BMRB Entry 6972

Name: NMR assignment of the a&#039; domain of thermophilic fungal protein disulfide isomerase
Published: 2006-08-07

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PDB ID: 2djj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6972
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignment of the a' domain of thermophilic fungal protein disulfide isomerase

Deposition date:

2006-02-03

Original release date:

2006-08-07

Authors:

Nakano, Michiko; Murakami, Chiho; Yamaguchi, Yoshiki; Sasakawa, Hiroaki; Harada, Takushi; Kurimoto, Eiji; Asami, Osamu; Kajino, Tsutomu; Kato, Koichi

Citation:

Citation: Nakano, Michiko; Murakami, Chiho; Yamaguchi, Yoshiki; Sasakawa, Hiroaki; Harada, Takushi; Kurimoto, Eiji; Asami, Osamu; Kajino, Tsutomu; Kato, Koichi. "NMR Assignments of the b' and a' Domains of Thermophilic Fungal Protein Disulfide Isomerase" J. Biomol. NMR 36, 44-44 (2006).
PubMed: 16819589

Assembly members:

Assembly members:
PDI-a', polymer, 121 residues, Formula weight is not available

Natural source:

Natural source: Common Name: thermophilic fungus Taxonomy ID: 34413 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Humicola insolens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDI-a': GPLGSEGPVTVVVAKNYNEI VLDDTKDVLIEFYAPWCGHC KALAPKYEELGALYAKSEFK DRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYS GSRTVEDLIKFIAENGKYKA A

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	422
15N chemical shifts	115
1H chemical shifts	769

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDI-a'	1

Entities:

Entity 1, PDI-a' 121 residues - Formula weight is not available

1

GLY

PRO

LEU

GLY

SER

GLU

GLY

PRO

VAL

THR

2

VAL

ALA

LYS

ASN

TYR

ASN

GLU

ILE

3

VAL

LEU

ASP

THR

LYS

ASP

VAL

LEU

ILE

4

GLU

PHE

TYR

ALA

PRO

TRP

CYS

GLY

HIS

CYS

5

LYS

ALA

LEU

ALA

PRO

LYS

TYR

GLU

LEU

6

GLY

ALA

LEU

TYR

ALA

LYS

SER

GLU

PHE

LYS

7

ASP

ARG

VAL

ILE

ALA

LYS

VAL

ASP

ALA

8

THR

ALA

ASN

ASP

VAL

PRO

ASP

GLU

ILE

GLN

9

GLY

PHE

PRO

THR

ILE

LYS

LEU

TYR

PRO

ALA

10

GLY

ALA

LYS

GLY

GLN

PRO

VAL

THR

TYR

SER

11

GLY

SER

ARG

THR

VAL

GLU

ASP

LEU

ILE

LYS

12

PHE

ILE

ALA

GLU

ASN

GLY

LYS

TYR

LYS

ALA

13

ALA

Samples:

sample_1: PDI-a', [U-13C; U-15N], 1 mM

conditions_1: pH: 6.0; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
1H13C HSQC	sample_1	not available	conditions_1
HNCA	sample_1	not available	conditions_1
HN(CO)CA	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
HN(CA)CO	sample_1	not available	conditions_1
CBCA(CO)NH	sample_1	not available	conditions_1
CBCANH	sample_1	not available	conditions_1
HBHA(CO)NH	sample_1	not available	conditions_1
15N-edited TOCSY	sample_1	not available	conditions_1
H(CC)(CO)NH	sample_1	not available	conditions_1
C(CO)NH	sample_1	not available	conditions_1
HCCH-COSY	sample_1	not available	conditions_1
HCCH-TOCSY	sample_1	not available	conditions_1
1H-1H TOCSY	sample_1	not available	conditions_1
1H-1H NOESY	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Bruker DRX 800 MHz
Bruker Avance 600 MHz
Bruker DMX 500 MHz