BMRB Entry 6883

Name: Ufd1
Published: 2007-11-29

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR6883

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Ufd1

Deposition date:

2005-11-02

Original release date:

2007-11-29

Authors:

Park, sunghyouk; Isaacson, Rivka; Silver, Pamela; Wagner, Gerhard

Citation:

Citation: Park, Sunghyouk; Isaacson, Rivka; Kim, P.; Silver, Pamela; Wagner, Gerhard. "Ufd1 exhibits the AAA-ATPase fold with two distinct ubiquitin interaction sites" Structure 13, 995-1005 (2005).
PubMed: 16004872

Assembly members:

Assembly members:
Ufd1, polymer, 208 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ufd1: MFSGFSSFGGGNGFVNMPQT FEEFFRCYPIAMMNDRIRKD DANFGGKIFLPPSALSKLSM LNIRYPMLFKLTANETGRVT HGGVLEFIAEEGRVYLPQWM METLGIQPGSLLQISSTDVP LGQFVKLEPQSVDFLDISDP KAVLENVLRNFSTLTVDDVI EISYNGKTFKIKILEVKPES SSKSICVIETDLVTDFAPPV GYVEPDYK

Data sets:

assigned_chemical_shifts
- chem_shift_list_1

Data type	Count
13C chemical shifts	755
15N chemical shifts	187
1H chemical shifts	1227

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ufd1	1

Entities:

Entity 1, Ufd1 208 residues - Formula weight is not available

1

MET

PHE

SER

GLY

PHE

SER

PHE

GLY

2

GLY

ASN

GLY

PHE

VAL

ASN

MET

PRO

GLN

THR

3

PHE

GLU

PHE

ARG

CYS

TYR

PRO

ILE

4

ALA

MET

ASN

ASP

ARG

ILE

ARG

LYS

ASP

5

ASP

ALA

ASN

PHE

GLY

LYS

ILE

PHE

LEU

6

PRO

SER

ALA

LEU

SER

LYS

LEU

SER

MET

7

LEU

ASN

ILE

ARG

TYR

PRO

MET

LEU

PHE

LYS

8

LEU

THR

ALA

ASN

GLU

THR

GLY

ARG

VAL

THR

9

HIS

GLY

VAL

LEU

GLU

PHE

ILE

ALA

GLU

10

GLU

GLY

ARG

VAL

TYR

LEU

PRO

GLN

TRP

MET

11

MET

GLU

THR

LEU

GLY

ILE

GLN

PRO

GLY

SER

12

LEU

GLN

ILE

SER

THR

ASP

VAL

PRO

13

LEU

GLY

GLN

PHE

VAL

LYS

LEU

GLU

PRO

GLN

14

SER

VAL

ASP

PHE

LEU

ASP

ILE

SER

ASP

PRO

15

LYS

ALA

VAL

LEU

GLU

ASN

VAL

LEU

ARG

ASN

16

PHE

SER

THR

LEU

THR

VAL

ASP

VAL

ILE

17

GLU

ILE

SER

TYR

ASN

GLY

LYS

THR

PHE

LYS

18

ILE

LYS

ILE

LEU

GLU

VAL

LYS

PRO

GLU

SER

19

SER

LYS

SER

ILE

CYS

VAL

ILE

GLU

THR

20

ASP

LEU

VAL

THR

ASP

PHE

ALA

PRO

VAL

21

GLY

TYR

VAL

GLU

PRO

ASP

TYR

LYS

Samples:

sample_1: Ufd1, [U-13C; U-15N], 0.2 mM

conditions_1: temperature: 307 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H15N HSQC	sample_1	not available	conditions_1
HNCA	sample_1	not available	conditions_1
HNCACO	sample_1	not available	conditions_1
HNCO	sample_1	not available	conditions_1
HNCOCA	sample_1	not available	conditions_1

Software:

No software information available

NMR spectrometers:

Varian Inova 500 MHz
Varian Inova 600 MHz
Bruker ARX 500 MHz
Bruker ARX 600 MHz
Varian Unity` 750 MHz

PDB	1ZC1
DBJ	GAA23430
EMBL	CAA97047 CAY79809
GB	AAB46627 AAC49023 AAT92825 AAZ22463 AHY79412
REF	NP_011562
SP	P53044
TPG	DAA08146
AlphaFold	P53044