BMRB Entry 7064

Name: Cycloviolacin O14
Published: 2008-07-07

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PDB ID: 2gj0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR7064
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Cycloviolacin O14

Deposition date:

2006-04-10

Original release date:

2008-07-07

Authors:

Ireland, D.; Colgrave, M.; Craik, D.

Citation:

Citation: Ireland, D.; Colgrave, M.; Craik, D.. "A novel suite of cyclotides from Viola odorata: sequence variation and the implications for structure, function and stability" Biochem. J. 400, 1-12 (2006).
PubMed: 16872274

Assembly members:

Assembly members:
Cycloviolacin O14, polymer, 31 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Sweet violet Taxonomy ID: 97441 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Viola odorata

Experimental source:

Experimental source: Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Cycloviolacin O14: GSIPACGESCFKGKCYTPGC SCSKYPLCAKN

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	181

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cycloviolacin O14	1

Entities:

Entity 1, Cycloviolacin O14 31 residues - Formula weight is not available

1

GLY

SER

ILE

PRO

ALA

CYS

GLY

GLU

SER

CYS

2

PHE

LYS

GLY

LYS

CYS

TYR

THR

PRO

GLY

CYS

3

SER

CYS

SER

LYS

TYR

PRO

LEU

CYS

ALA

LYS

4

ASN

Samples:

sample_1: Cycloviolacin O14 1.5 mM; H2O 90%; D2O 10%

sample_2: Cycloviolacin O14 1.5 mM; D2O 100%

sample_cond_1: ionic strength: 1 mM; pH: 3.5; pressure: 1 atm; temperature: 290 K

sample_cond_2: ionic strength: 1 mM; pH: 3.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D TOCSY	not available	not available	not available
2D NOESY	not available	not available	not available
DQF-COSY	not available	not available	not available
E-COSY	not available	not available	not available
HSQC	not available	not available	not available

Software:

DIANA v1.5 - refinement

CNS v1.1 - refinement

SPARKY v3.110 - processing

NMR spectrometers:

Bruker ARX 600 MHz