BMRB Entry 7269

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7269
MolProbity Validation Chart

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Title:
1H, 13C, 15N sequence-specific backbone and sidechain resonance assignments for dockerin-containing C-terminal region of the NagH hyaluronidase from Clostridium perfringens
Deposition date:
2006-08-18
Original release date:
2007-06-27
Authors:
Chitayat, Seth; Adams, Jarrett; Smith, Steven
Citation:

Citation: Chitayat, Seth; Adams, Jarrett; Smith, Steven. "NMR assignment of backbone and side chain resonances for a dockerin-containing C-terminal fragment of the putative mu-toxin from Clostridium perfringens"  Biomol. NMR Assignments 1, 13-15 (2007).
PubMed: 19636814

Assembly members:

Assembly members:
fiv_doc, polymer, 140 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Clostridium Perfringens   Taxonomy ID: 1502   Superkingdom: Eubacteria   Kingdom: Not applicable   Genus/species: Clostridium Perfringens

Experimental source:

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fiv_doc: MDKTNLGELINQGKSLLDES VEGFNVGEYHKGAKDGLTVE INKAEEVFNKEDATEEEINL AKESLEGAIARFNSLLIEES TGDFNGNGKIDIGDLAMVSK NIGSTTNTSLDLNKDGSIDE YEISFINHRILNLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts519
15N chemical shifts145
1H chemical shifts884

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1fiv_doc1

Entities:

Entity 1, fiv_doc 140 residues - Formula weight is not available

1   METASPLYSTHRASNLEUGLYGLULEUILE
2   ASNGLNGLYLYSSERLEULEUASPGLUSER
3   VALGLUGLYPHEASNVALGLYGLUTYRHIS
4   LYSGLYALALYSASPGLYLEUTHRVALGLU
5   ILEASNLYSALAGLUGLUVALPHEASNLYS
6   GLUASPALATHRGLUGLUGLUILEASNLEU
7   ALALYSGLUSERLEUGLUGLYALAILEALA
8   ARGPHEASNSERLEULEUILEGLUGLUSER
9   THRGLYASPPHEASNGLYASNGLYLYSILE
10   ASPILEGLYASPLEUALAMETVALSERLYS
11   ASNILEGLYSERTHRTHRASNTHRSERLEU
12   ASPLEUASNLYSASPGLYSERILEASPGLU
13   TYRGLUILESERPHEILEASNHISARGILE
14   LEUASNLEUGLUHISHISHISHISHISHIS

Samples:

sample_1: fiv_doc, [U-13C; U-15N], 1 mM

conditions_1: pH: 6.5; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
1H-15N HSQCnot availablenot availablenot available
3D HNCACBnot availablenot availablenot available
3D CBCACONHnot availablenot availablenot available
3D HCCH-TOCSYnot availablenot availablenot available
3D HC(CO)NHnot availablenot availablenot available
3D C(CO)NHnot availablenot availablenot available
3D aliphatic C13-NOESY-HSQCnot availablenot availablenot available
3D N15-NOESY-HSQCnot availablenot availablenot available
3D HNCOnot availablenot availablenot available
3D HNHAnot availablenot availablenot available

Software:

No software information available

NMR spectrometers:

  • Varian Inova 600 MHz
  • Varian Inova 800 MHz

Related Database Links:

PDB
DBJ BAB79897
GB EDT15476 EDT27353 EDT72384 EDT78133 EIA18629
REF NP_561107 WP_003462807 WP_003467755 WP_003472004 WP_003474156
SP P26831
AlphaFold P26831

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks