#!/bin/csh # # nmrPipe script for processing 3D HNCACB spectrum # acquired with the hncacbgp3d pulse sequence # # Phasing note: for initial phasing on a single FID, select # the FOURTH plane (test004.fid) and first FID for max signal # xyz2pipe -in ./fid/test%03d.fid -x \ | nmrPipe -fn POLY -time \ | nmrPipe -fn SP -off 0.5 -end 1 -c 0.5 \ | nmrPipe -fn ZF -size 1024 \ | nmrPipe -fn FT -verb \ | nmrPipe -fn PS -p0 -286.4 -p1 0 \ | nmrPipe -fn EXT -left -di -sw \ | nmrPipe -fn POLY -auto \ | nmrPipe -fn ZTP \ | nmrPipe -fn SP -off 0.5 -end 1.0 -c 0.5 \ | nmrPipe -fn ZF -size 128 \ | nmrPipe -fn FT -verb -auto -di \ | nmrPipe -fn YTP \ | nmrPipe -fn LP -ps0-0 -ord 10 \ | nmrPipe -fn SP -off 0.5 -pow 2 -end 1.0 -c 0.5 \ | nmrPipe -fn ZF -size 128 \ | nmrPipe -fn FT -verb -auto \ | nmrPipe -fn REV -di -sw \ | nmrPipe -fn ZTP \ | nmrPipe -out test.ft2 -ov pipe2xeasy -f 0.001 -out hbhaconh < test.ft2 # The following line can be substituted for the pipe2xeasy line # if nmrpipe format processed data are required (e.g. for fine adjustment # of phasing params) #|pipe2xyz -verb -ov -out ./dat/test%03d.dat -x