BMRB Entry 7268

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PDB ID: 2v37
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7268
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N Chemical Shift Assignments for the N-terminal Extracellular Domain of Truncated Cadherin

Deposition date:

2006-08-18

Original release date:

2007-01-09

Authors:

Bang, Eunjung; Haussinger, Daniel; Stetefeld, Joerg; Ahrens, Thomas; Dames, Sonja; Grzesiek, Stephan

Citation:

Citation: Bang, Eunjung; Haussinger, Daniel; Stetefeld, Joerg; Ahrens, Thomas; Grzesiek, Stephan; Dames, Sonja. "1H, 13C, and 15N chemical shift assignments for the N-terminal extracellular domain of T-cadherin" J. Biomol. NMR 38, 179-179 (2007).
PubMed: 17180550

Assembly members:

Assembly members:
N-terminal extracellular domain of truncated cadherin, polymer, 105 residues, 11741 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
N-terminal extracellular domain of truncated cadherin: SIVVSPILIPENQRQPFPRD VGKVVDSDRPERSKFRLTGK GVDQEPKGIFRINENTGSVS VTRTLDREVIAVYQLFVETT DVNGKTLEGPVPLEVIVIDQ NDNRP

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	450
15N chemical shifts	101
1H chemical shifts	718

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TCAD1 monomer	1

Entities:

Entity 1, TCAD1 monomer 105 residues - 11741 Da.

1

SER

ILE

VAL

SER

PRO

ILE

LEU

ILE

PRO

2

GLU

ASN

GLN

ARG

GLN

PRO

PHE

PRO

ARG

ASP

3

VAL

GLY

LYS

VAL

ASP

SER

ASP

ARG

PRO

4

GLU

ARG

SER

LYS

PHE

ARG

LEU

THR

GLY

LYS

5

GLY

VAL

ASP

GLN

GLU

PRO

LYS

GLY

ILE

PHE

6

ARG

ILE

ASN

GLU

ASN

THR

GLY

SER

VAL

SER

7

VAL

THR

ARG

THR

LEU

ASP

ARG

GLU

VAL

ILE

8

ALA

VAL

TYR

GLN

LEU

PHE

VAL

GLU

THR

9

ASP

VAL

ASN

GLY

LYS

THR

LEU

GLU

GLY

PRO

10

VAL

PRO

LEU

GLU

VAL

ILE

VAL

ILE

ASP

GLN

11

ASN

ASP

ASN

ARG

PRO

Samples:

sample_1: N-terminal extracellular domain of truncated cadherin, [U-98% 13C; U-99% 15N], 0.6 mM; TRIS 5.0 mM; NaCl 10.0 mM; EDTA 1.0 mM; TCEP 1.0 mM

conditions_1: pH: 7.8; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D HNCA	not available	not available	not available
3D HNCO	not available	not available	not available
3D CBCA(CO)NH	not available	not available	not available
3D HBHA(CBCACO)NH	not available	not available	not available
3D CCONH-TOCSY	not available	not available	not available
3D HCCH-TOCSY	not available	not available	not available
3D HNHA	not available	not available	not available
3D 15N NOESY	not available	not available	not available
3D 13C NOESY	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Bruker DRX 600 MHz
Bruker DRX 800 MHz

PDB	2V37
DBJ	BAA32411 BAG10735 BAH12826 BAH14247
EMBL	CAH92850
GB	AAA35624 AAB18911 AAB18912 AAH28624 AAH30653
REF	NP_001103282 NP_001126665 NP_001207417 NP_001207418 NP_001248
SP	P55290 Q5R5W6
AlphaFold	P55290 Q5R5W6