data_15040
#######################
# Entry information #
#######################
save_entry_information
_Saveframe_category entry_information
_Entry_title
;
DPC micelle-bound NMR structures of Tritrp2
;
_BMRB_accession_number 15040
_BMRB_flat_file_name bmr15040.str
_Entry_type original
_Submission_date 2006-11-20
_Accession_date 2006-11-20
_Entry_origination author
_NMR_STAR_version 2.1.1
_Experimental_method NMR
_Details .
loop_
_Author_ordinal
_Author_family_name
_Author_given_name
_Author_middle_initials
_Author_family_title
1 Schibli D. J. .
2 Nguyen L. T. .
stop_
loop_
_Saveframe_category_type
_Saveframe_category_type_count
assigned_chemical_shifts 1
stop_
loop_
_Data_type
_Data_type_count
"1H chemical shifts" 97
stop_
loop_
_Revision_date
_Revision_keyword
_Revision_author
_Revision_detail
2006-12-18 original author .
stop_
_Original_release_date 2006-12-18
save_
#############################
# Citation for this entry #
#############################
save_citations
_Saveframe_category entry_citation
_Citation_full .
_Citation_title
;
Structure-function analysis of tritrpticin analogs: potential relationships
between antimicrobial activities, model membrane interactions and their
micelle-bound NMR structures
;
_Citation_status published
_Citation_type journal
_CAS_abstract_code .
_MEDLINE_UI_code .
_PubMed_ID 16997878
loop_
_Author_ordinal
_Author_family_name
_Author_given_name
_Author_middle_initials
_Author_family_title
1 Schibli D. J. .
2 Nguyen L. T. .
3 Kernaghan S. D. .
4 Rekdal O. . .
5 Vogel H. J. .
stop_
_Journal_abbreviation 'Biophys. J.'
_Journal_name_full 'Biophysical Journal'
_Journal_volume 91
_Journal_issue 12
_Journal_ISSN 0006-3495
_Journal_CSD 0353
_Book_chapter_title .
_Book_volume .
_Book_series .
_Book_ISBN .
_Conference_state_province .
_Conference_abstract_number .
_Page_first 4413
_Page_last 4426
_Year 2006
_Details .
save_
##################################
# Molecular system description #
##################################
save_assembly
_Saveframe_category molecular_system
_Mol_system_name 13-mer_analogue_of_Prophenin-1_containing_WWW
_Enzyme_commission_number .
loop_
_Mol_system_component_name
_Mol_label
13-mer_analogue_of_Prophenin-1_containing_WWW $13-mer_analogue_of_Prophenin-1_containing_WWW
stop_
_System_molecular_weight .
_System_physical_state native
_System_oligomer_state ?
_System_paramagnetic no
_System_thiol_state 'not present'
_Database_query_date .
_Details .
save_
########################
# Monomeric polymers #
########################
save_13-mer_analogue_of_Prophenin-1_containing_WWW
_Saveframe_category monomeric_polymer
_Mol_type polymer
_Mol_polymer_class protein
_Name_common 13-mer_analogue_of_Prophenin-1_containing_WWW
_Molecular_mass .
_Mol_thiol_state 'not present'
_Details .
##############################
# Polymer residue sequence #
##############################
_Residue_count 14
_Mol_residue_sequence VKKFPWWWPFLKKX
loop_
_Residue_seq_code
_Residue_label
1 VAL 2 LYS 3 LYS 4 PHE 5 PRO
6 TRP 7 TRP 8 TRP 9 PRO 10 PHE
11 LEU 12 LYS 13 LYS 14 NH2
stop_
_Sequence_homology_query_date .
_Sequence_homology_query_revised_last_date .
save_
######################
# Polymer residues #
######################
save_chem_comp_NH2
_Saveframe_category polymer_residue
_Mol_type non-polymer
_Name_common 'AMINO GROUP'
_BMRB_code .
_PDB_code NH2
_Standard_residue_derivative .
_Molecular_mass 16.023
_Mol_paramagnetic .
_Details
;
Information obtained from PDB's Chemical Component Dictionary
at http://wwpdb-remediation.rutgers.edu/downloads.html
Downloaded on Tue Oct 4 20:40:07 2011
;
loop_
_Atom_name
_PDB_atom_name
_Atom_type
_Atom_chirality
_Atom_charge
_Atom_oxidation_number
_Atom_unpaired_electrons
N N N . 0 . ?
HN1 HN1 H . 0 . ?
HN2 HN2 H . 0 . ?
stop_
loop_
_Bond_order
_Bond_atom_one_atom_name
_Bond_atom_two_atom_name
_PDB_bond_atom_one_atom_name
_PDB_bond_atom_two_atom_name
SING N HN1 ? ?
SING N HN2 ? ?
stop_
save_
####################
# Natural source #
####################
save_natural_source
_Saveframe_category natural_source
loop_
_Mol_label
_Organism_name_common
_NCBI_taxonomy_ID
_Superkingdom
_Kingdom
_Genus
_Species
$13-mer_analogue_of_Prophenin-1_containing_WWW . . . . . .
stop_
save_
#########################
# Experimental source #
#########################
save_experimental_source
_Saveframe_category experimental_source
loop_
_Mol_label
_Production_method
_Host_organism_name_common
_Genus
_Species
_Strain
_Vector_name
$13-mer_analogue_of_Prophenin-1_containing_WWW 'chemical synthesis' . . . . .
stop_
save_
#####################################
# Sample contents and methodology #
#####################################
########################
# Sample description #
########################
save_sample
_Saveframe_category sample
_Sample_type solution
_Details '90% H2O, 10% D2O, 150 mM DPC-d38'
loop_
_Mol_label
_Concentration_value
_Concentration_value_units
_Concentration_min_value
_Concentration_max_value
_Isotopic_labeling
$13-mer_analogue_of_Prophenin-1_containing_WWW . mM 1 2 'natural abundance'
DPC-d38 150 mM . . .
H2O 90 % . . .
D2O 10 % . . .
stop_
save_
############################
# Computer software used #
############################
save_NMRView
_Saveframe_category software
_Name NMRView
_Version .
loop_
_Vendor
_Address
_Electronic_address
'B Johnson, One Moon Scientific' . .
stop_
loop_
_Task
'data analysis'
stop_
_Details .
save_
#########################
# Experimental detail #
#########################
##################################
# NMR Spectrometer definitions #
##################################
save_spectrometer_1
_Saveframe_category NMR_spectrometer
_Manufacturer Bruker
_Model Avance
_Field_strength 700
_Details .
save_
#############################
# NMR applied experiments #
#############################
save_1H_NOESY_1
_Saveframe_category NMR_applied_experiment
_Experiment_name '1H NOESY'
_Sample_label $sample
save_
save_1H_TOCSY_2
_Saveframe_category NMR_applied_experiment
_Experiment_name '1H TOCSY'
_Sample_label $sample
save_
save_1H_COSY_3
_Saveframe_category NMR_applied_experiment
_Experiment_name '1H COSY'
_Sample_label $sample
save_
#######################
# Sample conditions #
#######################
save_sample_conditions_1
_Saveframe_category sample_conditions
_Details .
loop_
_Variable_type
_Variable_value
_Variable_value_error
_Variable_value_units
pH 4.6 . pH
temperature 310 . K
stop_
save_
####################
# NMR parameters #
####################
##############################
# Assigned chemical shifts #
##############################
################################
# Chemical shift referencing #
################################
save_chemical_shift_reference_1
_Saveframe_category chemical_shift_reference
_Details .
loop_
_Mol_common_name
_Atom_type
_Atom_isotope_number
_Atom_group
_Chem_shift_units
_Chem_shift_value
_Reference_method
_Reference_type
_External_reference_sample_geometry
_External_reference_location
_External_reference_axis
_Indirect_shift_ratio
_Indirect_shift_ratio_citation_label
_Correction_value_citation_label
DSS H 1 'methyl protons' ppm 0.00 internal direct . . . 1 $citations $citations
stop_
save_
###################################
# Assigned chemical shift lists #
###################################
###################################################################
# Chemical Shift Ambiguity Index Value Definitions #
# #
# The values other than 1 are used for those atoms with different #
# chemical shifts that cannot be assigned to stereospecific atoms #
# or to specific residues or chains. #
# #
# Index Value Definition #
# #
# 1 Unique (including isolated methyl protons, #
# geminal atoms, and geminal methyl #
# groups with identical chemical shifts) #
# (e.g. ILE HD11, HD12, HD13 protons) #
# 2 Ambiguity of geminal atoms or geminal methyl #
# proton groups (e.g. ASP HB2 and HB3 #
# protons, LEU CD1 and CD2 carbons, or #
# LEU HD11, HD12, HD13 and HD21, HD22, #
# HD23 methyl protons) #
# 3 Aromatic atoms on opposite sides of #
# symmetrical rings (e.g. TYR HE1 and HE2 #
# protons) #
# 4 Intraresidue ambiguities (e.g. LYS HG and #
# HD protons or TRP HZ2 and HZ3 protons) #
# 5 Interresidue ambiguities (LYS 12 vs. LYS 27) #
# 6 Intermolecular ambiguities (e.g. ASP 31 CA #
# in monomer 1 and ASP 31 CA in monomer 2 #
# of an asymmetrical homodimer, duplex #
# DNA assignments, or other assignments #
# that may apply to atoms in one or more #
# molecule in the molecular assembly) #
# 9 Ambiguous, specific ambiguity not defined #
# #
###################################################################
save_assigned_chem_shift_list_1
_Saveframe_category assigned_chemical_shifts
_Details .
loop_
_Experiment_label
'1H NOESY'
'1H TOCSY'
'1H COSY'
stop_
loop_
_Sample_label
$sample
stop_
_Sample_conditions_label $sample_conditions_1
_Chem_shift_reference_set_label $chemical_shift_reference_1
_Mol_system_component_name 13-mer_analogue_of_Prophenin-1_containing_WWW
_Text_data_format .
_Text_data .
loop_
_Atom_shift_assign_ID
_Residue_author_seq_code
_Residue_seq_code
_Residue_label
_Atom_name
_Atom_type
_Chem_shift_value
_Chem_shift_value_error
_Chem_shift_ambiguity_code
1 1 1 VAL HA H 3.742 . .
2 1 1 VAL HB H 2.118 . .
3 1 1 VAL HG1 H 0.917 . .
4 2 2 LYS H H 8.072 . .
5 2 2 LYS HA H 4.254 . .
6 2 2 LYS HB2 H 1.794 . .
7 2 2 LYS HG2 H 1.454 . .
8 2 2 LYS HG3 H 1.323 . .
9 2 2 LYS HD2 H 1.666 . .
10 2 2 LYS HE2 H 2.943 . .
11 3 3 LYS H H 8.016 . .
12 3 3 LYS HA H 4.233 . .
13 3 3 LYS HB2 H 1.640 . .
14 3 3 LYS HG2 H 1.292 . .
15 3 3 LYS HG3 H 1.254 . .
16 3 3 LYS HD2 H 1.562 . .
17 3 3 LYS HE2 H 2.944 . .
18 4 4 PHE H H 8.127 . .
19 4 4 PHE HA H 4.341 . .
20 4 4 PHE HB2 H 2.521 . .
21 4 4 PHE HB3 H 2.596 . .
22 4 4 PHE HD1 H 6.605 . .
23 4 4 PHE HE1 H 6.990 . .
24 4 4 PHE HZ H 7.102 . .
25 5 5 PRO HA H 4.342 . .
26 5 5 PRO HB2 H 1.764 . .
27 5 5 PRO HB3 H 0.320 . .
28 5 5 PRO HG2 H 1.551 . .
29 5 5 PRO HG3 H 1.049 . .
30 5 5 PRO HD2 H 3.411 . .
31 5 5 PRO HD3 H 2.821 . .
32 6 6 TRP H H 8.294 . .
33 6 6 TRP HA H 4.339 . .
34 6 6 TRP HB2 H 3.526 . .
35 6 6 TRP HB3 H 3.342 . .
36 6 6 TRP HD1 H 7.696 . .
37 6 6 TRP HE1 H 11.160 . .
38 6 6 TRP HE3 H 7.568 . .
39 6 6 TRP HZ2 H 7.557 . .
40 6 6 TRP HZ3 H 7.037 . .
41 6 6 TRP HH2 H 7.121 . .
42 7 7 TRP H H 5.918 . .
43 7 7 TRP HA H 4.160 . .
44 7 7 TRP HB2 H 3.073 . .
45 7 7 TRP HB3 H 1.355 . .
46 7 7 TRP HD1 H 6.061 . .
47 7 7 TRP HE1 H 10.742 . .
48 7 7 TRP HE3 H 7.143 . .
49 7 7 TRP HZ2 H 7.431 . .
50 7 7 TRP HZ3 H 7.007 . .
51 7 7 TRP HH2 H 7.164 . .
52 8 8 TRP H H 7.294 . .
53 8 8 TRP HA H 4.405 . .
54 8 8 TRP HB2 H 3.074 . .
55 8 8 TRP HB3 H 2.758 . .
56 8 8 TRP HD1 H 6.646 . .
57 8 8 TRP HE1 H 10.031 . .
58 8 8 TRP HE3 H 7.202 . .
59 8 8 TRP HZ2 H 7.371 . .
60 8 8 TRP HZ3 H 7.020 . .
61 8 8 TRP HH2 H 7.119 . .
62 9 9 PRO HA H 4.098 . .
63 9 9 PRO HB2 H 2.045 . .
64 9 9 PRO HB3 H 1.359 . .
65 9 9 PRO HG2 H 1.686 . .
66 9 9 PRO HG3 H 1.516 . .
67 9 9 PRO HD2 H 3.645 . .
68 9 9 PRO HD3 H 3.375 . .
69 10 10 PHE H H 6.952 . .
70 10 10 PHE HA H 4.373 . .
71 10 10 PHE HB2 H 3.228 . .
72 10 10 PHE HB3 H 2.995 . .
73 10 10 PHE HD1 H 7.159 . .
74 10 10 PHE HE1 H 7.356 . .
75 10 10 PHE HZ H 7.298 . .
76 11 11 LEU H H 7.686 . .
77 11 11 LEU HA H 4.178 . .
78 11 11 LEU HB2 H 1.597 . .
79 11 11 LEU HB3 H 1.531 . .
80 11 11 LEU HG H 1.699 . .
81 11 11 LEU HD1 H 0.843 . .
82 12 12 LYS H H 7.656 . .
83 12 12 LYS HA H 4.058 . .
84 12 12 LYS HB2 H 1.607 . .
85 12 12 LYS HG2 H 1.191 . .
86 12 12 LYS HD2 H 1.515 . .
87 12 12 LYS HE2 H 2.858 . .
88 13 13 LYS H H 7.862 . .
89 13 13 LYS HA H 4.167 . .
90 13 13 LYS HB2 H 1.814 . .
91 13 13 LYS HB3 H 1.766 . .
92 13 13 LYS HG2 H 1.446 . .
93 13 13 LYS HG3 H 1.515 . .
94 13 13 LYS HD2 H 1.614 . .
95 13 13 LYS HE2 H 2.930 . .
96 14 14 NH2 HT1 H 7.141 . .
97 14 14 NH2 HT2 H 6.922 . .
stop_
save_