.Vector_details _Entity_experimental_src.Vendor_name _Entity_experimental_src.Host_org_dev_stage _Entity_experimental_src.Details _Entity_experimental_src.Citation_ID _Entity_experimental_src.Citation_label _Entity_experimental_src.Entry_ID _Entity_experimental_src.Entity_experimental_src_list_ID 1 1 $CR56 . 'recombinant technology' 'Escherichia coli' . . . Escherichia coli BL21 DE3 . . . . . . . . . . . . . . na . . . . . . 17055 1 2 2 $RAPd1 . 'recombinant technology' 'Escherichia coli' . . . Escherichia coli BL21 DE3 . . . . . . . . . . . . . . na . . . . . . 17055 1 stop_ save_ ##################################### # Sample contents and methodology # ##################################### ######################## # Sample description # ######################## save_sample_1 _Sample.Sf_category sample _Sample.Sf_framecode sample_1 _Sample.Entry_ID 17055 _Sample.ID 1 _Sample.Type solution _Sample.Sub_type . _Sample.Details 'RAPd1 was titrated into solution in 10 steps' _Sample.Aggregate_sample_number 10 _Sample.Solvent_system '90% H2O/10% D2O' _Sample.Preparation_date . _Sample.Preparation_expiration_date . _Sample.Polycrystallization_protocol . _Sample.Single_crystal_protocol . _Sample.Crystal_grow_apparatus . _Sample.Crystal_grow_atmosphere . _Sample.Crystal_grow_details . _Sample.Crystal_grow_method . _Sample.Crystal_grow_method_cit_ID . _Sample.Crystal_grow_pH . _Sample.Crystal_grow_pH_range . _Sample.Crystal_grow_pressure . _Sample.Crystal_grow_pressure_esd . _Sample.Crystal_grow_seeding . _Sample.Crystal_grow_seeding_cit_ID . _Sample.Crystal_grow_temp . _Sample.Crystal_grow_temp_details . _Sample.Crystal_grow_temp_esd . _Sample.Crystal_grow_time . _Sample.Oriented_sample_prep_protocol . _Sample.Lyophilization_cryo_protectant . _Sample.Storage_protocol . loop_ _Sample_component.ID _Sample_component.Mol_common_name _Sample_component.Isotopic_labeling _Sample_component.Assembly_ID _Sample_component.Assembly_label _Sample_component.Entity_ID _Sample_component.Entity_label _Sample_component.Product_ID _Sample_component.Type _Sample_component.Concentration_val _Sample_component.Concentration_val_min _Sample_component.Concentration_val_max _Sample_component.Concentration_val_units _Sample_component.Concentration_val_err _Sample_component.Vendor _Sample_component.Vendor_product_name _Sample_component.Vendor_product_code _Sample_component.Entry_ID _Sample_component.Sample_ID 1 CR56 [U-15N] . . 1 $CR56 . . 20 . . uM . . . . 17055 1 2 RAPd1 'natural abundance' . . 2 $RAPd1 . . . 0 40 uM . . . . 17055 1 3 'sodium chloride' 'natural abundance' . . . . . . 100 . . mM . . . . 17055 1 4 'calcium chloride' 'natural abundance' . . . . . . 10 . . mM . . . . 17055 1 5 'magnesium chloride' 'natural abundance' . . . . . . 1 . . mM . . . . 17055 1 6 H2O 'natural abundance' . . . . . . 90 . . % . . . . 17055 1 7 D2O 'natural abundance' . . . . . . 10 . . % . . . . 17055 1 stop_ save_ ####################### # Sample conditions # ####################### save_sample_conditions_1 _Sample_condition_list.Sf_category sample_conditions _Sample_condition_list.Sf_framecode sample_conditions_1 _Sample_condition_list.Entry_ID 17055 _Sample_condition_list.ID 1 _Sample_condition_list.Details . loop_ _Sample_condition_variable.Type _Sample_condition_variable.Val _Sample_condition_variable.Val_err _Sample_condition_variable.Val_units _Sample_condition_variable.Entry_ID _Sample_condition_variable.Sample_condition_list_ID pH 7.0 . pH 17055 1 pressure 1 . atm 17055 1 temperature 298 . K 17055 1 stop_ save_ ############################ # Computer software used # ############################ save_NACCESS _Software.Sf_category software _Software.Sf_framecode NACCESS _Software.Entry_ID 17055 _Software.ID 1 _Software.Name NACCESS _Software.Version . _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Hubbard, S. J. and Thornton, J. M. (1993)' . . 