BMRB Entry 7256

Click here to enlarge.

PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7256
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415
Deposition date:
2006-08-10
Original release date:
2007-01-23
Authors:
Singarapu, K.; Liu, G.; Eletsky, A.; Parish, D.; Atreya, H.; Xu, D.; Janjua, H.; Cunningham, K.; Ma, L.; Xiao, .; Liu, J.; Baran, M.; Swapna, G.; Acton, T.; Rost, B.; Montelione, G.; Szyperski, T.
Citation:

Citation: Singarapu, K.; Liu, G.; Eletsky, A.; Parish, D.; Atreya, H.; Xu, D.; Janjua, H.; Cunningham, K.; Ma, L.; Xiao, R.; Liu, J.; Baran, M.; Swapna, G.; Acton, T.; Montelione, G.; Szyperski, T.. "NMR structure of protein Hydrogenase-1 operon protein hyaE from Escherichia coli: Northeast Structural Genomics Consortium Target ER415"  .

Assembly members:

Assembly members:
Hydrogenase-1 operon protein hyaE, polymer, 140 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: E. coli   Taxonomy ID: 562   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Hydrogenase-1 operon protein hyaE: MSNDTPFDALWQRMLARGWT PVSESRLDDWLTQAPDGVVL LSSDPKRTPEVSDNPVMIGE LLREFPDYTWQVAIADLEQS EAIGDRFGVFRFPATLVFTG GNYRGVLNGIHPWAELINLM RGLVEPQQERASLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts544
15N chemical shifts119
1H chemical shifts891

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Hydrogenase-1 operon protein hyaE1

Entities:

Entity 1, Hydrogenase-1 operon protein hyaE 140 residues - Formula weight is not available

1   METSERASNASPTHRPROPHEASPALALEU
2   TRPGLNARGMETLEUALAARGGLYTRPTHR
3   PROVALSERGLUSERARGLEUASPASPTRP
4   LEUTHRGLNALAPROASPGLYVALVALLEU
5   LEUSERSERASPPROLYSARGTHRPROGLU
6   VALSERASPASNPROVALMETILEGLYGLU
7   LEULEUARGGLUPHEPROASPTYRTHRTRP
8   GLNVALALAILEALAASPLEUGLUGLNSER
9   GLUALAILEGLYASPARGPHEGLYVALPHE
10   ARGPHEPROALATHRLEUVALPHETHRGLY
11   GLYASNTYRARGGLYVALLEUASNGLYILE
12   HISPROTRPALAGLULEUILEASNLEUMET
13   ARGGLYLEUVALGLUPROGLNGLNGLUARG
14   ALASERLEUGLUHISHISHISHISHISHIS

Samples:

sample_1: Hydrogenase-1 operon protein hyaE, [U-13C; U-15N], 0.6 mM; NaN3 0.02%; DTT 100 mM; CaCl2 5 mM; NaCl 100 mM; MES 20 mM; H2O 95%; D2O 5%

sample_cond_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D HNCACBnot availablenot availablenot available
3D CBCACONHnot availablenot availablenot available
3D HBHACONHnot availablenot availablenot available
3D HCCH COSYnot availablenot availablenot available
3D 13C-separated NOESYnot availablenot availablenot available
3D 15N-separated NOESYnot availablenot availablenot available
3D aro NOESYnot availablenot availablenot available

Software:

NMRPipe v2004.061.12.44 - processing

DYANA v1.5 - data analysis

CYANA v2.1 - data analysis, refinement

AutoStruct v2.0.0 - data analysis

AutoStruct v2.0.0 - data analysis

CNS v1.1 - refinement

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
DBJ BAA35741 BAB34555 BAG76562 BAI24832 BAI29868
EMBL CAP75438 CAQ31503 CAQ88643 CAQ97881 CAR02329
GB AAA24001 AAC74061 AAG55524 AAN42605 AAN79585
REF NP_286913 NP_309159 NP_415495 NP_706898 NP_753042
SP P19931
AlphaFold P19931

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks