BMRB Entry 7007

Name: Solution structure of At5g39720.1 from Arabidopsis thaliana
Published: 2006-03-10

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PDB ID: 2g0q
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR7007
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of At5g39720.1 from Arabidopsis thaliana

Deposition date:

2006-02-28

Original release date:

2006-03-10

Authors:

Volkman, B.; Peterson, F.; Lytle, B.

Citation:

Citation: Lytle, B.; Peterson, F.; Tyler, E.; Newman, C.; Vinarov, D.; Markley, J.; Volkman, B.. "Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family" Acta Crystallograph Sect. F Struct. Biol. Cryst. Commun. 62, 490-493 (2006).
PubMed: 16754964

Assembly members:

Assembly members:
AT5G39720, polymer, 173 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: cell free synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AT5G39720: GHHHHHHLECSSDSLQLHNV FVYGSFQDPDVINVMLDRTP EIVSATLPGFQRFRLKGRLY PCIVPSEKGEVHGKVLMGVT SDELENLDAVEGNEYERVTV GIVREDNSEKMAVKTYMWIN KADPDMFGEWNFEEWKRLHK KKFIETFKKIMECKKKPQGQ GNDDISHVLREDQ

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	660
15N chemical shifts	162
1H chemical shifts	1002

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AT5G39720.1 protein	1

Entities:

Entity 1, AT5G39720.1 protein 173 residues - Formula weight is not available

1

GLY

HIS

LEU

GLU

CYS

2

SER

ASP

SER

LEU

GLN

LEU

HIS

ASN

VAL

3

PHE

VAL

TYR

GLY

SER

PHE

GLN

ASP

PRO

ASP

4

VAL

ILE

ASN

VAL

MET

LEU

ASP

ARG

THR

PRO

5

GLU

ILE

VAL

SER

ALA

THR

LEU

PRO

GLY

PHE

6

GLN

ARG

PHE

ARG

LEU

LYS

GLY

ARG

LEU

TYR

7

PRO

CYS

ILE

VAL

PRO

SER

GLU

LYS

GLY

GLU

8

VAL

HIS

GLY

LYS

VAL

LEU

MET

GLY

VAL

THR

9

SER

ASP

GLU

LEU

GLU

ASN

LEU

ASP

ALA

VAL

10

GLU

GLY

ASN

GLU

TYR

GLU

ARG

VAL

THR

VAL

11

GLY

ILE

VAL

ARG

GLU

ASP

ASN

SER

GLU

LYS

12

MET

ALA

VAL

LYS

THR

TYR

MET

TRP

ILE

ASN

13

LYS

ALA

ASP

PRO

ASP

MET

PHE

GLY

GLU

TRP

14

ASN

PHE

GLU

TRP

LYS

ARG

LEU

HIS

LYS

15

LYS

PHE

ILE

GLU

THR

PHE

LYS

ILE

16

MET

GLU

CYS

LYS

PRO

GLN

GLY

GLN

17

GLY

ASN

ASP

ILE

SER

HIS

VAL

LEU

ARG

18

GLU

ASP

GLN

Samples:

sample_1: AT5G39720, [U-15N; U-13C], 0.9 mM; deuterated Bis-Tris 10 mM; NaCl 100 mM; Dithiothreitol 5 mM; H2O 95%; D2O 5%

sample_cond_1: ionic strength: 101 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
3D 13C-separated NOESY (AROMATIC)	not available	not available	not available

Software:

X-PLOR NIH v2.9.3 - refinement

xwinnmr v3.5 -

NMRPipe v2004 -

SPSCAN v1.1.0 -

XEASY v1.3 -

GARANT v2.1 -

NMR spectrometers:

Bruker DRX 600 MHz

PDB	2G0Q
DBJ	BAB11378
GB	AAX49363 ABN04775 AED94467
REF	NP_198788
SP	Q9FIX2
AlphaFold	Q9FIX2