BMRB Entry 7002
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR7002
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Swanson, Kurt; Hicke, Linda; Radhakrishnan, Ishwar. "Structural Basis for Monoubiquitin Recognition by the Ede1 UBA Domain" J. Mol. Biol. 358, 713-724 (2006).
PubMed: 16563434
Assembly members:
Ubiquitin, polymer, 76 residues, Formula weight is not available
Ede1 UBA, polymer, 43 residues, Formula weight is not available
Natural source: Common Name: Yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
Ubiquitin: MQIFVKTLTGKTITLEVESS
DTIDNVKSKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGG
Ede1 UBA: TTPKSLAVEELSGMGFTEEE
AHNALEKCNWDLEAATNFLL
DSA
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 500 |
| 15N chemical shifts | 124 |
| 1H chemical shifts | 805 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Ubiquitin | 1 |
| 2 | Ede1 UBA | 2 |
Entities:
Entity 1, Ubiquitin 76 residues - Formula weight is not available
| 1 | MET | GLN | ILE | PHE | VAL | LYS | THR | LEU | THR | GLY | ||||
| 2 | LYS | THR | ILE | THR | LEU | GLU | VAL | GLU | SER | SER | ||||
| 3 | ASP | THR | ILE | ASP | ASN | VAL | LYS | SER | LYS | ILE | ||||
| 4 | GLN | ASP | LYS | GLU | GLY | ILE | PRO | PRO | ASP | GLN | ||||
| 5 | GLN | ARG | LEU | ILE | PHE | ALA | GLY | LYS | GLN | LEU | ||||
| 6 | GLU | ASP | GLY | ARG | THR | LEU | SER | ASP | TYR | ASN | ||||
| 7 | ILE | GLN | LYS | GLU | SER | THR | LEU | HIS | LEU | VAL | ||||
| 8 | LEU | ARG | LEU | ARG | GLY | GLY |
Entity 2, Ede1 UBA 43 residues - Formula weight is not available
| 1 | THR | THR | PRO | LYS | SER | LEU | ALA | VAL | GLU | GLU | ||||
| 2 | LEU | SER | GLY | MET | GLY | PHE | THR | GLU | GLU | GLU | ||||
| 3 | ALA | HIS | ASN | ALA | LEU | GLU | LYS | CYS | ASN | TRP | ||||
| 4 | ASP | LEU | GLU | ALA | ALA | THR | ASN | PHE | LEU | LEU | ||||
| 5 | ASP | SER | ALA |
Samples:
sample_1: Ubiquitin 1 mM; Ede1 UBA 1 mM; Sodium Phosphate 20 mM
conditions_1: pH: 6.0; temperature: . .
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|
Software:
No software information available
NMR spectrometers:
Related Database Links:
| PDB | |
| DBJ | GAA21503 |
| EMBL | CAA80797 CAA84867 CAY77738 |
| GB | AHY74439 EDN64569 EDV12138 EDZ73911 EEU07701 |
| REF | NP_009506 XP_011102417 |
| SP | P34216 |
| TPG | DAA07071 |
| AlphaFold | P34216 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks