BMRB Entry 7366

Name: Solution Structure of Putative periplasmic protein: Northest Structural Genomics Target StR106
Published: 2009-10-09

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PDB ID: 2noc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR7366
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Putative periplasmic protein: Northest Structural Genomics Target StR106

Deposition date:

2007-01-19

Original release date:

2009-10-09

Authors:

Zhang, Q.; Liu, G.; Wang, H.; Nwosu, C.; Cunningham, K.; Ma, L.; Xiao, R.; Liu, J.; Baran, M.; Swapna, G.; Thomas, B.; Rost, B.; Montelione, G.; Szypersk, T.

Citation:

Citation: Zhang, Q.; Liu, G.; Wang, H.; Nwosu, C.; Cunningham, K.; Ma, L.; Xiao, R.; Liu, J.; Baran, M.; Swapna, G.; Thomas, B.; Montelione, G.; Szypersk, T.. "Solution Structure of Putative periplasmic protein: Northest Structural Genomics Target StR106" To be Published ., .-..

Assembly members:

Assembly members:
Putative_periplasmic_protein, polymer, 99 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Salmonella choleraesuis Taxonomy ID: 591 Superkingdom: not available Kingdom: Bacteria Genus/species: Salmonella Salmonella

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Putative_periplasmic_protein: MKTGYKVMLGALAFVVTNVY AAEIMKKTDFDKVASEYTKI GTISTTGEMSPLDAREDLIK KADEKGADVVVLTSGQTENK IHGTADIYKKKLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	261
15N chemical shifts	77
1H chemical shifts	536

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Periplasmic protein	1

Entities:

Entity 1, Periplasmic protein 99 residues - Formula weight is not available

1

MET

LYS

THR

GLY

TYR

LYS

VAL

MET

LEU

GLY

2

ALA

LEU

ALA

PHE

VAL

THR

ASN

VAL

TYR

3

ALA

GLU

ILE

MET

LYS

THR

ASP

PHE

4

ASP

LYS

VAL

ALA

SER

GLU

TYR

THR

LYS

ILE

5

GLY

THR

ILE

SER

THR

GLY

GLU

MET

SER

6

PRO

LEU

ASP

ALA

ARG

GLU

ASP

LEU

ILE

LYS

7

LYS

ALA

ASP

GLU

LYS

GLY

ALA

ASP

VAL

8

VAL

LEU

THR

SER

GLY

GLN

THR

GLU

ASN

LYS

9

ILE

HIS

GLY

THR

ALA

ASP

ILE

TYR

LYS

10

LYS

LEU

GLU

HIS

Samples:

sample: Periplasmic protein 1.1 mM; Tris 10 mM; NaCl 100 mM; NaN3 0.02%; D2O 10%; H2O 90%

sample_conditions_1: pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
GFT (4,3)D HNNCABCA	sample	isotropic	sample_conditions_1
GFT (4,3)D CABCA(CO)NHN	sample	isotropic	sample_conditions_1
GFT (4,3)D HABCAB(CO)NHN	sample	isotropic	sample_conditions_1
GFT (4,3)D HCCH	sample	isotropic	sample_conditions_1
SIMULTANEOUS HETERONUCLEAR RESOLVED [1H,1H]-NOESY	sample	isotropic	sample_conditions_1

Software:

DYANA v1.5, Guntert, P. et al. - data analysis

NMRPipe v2.3, Delaglio, F. et al. - processing

CYANA v2.1, Guntert, P. et al. - structure solution

CNS v1.1, Brunger, A.T. et al. - refinement

XEASY v1.3, Bartels, C., Xia, T.H. - data analysis

AutoStruct v2.0.0, Huang, Y.J. - data analysis

UBNMR v1.0, Shen, Y. - data analysis

NMR spectrometers:

Varian INOVA 750 MHz

BMRB	19327
PDB	2MA4 2NOC
DBJ	BAJ35371 BAP06126
EMBL	CAC12674 CAD08821 CAR31935 CAR36277 CAR60410
GB	AAL19320 AAO70086 AAV78241 AAX64313 ABX68592
PIR	AE0547
REF	NP_454961 NP_459361 NP_806226 WP_000848022 WP_000848024