BMRB Entry 7220

Name: ephrinB2 ectodomain
Published: 2006-11-06

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PDB ID: 2i85
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7220
MolProbity Validation Chart

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3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

ephrinB2 ectodomain

Deposition date:

2006-07-10

Original release date:

2006-11-06

Authors:

Ran, Xiaoyuan; Fan, Jingsong; Song, Jianxing

Citation:

Citation: Ran, Xiaoyuan; Fan, Jing-song; Song, Jianxing. "NMR assignment of Human ephrinB2 ectodomain" J. Biomol. NMR 38, 171-171 (2007).
PubMed: 17061024

Assembly members:

Assembly members:
ephrinB2 ectodomain, polymer, 151 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo Sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ephrinB2 ectodomain: SKSIVLEPIYWNSSNSKFLP GQGLVLYPQIGDKLDIICPK VDSKTVGQYEYYKVYMVDKD QADRCTIKKENTPLLNCAKP DQDIKFTIKFQEFSPNLWGL EFQKNKDYYIISTSNGSLEG LDNQEGGVCQTRAMKILMKV GQDASSAGSTR

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	561
15N chemical shifts	154
1H chemical shifts	800

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ephrinB2 ectodomain monomer	1

Entities:

Entity 1, ephrinB2 ectodomain monomer 151 residues - Formula weight is not available

1

SER

LYS

SER

ILE

VAL

LEU

GLU

PRO

ILE

TYR

2

TRP

ASN

SER

ASN

SER

LYS

PHE

LEU

PRO

3

GLY

GLN

GLY

LEU

VAL

LEU

TYR

PRO

GLN

ILE

4

GLY

ASP

LYS

LEU

ASP

ILE

CYS

PRO

LYS

5

VAL

ASP

SER

LYS

THR

VAL

GLY

GLN

TYR

GLU

6

TYR

LYS

VAL

TYR

MET

VAL

ASP

LYS

ASP

7

GLN

ALA

ASP

ARG

CYS

THR

ILE

LYS

GLU

8

ASN

THR

PRO

LEU

ASN

CYS

ALA

LYS

PRO

9

ASP

GLN

ASP

ILE

LYS

PHE

THR

ILE

LYS

PHE

10

GLN

GLU

PHE

SER

PRO

ASN

LEU

TRP

GLY

LEU

11

GLU

PHE

GLN

LYS

ASN

LYS

ASP

TYR

ILE

12

ILE

SER

THR

SER

ASN

GLY

SER

LEU

GLU

GLY

13

LEU

ASP

ASN

GLN

GLU

GLY

VAL

CYS

GLN

14

THR

ARG

ALA

MET

LYS

ILE

LEU

MET

LYS

VAL

15

GLY

GLN

ASP

ALA

SER

ALA

GLY

SER

THR

16

ARG

Samples:

sample_1: ephrinB2 ectodomain, [U-13C; U-15N], 0.5 mM; phosphate buffer 20 mM

conditions_1: pH: 6.8; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N_HSQC	sample_1	not available	conditions_1
HSQC-TOCSY	sample_1	not available	conditions_1
HNCACB	sample_1	not available	conditions_1
CBCA(CO)NH	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
HCCH-TOCSY	sample_1	not available	conditions_1
(H)CC(CO)NH	sample_1	not available	conditions_1
H(CCO)NH	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker Avance 800 MHz

PDB	1IKO 1KGY 2HLE 2I85 2VSK 2VSM 2WO2 3GXU
DBJ	BAE21211 BAE21388 BAE22016 BAE24974 BAE25008
EMBL	CAJ18588
GB	AAA82934 AAA99707 AAA99708 AAC41752 AAC42052
PRF	2108400A 2108400B
REF	NP_001100798 NP_001107758 NP_004084 NP_034241 XP_001134800
SP	P52799 P52800
TPG	DAA23728
AlphaFold	P52799 P52800