17055 1 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'data analysis' 17055 1 stop_ save_ save_NMRPipe _Software.Sf_category software _Software.Sf_framecode NMRPipe _Software.Entry_ID 17055 _Software.ID 2 _Software.Name NMRPipe _Software.Version . _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' . . 17055 2 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID processing 17055 2 stop_ save_ save_PRONTO3D _Software.Sf_category software _Software.Sf_framecode PRONTO3D _Software.Entry_ID 17055 _Software.ID 3 _Software.Name PRONTO3D _Software.Version . _Software.Details . loop_ _Vendor.Name _Vendor.Address _Vendor.Electronic_address _Vendor.Entry_ID _Vendor.Software_ID 'Kj r, M., Andersen, K. V. & Poulsen, F. M. (1994).' . . 17055 3 stop_ loop_ _Task.Task _Task.Entry_ID _Task.Software_ID 'data analysis' 17055 3 stop_ save_ ######################### # Experimental detail # ######################### ################################## # NMR Spectrometer definitions # ################################## save_spectrometer_1 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode spectrometer_1 _NMR_spectrometer.Entry_ID 17055 _NMR_spectrometer.ID 1 _NMR_spectrometer.Details . _NMR_spectrometer.Manufacturer Varian _NMR_spectrometer.Model Unity _NMR_spectrometer.Serial_number . _NMR_spectrometer.Field_strength 750 save_ save_spectrometer_2 _NMR_spectrometer.Sf_category NMR_spectrometer _NMR_spectrometer.Sf_framecode spectrometer_2 _NMR_spectrometer.Entry_ID 17055 _NMR_spectrometer.ID 2 _NMR_spectrometer.Details . _NMR_spectrometer.Manufacturer Varian _NMR_spectrometer.Model Unity _NMR_spectrometer.Serial_number . _NMR_spectrometer.Field_strength 800 save_ save_NMR_spectrometer_list _NMR_spectrometer_list.Sf_category NMR_spectrometer_list _NMR_spectrometer_list.Sf_framecode NMR_spectrometer_list _NMR_spectrometer_list.Entry_ID 17055 _NMR_spectrometer_list.ID 1 loop_ _NMR_spectrometer_view.ID _NMR_spectrometer_view.Name _NMR_spectrometer_view.Manufacturer _NMR_spectrometer_view.Model _NMR_spectrometer_view.Serial_number _NMR_spectrometer_view.Field_strength _NMR_spectrometer_view.Details _NMR_spectrometer_view.Citation_ID _NMR_spectrometer_view.Citation_label _NMR_spectrometer_view.Entry_ID _NMR_spectrometer_view.NMR_spectrometer_list_ID 1 spectrometer_1 Varian Unity . 750 . . . 17055 1 2 spectrometer_2 Varian Unity . 800 . . . 17055 1 stop_ save_ ############################# # NMR applied experiments # ############################# save_experiment_list _Experiment_list.Sf_category experiment_list _Experiment_list.Sf_framecode experiment_list _Experiment_list.Entry_ID 17055 _Experiment_list.ID 1 _Experiment_list.Details . loop_ _Experiment.ID _Experiment.Name _Experiment.Raw_data_flag _Experiment.NMR_spec_expt_ID _Experiment.NMR_spec_expt_label _Experiment.MS_expt_ID _Experiment.MS_expt_label _Experiment.SAXS_expt_ID _Experiment.SAXS_expt_label _Experiment.FRET_expt_ID _Experiment.FRET_expt_label _Experiment.EMR_expt_ID _Experiment.EMR_expt_label _Experiment.Sample_ID _Experiment.Sample_label _Experiment.Sample_state _Experiment.Sample_volume _Experiment.Sample_volume_units _Experiment.Sample_condition_list_ID _Experiment.Sample_condition_list_label _Experiment.Sample_spinning_rate _Experiment.Sample_angle _Experiment.NMR_tube_type _Experiment.NMR_spectrometer_ID _Experiment.NMR_spectrometer_label _Experiment.NMR_spectrometer_probe_ID _Experiment.NMR_spectrometer_probe_label _Experiment.NMR_spectral_processing_ID _Experiment.NMR_spectral_processing_label _Experiment.Mass_spectrometer_ID _Experiment.Mass_spectrometer_label _Experiment.Xray_instrument_ID _Experiment.Xray_instrument_label _Experiment.Fluorescence_instrument_ID _Experiment.Fluorescence_instrument_label _Experiment.EMR_instrument_ID _Experiment.EMR_instrument_label _Experiment.Chromatographic_system_ID _Experiment.Chromatographic_system_label _Experiment.Chromatographic_column_ID _Experiment.Chromatographic_column_label _Experiment.Entry_ID _Experiment.Experiment_list_ID 1 '2D 1H-15N HSQC' no . . . . . . . . . . 1 $sample_1 isotropic . . 1 $sample_conditions_1 . . . . . . . . . . . . . . . . . . . . . 17055 1 stop_ save_ save_binding_data _Binding_value_list.Sf_category binding_data _Binding_value_list.Sf_framecode binding_data _Binding_value_list.Entry_ID 17055 _Binding_value_list.ID 1 _Binding_value_list.Sample_condition_list_ID 1 _Binding_value_list.Sample_condition_list_label $sample_conditions_1 _Binding_value_list.Details . _Binding_value_list.Text_data_format . _Binding_value_list.Text_data . loop_ _Binding_experiment.Experiment_ID _Binding_experiment.Experiment_name _Binding_experiment.Sample_ID _Binding_experiment.Sample_label _Binding_experiment.Sample_state _Binding_experiment.Entry_ID _Binding_experiment.Binding_value_list_ID 1 '2D 1H-15N HSQC' 1 $sample_1 isotropic 17055 1 stop_ loop_ _Binding_software.Software_ID _Binding_software.Software_label _Binding_software.Method_ID _Binding_software.Method_label _Binding_software.Entry_ID _Binding_software.Binding_value_list_ID 1 $NACCESS . . 17055 1 2 $NMRPipe . . 17055 1 3 $PRONTO3D . . 17055 1 stop_ loop_ _Binding_result.ID _Binding_result.Experiment_ID _Binding_result.Assembly_ID _Binding_result.Atm_obs_assembly_atom_ID _Binding_result.Atm_obs_entity_assembly_ID _Binding_result.Atm_obs_entity_ID _Binding_result.Atm_obs_comp_index_ID _Binding_result.Atm_obs_seq_ID _Binding_result.Atm_obs_comp_ID _Binding_result.Atm_obs_atom_ID _Binding_result.Atm_obs_atom_type _Binding_result.Atm_obs_atom_isotope_number _Binding_result.Resonance_ID _Binding_result.Atm_obs_auth_entity_assembly_ID _Binding_result.Atm_obs_auth_seq_ID _Binding_result.Atm_obs_auth_comp_ID _Binding_result.Atm_obs_auth_atom_ID _Binding_result.Expt_observed_param _Binding_result.Val_type _Binding_result.Val _Binding_result.Val_err _Binding_result.Val_units _Binding_result.Entry_ID _Binding_result.Binding_value_list_ID 1 1 1 . 1 1 . . . . . . . . . . . 'chemical shifts' Kd 2 . uM 17055 1 stop_ loop_ _Binding_partners.Binding_result_ID _Binding_partners.Assembly_ID _Binding_partners.Entity_assembly_ID _Binding_partners.Entity_assembly_name _Binding_partners.Entity_ID _Binding_partners.Entity_label _Binding_partners.Entry_ID _Binding_partners.Binding_value_list_ID 1 1 1 CR56 1 $CR56 17055 1 1 1 2 RAPd1 2 $RAPd1 17055 1 stop_ save_