BMRB Entry 7004

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR7004

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, and 15N Chemical Shift Assignments for Rhodopseudomonas palustrus protein Rpa0253. Northeast structural genomics target RpR3.

Deposition date:

2006-02-23

Original release date:

2006-03-29

Authors:

Ramelot, Theresa; Kennedy, Michael

Citation:

Citation: Ramelot, Theresa; Kennedy, Michael. "NMR structure of Rpa0253 from Rhodopseudomonas paulstris" The BMRB entry is the only known published source for the data..

Assembly members:

Assembly members:
Rpa0253, polymer, 145 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Rhodopseudomonas palustris Taxonomy ID: 1076 Superkingdom: Eubacteria Kingdom: not available Genus/species: Rhodopseudomonas palustris

Experimental source:

Experimental source: Production method: recombinant technology Vector: pET21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Rpa0253: VAYWLVKSEPSVWSWDQQVA KGAAGEAWTGVRNHSAKLHM VAMRRGDRAFYYHSNEGKEI VGIAEIIREAYPDPTDASGK FVCVDIKADKPLKTPVTLAA VKAEPRLADMALMKYSRLSV QPVTAEEWKLVCKMGGLLEH HHHHH

Data sets:

assigned_chemical_shifts
- chem_shift_list_1
coupling_constants
- J_coupling_list_1

Data type	Count
13C chemical shifts	625
15N chemical shifts	150
1H chemical shifts	1014
coupling constants	77

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Rpa0253 monomer	1

Entities:

Entity 1, Rpa0253 monomer 145 residues - Formula weight is not available

1

VAL

ALA

TYR

TRP

LEU

VAL

LYS

SER

GLU

PRO

2

SER

VAL

TRP

SER

TRP

ASP

GLN

VAL

ALA

3

LYS

GLY

ALA

GLY

GLU

ALA

TRP

THR

GLY

4

VAL

ARG

ASN

HIS

SER

ALA

LYS

LEU

HIS

MET

5

VAL

ALA

MET

ARG

GLY

ASP

ARG

ALA

PHE

6

TYR

HIS

SER

ASN

GLU

GLY

LYS

GLU

ILE

7

VAL

GLY

ILE

ALA

GLU

ILE

ARG

GLU

ALA

8

TYR

PRO

ASP

PRO

THR

ASP

ALA

SER

GLY

LYS

9

PHE

VAL

CYS

VAL

ASP

ILE

LYS

ALA

ASP

LYS

10

PRO

LEU

LYS

THR

PRO

VAL

THR

LEU

ALA

11

VAL

LYS

ALA

GLU

PRO

ARG

LEU

ALA

ASP

MET

12

ALA

LEU

MET

LYS

TYR

SER

ARG

LEU

SER

VAL

13

GLN

PRO

VAL

THR

ALA

GLU

TRP

LYS

LEU

14

VAL

CYS

LYS

MET

GLY

LEU

GLU

HIS

15

HIS

Samples:

sample_1: Rpa0253, [U-100% 13C; U-100% 15N], 0.5 mM; MES 20 mM; NaCl 5 mM; CaCl2 5 mM; DTT 10 mM; NaN3 0.02%; D2O 5%

conditions_1: ionic strength: 100 mM; pH: 6.5; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	not available	not available	not available

Software:

No software information available

NMR spectrometers:

Varian Inova 799.7 MHz
Varian Inova 600.2 MHz

PDB	2GBS
EMBL	CAE25697
GB	ACE98814 ADU42022
REF	NP_945606 WP_011155821 WP_012494016 WP_013500221 YP_001989290