BMRB Entry 7229

Name: Solution structure of Brak/CXCL14
Published: 2007-01-04

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PDB ID: 2hdl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7229
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of Brak/CXCL14

Deposition date:

2006-07-14

Original release date:

2007-01-04

Authors:

Volkman, B.; Peterson, F.; Schwarze, S.; Harder, A.

Citation:

Citation: Peterson, F.; Thorpe, J.; Harder, A.; Volkman, B.; Schwarze, S.. "Structural Determinants Involved in the Regulation of CXCL14/BRAK Expression by the 26 S Proteasome" J. Mol. Biol. 363, 813-822 (2006).
PubMed: 16987528

Assembly members:

Assembly members:
Small inducible cytokine B14, polymer, 78 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Small inducible cytokine B14: GSKCKCSRKGPKIRYSDVKK LEMKPKYPHCEEKMVIITTK SVSRYRGQEHCLHPKLQSTK RFIKWYNAWNEKRRVYEE

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	325
15N chemical shifts	71
1H chemical shifts	518

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Small inducible cytokine B14	1

Entities:

Entity 1, Small inducible cytokine B14 78 residues - Formula weight is not available

1

GLY

SER

LYS

CYS

LYS

CYS

SER

ARG

LYS

GLY

2

PRO

LYS

ILE

ARG

TYR

SER

ASP

VAL

LYS

3

LEU

GLU

MET

LYS

PRO

LYS

TYR

PRO

HIS

CYS

4

GLU

LYS

MET

VAL

ILE

THR

LYS

5

SER

VAL

SER

ARG

TYR

ARG

GLY

GLN

GLU

HIS

6

CYS

LEU

HIS

PRO

LYS

LEU

GLN

SER

THR

LYS

7

ARG

PHE

ILE

LYS

TRP

TYR

ASN

ALA

TRP

ASN

8

GLU

LYS

ARG

VAL

TYR

GLU

Samples:

sample_1: Small inducible cytokine B14, [U-15N; U-13C], 1 mM; phosphate buffer 100 mM; NaCl 150 mM; H2O 95%; D2O 5%

sample_cond_1: ionic strength: 300 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
3D 13C-separated NOESY (AROMATIC)	not available	not available	not available

Software:

xwinnmr v3.5 - collection

NMRPipe v2004 - processing

SPSCAN v1.1.0 - data analysis

XEASY v1.3 - data analysis

GARANT v2.1 - data analysis

CYANA v2.1 - structure solution

X-PLOR NIH v2.9.3 - refinement

NMR spectrometers:

Bruker DRX 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks