BMRB Entry 7079

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PDB ID: 2gqb
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7079
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sequence specific assignment of a hypothetical protein RP2812 (NESG ID: RPT4) from Rhodopseudomonas palustris

Deposition date:

2006-04-20

Original release date:

2006-11-06

Authors:

Srisailam, Sampath; Lukin, Jonathan; Yee, Adelinda; Lemak, Alexander; Arrowsmith, Cheryl

Citation:

Citation: Srisailam, Sampath; Lukin, Jonathan; Yee, Adelinda; Lemak, Alexander; Arrowsmith, Cheryl. "Sequence specific assignment of a hypothetical protein RP2812 (NESG ID: RPT4) from Rhodopseudomonas palustris" J. Biomol. NMR ., .-..

Assembly members:

Assembly members:
conserved unknown protein RPA2825 from Rhodopseudomonas palustris, polymer, 130 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Rhodopseudomonas palustris Taxonomy ID: 1076 Superkingdom: Eubacteria Kingdom: not available Genus/species: Rhodopseudomonas palustris

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
conserved unknown protein RPA2825 from Rhodopseudomonas palustris: MSIFGKIMSAIFGDSAAASP GGAQAPATTGAAGTAPTAPQ PTAAPSIDVAPILDKAVKAK GEKLEWRTSIVDLMKALDID SSLSARKELAKELGYSGDMN DSASMNIWLHKQVMSKLVAN GGKLPPEIKH

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	497
15N chemical shifts	124
1H chemical shifts	835

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RP2812	1

Entities:

Entity 1, RP2812 130 residues - Formula weight is not available

1	MET	SER	ILE	PHE	GLY	LYS	ILE	MET	SER	ALA
2	ILE	PHE	GLY	ASP	SER	ALA	ALA	ALA	SER	PRO
3	GLY	GLY	ALA	GLN	ALA	PRO	ALA	THR	THR	GLY
4	ALA	ALA	GLY	THR	ALA	PRO	THR	ALA	PRO	GLN
5	PRO	THR	ALA	ALA	PRO	SER	ILE	ASP	VAL	ALA
6	PRO	ILE	LEU	ASP	LYS	ALA	VAL	LYS	ALA	LYS
7	GLY	GLU	LYS	LEU	GLU	TRP	ARG	THR	SER	ILE
8	VAL	ASP	LEU	MET	LYS	ALA	LEU	ASP	ILE	ASP
9	SER	SER	LEU	SER	ALA	ARG	LYS	GLU	LEU	ALA
10	LYS	GLU	LEU	GLY	TYR	SER	GLY	ASP	MET	ASN
11	ASP	SER	ALA	SER	MET	ASN	ILE	TRP	LEU	HIS
12	LYS	GLN	VAL	MET	SER	LYS	LEU	VAL	ALA	ASN
13	GLY	GLY	LYS	LEU	PRO	PRO	GLU	ILE	LYS	HIS

Samples:

sample_1: conserved unknown protein RPA2825 from Rhodopseudomonas palustris, [U-15N; U-13C], 1 ± 0.2 mM; MOPS 10 ± 0.05 mM; Sodium Chloride 450 ± 0.05 mM

conditions_1: pH: 6.5; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
1H13C HSQC	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
HNCA	sample_1	not available	conditions_1
CCTOCSY NH	sample_1	not available	conditions_1
HCCTOCSY NH	sample_1	not available	conditions_1
HC(C)H-TOCSY	sample_1	not available	conditions_1
HCC(H)-TOCSY	sample_1	not available	conditions_1
15N-NOESY	sample_1	not available	conditions_1
13C-NOESY	sample_1	not available	conditions_1

Software:

SPARKY v3.95 -

NMR spectrometers:

Bruker Avance 600 MHz

PDB	2GQB
EMBL	CAE28267
GB	ACF01669
REF	NP_948168 WP_011158376 YP_001992144

1	MET	SER	ILE	PHE	GLY	LYS	ILE	MET	SER	ALA
2	ILE	PHE	GLY	ASP	SER	ALA	ALA	ALA	SER	PRO
3	GLY	GLY	ALA	GLN	ALA	PRO	ALA	THR	THR	GLY
4	ALA	ALA	GLY	THR	ALA	PRO	THR	ALA	PRO	GLN
5	PRO	THR	ALA	ALA	PRO	SER	ILE	ASP	VAL	ALA
6	PRO	ILE	LEU	ASP	LYS	ALA	VAL	LYS	ALA	LYS
7	GLY	GLU	LYS	LEU	GLU	TRP	ARG	THR	SER	ILE
8	VAL	ASP	LEU	MET	LYS	ALA	LEU	ASP	ILE	ASP
9	SER	SER	LEU	SER	ALA	ARG	LYS	GLU	LEU	ALA
10	LYS	GLU	LEU	GLY	TYR	SER	GLY	ASP	MET	ASN
11	ASP	SER	ALA	SER	MET	ASN	ILE	TRP	LEU	HIS
12	LYS	GLN	VAL	MET	SER	LYS	LEU	VAL	ALA	ASN
13	GLY	GLY	LYS	LEU	PRO	PRO	GLU	ILE	LYS	HIS

1	MET	SER	ILE	PHE	GLY	LYS	ILE	MET	SER	ALA
2	ILE	PHE	GLY	ASP	SER	ALA	ALA	ALA	SER	PRO
3	GLY	GLY	ALA	GLN	ALA	PRO	ALA	THR	THR	GLY
4	ALA	ALA	GLY	THR	ALA	PRO	THR	ALA	PRO	GLN
5	PRO	THR	ALA	ALA	PRO	SER	ILE	ASP	VAL	ALA
6	PRO	ILE	LEU	ASP	LYS	ALA	VAL	LYS	ALA	LYS
7	GLY	GLU	LYS	LEU	GLU	TRP	ARG	THR	SER	ILE
8	VAL	ASP	LEU	MET	LYS	ALA	LEU	ASP	ILE	ASP
9	SER	SER	LEU	SER	ALA	ARG	LYS	GLU	LEU	ALA
10	LYS	GLU	LEU	GLY	TYR	SER	GLY	ASP	MET	ASN
11	ASP	SER	ALA	SER	MET	ASN	ILE	TRP	LEU	HIS
12	LYS	GLN	VAL	MET	SER	LYS	LEU	VAL	ALA	ASN
13	GLY	GLY	LYS	LEU	PRO	PRO	GLU	ILE	LYS	HIS