BMRB Entry 7178

Name: Solution NMR structure of Q8ZP25 from Salmonella typhimurium LT2.
Published: 2008-01-14

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PDB ID: 2gzp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR7178
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR structure of Q8ZP25 from Salmonella typhimurium LT2.

Deposition date:

2006-06-21

Original release date:

2008-01-14

Authors:

Parish, D.; Liu, G.; Shen, Y.; Ho, C.; Cunningham, K.; Xiao, R.; Swapna, G.; Acton, T.; Montelione, G.; Szyperski, T.

Citation:

Citation: Parish, D.; Liu, G.; Shen, Y.; Ho, C.; Cunningham, K.; Xiao, R.; Swapna, G.; Acton, T.; Montelione, G.; Szyperski, T.. "Solution NMR structure of Q8ZP25 from Salmonella typhimurium LT2." .

Assembly members:

Assembly members:
putative chaperone, polymer, 142 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Salmonella typhimurium Taxonomy ID: 602 Superkingdom: Bacteria Kingdom: not available Genus/species: Salmonella typhimurium

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
putative chaperone: MANDTPFSALWQRLLTRGWQ PVEASTVDDWIKRVGDGVIL LSSDPRRTPEVSDNPVMIAE LLREFPQFDWQVAVADLEQS EAIGDRFNVRRFPATLVFTD GKLRGALSGIHPWAELLTLM RSIVDTPAAQETVQLEHHHH HH

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	356
15N chemical shifts	100
1H chemical shifts	728

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	putative chaperone	1

Entities:

Entity 1, putative chaperone 142 residues - Formula weight is not available

1

MET

ALA

ASN

ASP

THR

PRO

PHE

SER

ALA

LEU

2

TRP

GLN

ARG

LEU

THR

ARG

GLY

TRP

GLN

3

PRO

VAL

GLU

ALA

SER

THR

VAL

ASP

TRP

4

ILE

LYS

ARG

VAL

GLY

ASP

GLY

VAL

ILE

LEU

5

LEU

SER

ASP

PRO

ARG

THR

PRO

GLU

6

VAL

SER

ASP

ASN

PRO

VAL

MET

ILE

ALA

GLU

7

LEU

ARG

GLU

PHE

PRO

GLN

PHE

ASP

TRP

8

GLN

VAL

ALA

VAL

ALA

ASP

LEU

GLU

GLN

SER

9

GLU

ALA

ILE

GLY

ASP

ARG

PHE

ASN

VAL

ARG

10

ARG

PHE

PRO

ALA

THR

LEU

VAL

PHE

THR

ASP

11

GLY

LYS

LEU

ARG

GLY

ALA

LEU

SER

GLY

ILE

12

HIS

PRO

TRP

ALA

GLU

LEU

THR

LEU

MET

13

ARG

SER

ILE

VAL

ASP

THR

PRO

ALA

GLN

14

GLU

THR

VAL

GLN

LEU

GLU

HIS

15

HIS

Samples:

sample_1: putative chaperone, [U-13C; U-15N], 1 mM; H20 95%; D20 5%

sample_2: putative chaperone, [U-5% 13C; U-15N], 1 mM; H20 95%; D20 5%

sample_cond_1: pH: 6.5; pressure: 1 atm; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
Brunger, Adams, Clore, DeLano, Gros, Grosse-Kunstleve, Jiang, Kuszewski, Nilges, Pannu, Read, Rice, Simonson, Warren.	not available	not available	sample_cond_1
Guntert	not available	not available	sample_cond_1
Varian	not available	not available	sample_cond_1
Delaglio, Bax	not available	not available	sample_cond_1
Glaser	not available	not available	sample_cond_1
Huang, Tejero, Power, Montelione	not available	not available	sample_cond_1
Zimmerman, Moseley, Kiriyeva, Kulikowski, Montelione	not available	not available	sample_cond_1

Software:

CNS v1.1 - refinement

DYANA v1.5 - structure solution

CYANA v1.05 - structure solution

CYANA v2.1 - structure solution

VNMR v6.1c - collection

NMRPipe v2.3 - processing

XEASY v1.3.1.3 - data analysis

AutoStruct v2.0.0 - data analysis

AutoAssign - data analysis

NMR spectrometers:

Varian INOVA 600 MHz

PDB	2ES7 2GZP 2JZT
DBJ	BAJ36754 BAP07655
EMBL	CAD05474 CAR32826 CAR37202 CBG24793 CBW17813
GB	AAL20705 AAO68750 ABX66837 ACF61159 ACF68193
PIR	AH0721
REF	NP_456299 NP_460746 NP_804901 WP_000245855 WP_001262570