BMRB Entry 7095

Name: Solution structure of BC059385 from Homo sapiens
Published: 2008-07-15

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PDB ID: 2gow
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR7095
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of BC059385 from Homo sapiens

Deposition date:

2006-05-05

Original release date:

2008-07-15

Authors:

Volkman, B.; de la Cruz, N.; Lytle, B.; Peterson, F.

Citation:

Citation: de la Cruz, N.; Peterson, F.; Lytle, B.; Volkman, B.. "Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens." Protein Sci. 16, 1479-1484 (2007).
PubMed: 17567738

Assembly members:

Assembly members:
Ubiquitin-like protein 3, polymer, 125 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ubiquitin-like protein 3: GHHHHHHLESSNVPADMINL RLILVSGKTKEFLFSPNDSA SDIAKHVYDNWPMDWEEEQV SSPNILRLIYQGRFLHGNVT LGALKLPFGKTTVMHLVARE TLPEPNSQGQRNREKTGESN CCVIL

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	406
15N chemical shifts	91
1H chemical shifts	664

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ubiquitin-like protein 3	1

Entities:

Entity 1, Ubiquitin-like protein 3 125 residues - Formula weight is not available

1

GLY

HIS

LEU

GLU

SER

2

SER

ASN

VAL

PRO

ALA

ASP

MET

ILE

ASN

LEU

3

ARG

LEU

ILE

LEU

VAL

SER

GLY

LYS

THR

LYS

4

GLU

PHE

LEU

PHE

SER

PRO

ASN

ASP

SER

ALA

5

SER

ASP

ILE

ALA

LYS

HIS

VAL

TYR

ASP

ASN

6

TRP

PRO

MET

ASP

TRP

GLU

GLN

VAL

7

SER

PRO

ASN

ILE

LEU

ARG

LEU

ILE

TYR

8

GLN

GLY

ARG

PHE

LEU

HIS

GLY

ASN

VAL

THR

9

LEU

GLY

ALA

LEU

LYS

LEU

PRO

PHE

GLY

LYS

10

THR

VAL

MET

HIS

LEU

VAL

ALA

ARG

GLU

11

THR

LEU

PRO

GLU

PRO

ASN

SER

GLN

GLY

GLN

12

ARG

ASN

ARG

GLU

LYS

THR

GLY

GLU

SER

ASN

13

CYS

VAL

ILE

LEU

Samples:

sample_1: Ubiquitin-like protein 3, [U-15N; U-13C], 0.5 mM; deuterated sodium acetate 10 mM; NaCl 100 mM; Dithiothreitol 2 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 106 mM; pH: 5.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
3D 13C-separated NOESY (AROMATIC)	not available	not available	not available

Software:

xwinnmr v3.5 - collection

NMRPipe v2004 - processing

XEASY v1.3 - data analysis

SPSCAN v1.1.0 - data analysis

GARANT v2.1 - data analysis

CYANA v2.1 - structural calculation

X-PLOR NIH v2.9.3 - refinement

NMR spectrometers:

Bruker DRX 600 MHz

PDB	2GOW
DBJ	BAE22201 BAE26780 BAG34788 BAG51754
EMBL	CAB45762 CAG32280 CAG38489 CAL38126 CAL38242
GB	AAD02323 AAD02324 AAD02325 AAH24507 AAH25595
REF	NP_001012847 NP_001015030 NP_001033233 NP_001244722 NP_009037
SP	O95164 Q2TA46 Q5BJT2 Q9Z2M6
TPG	DAA23938
AlphaFold	O95164 Q2TA46 Q5BJT2 Q9Z2M6