BMRB Entry 7365

Name: Solution structure of Fe65 WW domain
Published: 2009-10-15

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PDB ID: 2e45
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR7365
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of Fe65 WW domain

Deposition date:

2007-01-19

Original release date:

2009-10-15

Authors:

Kouno, T.; Mizuguchi, M.; Nozawa, Y.; Sugaya, T.; Kawano, K.

Citation:

Citation: Kouno, T.; Mizuguchi, M.; Nozawa, Y.; Sugaya, T.; Kawano, K.. "Solution structure of Fe65 WW domain" to be published ., .-..

Assembly members:

Assembly members:
Amyloid_beta_A4_precursor_protein-binding_family_B_member_1, polymer, 55 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Amyloid_beta_A4_precursor_protein-binding_family_B_member_1: GPLGSDSFWNPNAFETDSDL PAGWMRVQDTSGTYYWHIPT GTTQWEPPGRASPSQ

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	131
15N chemical shifts	50
1H chemical shifts	313

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	WW domain	1

Entities:

Entity 1, WW domain 55 residues - Formula weight is not available

1

GLY

PRO

LEU

GLY

SER

ASP

SER

PHE

TRP

ASN

2

PRO

ASN

ALA

PHE

GLU

THR

ASP

SER

ASP

LEU

3

PRO

ALA

GLY

TRP

MET

ARG

VAL

GLN

ASP

THR

4

SER

GLY

THR

TYR

TRP

HIS

ILE

PRO

THR

5

GLY

THR

GLN

TRP

GLU

PRO

GLY

ARG

6

ALA

SER

PRO

SER

GLN

Samples:

sample_1: WW domain, [U-13C; U-15N], 0.65 mM; phosphate buffer 10 mM; D2O 10%; H2O 90%

sample_2: WW domain, [U-13C; U-15N], 0.65 mM; phosphate buffer 10 mM; D2O 100%

sample_conditions_1: pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
HNHA	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_2	isotropic	sample_conditions_1
2D NOESY	sample_2	isotropic	sample_conditions_1

Software:

NMRPipe v2.2, F. Delaglio, et al. - processing

PIPP v4.3.2, D.S. Garret - collection

X-PLOR v3.1f, A.T. Brunger - structure solution

X-PLOR v3.1f, A.T. Brunger - refinement

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2E45 2HO2 2IDH 2OEI
DBJ	BAH11531 BAH11532 BAH11554 BAH11576 BAH11788
EMBL	CAA42998 CAD98057
GB	AAK18816 ABL07489 EPY80480 KFO24725
REF	NP_001240816 NP_001244248 NP_001244249 NP_001244250 NP_001244252