BMRB Entry 6990

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6990

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 15N and 13C resonance assignments of the cerato-platanin, a phytotoxic protein from Ceratocystis fimbriata

Deposition date:

2006-02-15

Original release date:

2006-08-07

Authors:

Oliveira, Aline; Pazzagli, Luigia; Cappugi, Gianni; Benedetti, Celso; Spisni, Alberto; Pertinhez, Thelma

Citation:

Citation: Pazzagli, Luigia; Cappugi, Gianni; Manao, Giampaolo; Camici, Guido; Santini, Alberto; Scala, Aniello. "Purification, Characterization and Amino Acid Sequence of Cerato-platanin, a New Phytotoxic Protein from Ceratocystis fimbriata f. sp. platani." J. Biol. Chem. 274, 24959-24964 (1999).
PubMed: 10455173

Assembly members:

Assembly members:
Cerato-platanin, polymer, 129 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Ceratocystis fimbriata Taxonomy ID: 88771 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Ceratocystis fimbriata

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Cerato-platanin: EEGVSLEKRVSISYDPIYAA DLSMGSVACSNGDHGLMAQY PTLGEVPGFPNVGGIPDIAG WDSPSCGTCWKVTIPNGNSI FIRGVDSGRGGFNVNPTAFT KLVGSTEAGRVDNVNYVQVD LSNCINGAN

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	534
15N chemical shifts	136
1H chemical shifts	838

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Cerato-platanin	1

Entities:

Entity 1, Cerato-platanin 129 residues - Formula weight is not available

1

GLU

GLY

VAL

SER

LEU

GLU

LYS

ARG

VAL

2

SER

ILE

SER

TYR

ASP

PRO

ILE

TYR

ALA

3

ASP

LEU

SER

MET

GLY

SER

VAL

ALA

CYS

SER

4

ASN

GLY

ASP

HIS

GLY

LEU

MET

ALA

GLN

TYR

5

PRO

THR

LEU

GLY

GLU

VAL

PRO

GLY

PHE

PRO

6

ASN

VAL

GLY

ILE

PRO

ASP

ILE

ALA

GLY

7

TRP

ASP

SER

PRO

SER

CYS

GLY

THR

CYS

TRP

8

LYS

VAL

THR

ILE

PRO

ASN

GLY

ASN

SER

ILE

9

PHE

ILE

ARG

GLY

VAL

ASP

SER

GLY

ARG

GLY

10

GLY

PHE

ASN

VAL

ASN

PRO

THR

ALA

PHE

THR

11

LYS

LEU

VAL

GLY

SER

THR

GLU

ALA

GLY

ARG

12

VAL

ASP

ASN

VAL

ASN

TYR

VAL

GLN

VAL

ASP

13

LEU

SER

ASN

CYS

ILE

ASN

GLY

ALA

ASN

Samples:

sample_1: Cerato-platanin, [U-13C; U-15N], 0.7 ± 0.05 mM; phosphate buffer 10 mM; NaN3 0.05%

conditions_1: pH: 5.8; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
15N-HSQC	sample_1	not available	conditions_1
HNCA	sample_1	not available	conditions_1
HN(CO)CA	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
CBCACONH	sample_1	not available	conditions_1
HNCACB	sample_1	not available	conditions_1
HNHA	sample_1	not available	conditions_1
13C-HSQC	sample_1	not available	conditions_1
HCCH-TOCSY	sample_1	not available	conditions_1
HCCH-COSY	sample_1	not available	conditions_1

Software:

Protein Pack, Varian -

NMR spectrometers:

Varian Inova 500 MHz
Varian Inova 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks