BMRB Entry 7281

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7281

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

NMR STRUCTURE OF PROTEIN YJBR FROM ESCHERICHIA COLI;NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER226

Deposition date:

2006-08-29

Original release date:

2006-10-23

Authors:

SINGARAPU, KIRAN; GAOHUA, LIU; XIAO, RONG; SHETTY, KARISHMA; GAETANO, MONTELIONE; SZYPERSKI, THOMAS

Citation:

Citation: Singarapu, Kiran; Liu, Gaohua; Xiao, Rong; Bertonati, Claudia; Honig, Barry; Montelione, Gaetano; Szyperski, Thomas. "NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif." Proteins 67, 501-504 (2007).
PubMed: 17266124

Assembly members:

Assembly members:
protein yjbR, polymer, 126 residues, Formula weight is not available

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eukaryota Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
protein yjbR: MTISELLQYCMAKPGAEQSV HNDWKATQIKVEDVLFAMVK EVENRPAVSLKTSPELAELL RQQHSDVRPSRHLNKAHWST VYLDGSLPDSQIYYLVDASY QQAVNLLPEEKRKLLVQLLE HHHHHH

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	507
15N chemical shifts	113
1H chemical shifts	845

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	protein yjbR monomer	1

Entities:

Entity 1, protein yjbR monomer 126 residues - Formula weight is not available

1

MET

THR

ILE

SER

GLU

LEU

GLN

TYR

CYS

2

MET

ALA

LYS

PRO

GLY

ALA

GLU

GLN

SER

VAL

3

HIS

ASN

ASP

TRP

LYS

ALA

THR

GLN

ILE

LYS

4

VAL

GLU

ASP

VAL

LEU

PHE

ALA

MET

VAL

LYS

5

GLU

VAL

GLU

ASN

ARG

PRO

ALA

VAL

SER

LEU

6

LYS

THR

SER

PRO

GLU

LEU

ALA

GLU

LEU

7

ARG

GLN

HIS

SER

ASP

VAL

ARG

PRO

SER

8

ARG

HIS

LEU

ASN

LYS

ALA

HIS

TRP

SER

THR

9

VAL

TYR

LEU

ASP

GLY

SER

LEU

PRO

ASP

SER

10

GLN

ILE

TYR

LEU

VAL

ASP

ALA

SER

TYR

11

GLN

ALA

VAL

ASN

LEU

PRO

GLU

12

LYS

ARG

LYS

LEU

VAL

GLN

LEU

GLU

13

HIS

Samples:

sample_1: protein yjbR, [U-13C; U-15N], 1.16 mM; DTT 100 mM; CaCl2 5 mM; NaCl 100 mM; MES 20 mM; NaN3 0.02%; D2O 5%; H2O 95%

conditions_1: pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N_HSQC	sample_1	not available	conditions_1
4,3D, GFT HNNCABCA	sample_1	not available	conditions_1
4,3D, GFT CABCACONNH	sample_1	not available	conditions_1
4,3D, GFT HABCABCONNH	sample_1	not available	conditions_1
15N-13C, 3D NOESY	sample_1	not available	conditions_1
2D 1H13C HSQC	sample_1	not available	conditions_1
4,3D, GFT HCCH COSY	sample_1	not available	conditions_1
3D HNCO	sample_1	not available	conditions_1
3D 1H, 13C aro NOESY	sample_1	not available	conditions_1
3D, HCCH COSY	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

VARIAN UNITY 750 MHz

PDB	2FKI
DBJ	BAB38462 BAE78059 BAG79875 BAI28319 BAI33496
EMBL	CAP78523 CAQ34406 CAQ91581 CAR01037 CAR05706
GB	AAC43151 AAC77027 AAG59255 AAN45569 AAN83473
REF	NP_290690 NP_313066 NP_418481 NP_709862 NP_756899
SP	P0AF50 P0AF51
AlphaFold	P0AF50 P0AF51