BMRB Entry 7165

Name: Backbone 1H, 13C, and 15N Chemical Shift Assignments for Saccharomyces cerevisiae Urm1
Published: 2006-08-11

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7165

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Backbone 1H, 13C, and 15N Chemical Shift Assignments for Saccharomyces cerevisiae Urm1

Deposition date:

2006-06-10

Original release date:

2006-08-11

Authors:

Xu, Junjie; Zhang, Jiahai; Huang, Hongda; Wu, Jihui; Shi, Yunyu

Citation:

Citation: Xu, Junjie; Zhang, Jiahai; Wang, Li; Zhou, Jie; Huang, Hongda; Wu, Jihui; Zhong, Yang; Shi, Yunyu. "Solution structure of Urm1 and its implications for the origin of protein modifiers" Proc. Natl. Acad. Sci. U.S.A. 103, 11625-11630 (2006).
PubMed: 16864801

Assembly members:

Assembly members:
Urm1, polymer, 107 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Urm1: MVNVKVEFLGGLDAIFGKQR VHKIKMDKEDPVTVGDLIDH IVSTMINNPNDVSIFIEDDS IRPGIITLINDTDWELEGEK DYILEDGDIISFTSTLHGGL EHHHHHH

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	390
15N chemical shifts	102
1H chemical shifts	688

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Urm1	1

Entities:

Entity 1, Urm1 107 residues - Formula weight is not available

1

MET

VAL

ASN

VAL

LYS

VAL

GLU

PHE

LEU

GLY

2

GLY

LEU

ASP

ALA

ILE

PHE

GLY

LYS

GLN

ARG

3

VAL

HIS

LYS

ILE

LYS

MET

ASP

LYS

GLU

ASP

4

PRO

VAL

THR

VAL

GLY

ASP

LEU

ILE

ASP

HIS

5

ILE

VAL

SER

THR

MET

ILE

ASN

PRO

ASN

6

ASP

VAL

SER

ILE

PHE

ILE

GLU

ASP

SER

7

ILE

ARG

PRO

GLY

ILE

THR

LEU

ILE

ASN

8

ASP

THR

ASP

TRP

GLU

LEU

GLU

GLY

GLU

LYS

9

ASP

TYR

ILE

LEU

GLU

ASP

GLY

ASP

ILE

10

SER

PHE

THR

SER

THR

LEU

HIS

GLY

LEU

11

GLU

HIS

Samples:

sample_1: Urm1, [U-15N], 0.8 mM; phosphate buffer 50 mM; NaCl 50 mM; D2O 10%

sample_2: Urm1, [U-13C; U-15N], 0.8 mM; phosphate buffer 50 mM; NaCl 50 mM; D2O 10%

sample_3: Urm1, [U-13C; U-15N], 0.8 mM; phosphate buffer 50 mM; NaCl 50 mM; D2O 99.96%

conditions_1: pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N_HSQC	sample_1	not available	conditions_1
CBCACONH	sample_2	not available	conditions_1
CBCANH	sample_2	not available	conditions_1
HNCO	sample_2	not available	conditions_1
HN(CA)CO	sample_2	not available	conditions_1
C(CO)NH-TOCSY	sample_2	not available	conditions_1
H(CCO)NH-TOCSY	sample_2	not available	conditions_1
15N TOCSY	sample_2	not available	conditions_1
HBHA(CBCACO)NH	sample_2	not available	conditions_1
15N NOESY	sample_2	not available	conditions_1
13C NOESY	sample_2	not available	conditions_1
HCCH-TOCSY	sample_3	not available	conditions_1
HCCH-COSY	sample_3	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DMX 600 MHz

PDB	2AX5 2PKO 2QJL
DBJ	GAA24107
EMBL	CAA86243 CAY80504
GB	AAS56621 AHY75989 EDN61485 EDV09498 EEU09048
REF	NP_012258
SP	A6ZVR0 B3LTL7 P40554
TPG	DAA08538
AlphaFold	A6ZVR0 B3LTL7 P40554