BMRB Entry 7433

Name: Extracellular CD147 (EMMPRIN): Isoform -3
Published: 2009-06-23

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7433

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Extracellular CD147 (EMMPRIN): Isoform -3

Deposition date:

2009-05-28

Original release date:

2009-06-23

Authors:

Schelgel, Jennifer; Redzic, Jasmina; Porter, Christopher; Yurchenko, Vyacheslav; Bukrinsky, Michael; Armstrong, Geoffrey; Zhang, Fengli; Isern, Nancy; Degregori, James; Hodges, Robert; Eisenmesser, Elan

Citation:

Citation: Schlegel, Jennifer; Redzic, Jasmina; Porter, Christopher; Yurchenko, Vyacheslav; Bukrinsky, Michael; Labeikovsky, Wladimir; Armstrong, Geoffrey; Zhang, Fengli; Isern, Nancy; DeGregori, James; Hodges, Robert; Eisenmesser, Elan Zohar. "Solution characterization of the extracellular region of CD147 and its interaction with its enzyme ligand cyclophilin A." J. Mol. Biol. 391, 518-535 (2009).
PubMed: 19500591

Assembly members:

Assembly members:
CD147_94-205, polymer, 125 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CD147_94-205: GSHMMGTANIQLHGPPRVKA VKSSEHINEGETAMLVCKSE SVPPVTDWAWYKITDSEDKA LMNGSESRFFVSSSQGRSEL HIENLNMEADPGQYRCNGTS SKGSDQAIITLRVRSHLAAL WPFLG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	194
15N chemical shifts	97
1H chemical shifts	96

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Extracellular CD147 Isoform-3	1

Entities:

Entity 1, Extracellular CD147 Isoform-3 125 residues - Formula weight is not available

1

GLY

SER

HIS

MET

GLY

THR

ALA

ASN

ILE

2

GLN

LEU

HIS

GLY

PRO

ARG

VAL

LYS

ALA

3

VAL

LYS

SER

GLU

HIS

ILE

ASN

GLU

GLY

4

GLU

THR

ALA

MET

LEU

VAL

CYS

LYS

SER

GLU

5

SER

VAL

PRO

VAL

THR

ASP

TRP

ALA

TRP

6

TYR

LYS

ILE

THR

ASP

SER

GLU

ASP

LYS

ALA

7

LEU

MET

ASN

GLY

SER

GLU

SER

ARG

PHE

8

VAL

SER

GLN

GLY

ARG

SER

GLU

LEU

9

HIS

ILE

GLU

ASN

LEU

ASN

MET

GLU

ALA

ASP

10

PRO

GLY

GLN

TYR

ARG

CYS

ASN

GLY

THR

SER

11

SER

LYS

GLY

SER

ASP

GLN

ALA

ILE

THR

12

LEU

ARG

VAL

ARG

SER

HIS

LEU

ALA

LEU

13

TRP

PRO

PHE

LEU

GLY

Samples:

sample_1: sodium phosphate 50 mM; sodium chloride 150 mM; imidazole 50 mM; CD147 94-205, [U-99% 13C; U-99% 15N], 0.5 mM; H2O 93%

sample_conditions_1: ionic strength: 0.232 M; pH: 6.5; pressure: 1 atm; temperature: 298.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1

Software:

VNMRJ, Varian - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

CcpNMR, CCPN - chemical shift assignment

NMR spectrometers:

Varian VNMRS 900 MHz
Varian INOVA 800 MHz
Varian INOVA 800 MHz
Varian INOVA 600 MHz
Varian INOVA 720 MHz

BMRB	16322
PDB	3B5H 4U0Q
DBJ	BAA08109 BAB88938 BAC67167 BAC67168 BAC76828
EMBL	CAA45716 CAH92402
GB	AAA68936 AAA91084 AAB41120 AAC33279 AAD10704
REF	NP_001128860 NP_001719 NP_940991 NP_940992 NP_940993
SP	P35613 Q865R3
AlphaFold	P35613 Q865R3